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Carg08076 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg08076
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionclassical arabinogalactan protein 1-like
Genome locationCarg_Chr04:2130008..2131245
RNA-Seq ExpressionCarg08076
SyntenyCarg08076
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR044959 - Classical arabinogalactan protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7030900.1 hypothetical protein SDJN02_04937, partial [Cucurbita argyrosperma subsp. argyrosperma]4.9e-80100Show/hide
Query:  MAIRGFVVMVMVAMLIVSAIAQSPSASPSLSPTKSPSKAPSISPSVESPKSSPAAAPTPASLKSPPSPPAASPSLSPSPSPSSISSPPADAPAPSGNAAA
        MAIRGFVVMVMVAMLIVSAIAQSPSASPSLSPTKSPSKAPSISPSVESPKSSPAAAPTPASLKSPPSPPAASPSLSPSPSPSSISSPPADAPAPSGNAAA
Subjt:  MAIRGFVVMVMVAMLIVSAIAQSPSASPSLSPTKSPSKAPSISPSVESPKSSPAAAPTPASLKSPPSPPAASPSLSPSPSPSSISSPPADAPAPSGNAAA

Query:  SISFSMFGSVATVLYAIFGMDSILSSFILSSDIICFIGALNDIHVPNRRNQSLEWACGLGLDASSLGKCCQSSSISIAAPF
        SISFSMFGSVATVLYAIFGMDSILSSFILSSDIICFIGALNDIHVPNRRNQSLEWACGLGLDASSLGKCCQSSSISIAAPF
Subjt:  SISFSMFGSVATVLYAIFGMDSILSSFILSSDIICFIGALNDIHVPNRRNQSLEWACGLGLDASSLGKCCQSSSISIAAPF

XP_022942993.1 classical arabinogalactan protein 1-like [Cucurbita moschata]1.5e-4199.15Show/hide
Query:  MAIRGFVVMVMVAMLIVSAIAQSPSASPSLSPTKSPSKAPSISPSVESPKSSPAAAPTPASLKSPPSPPAASPSLSPSPSPSSISSPPADAPAPSGNAAA
        MAIRGFVVMV VAMLIVSAIAQSPSASPSLSPTKSPSKAPSISPSVESPKSSPAAAPTPASLKSPPSPPAASPSLSPSPSPSSISSPPADAPAPSGNAAA
Subjt:  MAIRGFVVMVMVAMLIVSAIAQSPSASPSLSPTKSPSKAPSISPSVESPKSSPAAAPTPASLKSPPSPPAASPSLSPSPSPSSISSPPADAPAPSGNAAA

Query:  SISFSMFGSVATVLYAI
        SISFSMFGSVATVLYAI
Subjt:  SISFSMFGSVATVLYAI

XP_022992086.1 classical arabinogalactan protein 1-like [Cucurbita maxima]1.0e-3791.67Show/hide
Query:  MAIRGFVVMVMVAMLIVSAIAQSPSASPSLSPTKSPSKAPSISPSVESPKSSPAAAPTPASLKSPPSPPAASPSLSPSPSPSSISSPPADAPAPSGNAAA
        MA RGFVVMV VAMLIVSAIAQSPSASPSLSPTKSPSKAPSISPSV+SPKSSPAAAPTP SLKSPPSPPAASPSLSPSPSPSSISSPPADAPAPSGN+AA
Subjt:  MAIRGFVVMVMVAMLIVSAIAQSPSASPSLSPTKSPSKAPSISPSVESPKSSPAAAPTPASLKSPPSPPAASPSLSPSPSPSSISSPPADAPAPSGNAAA

Query:  SISFSMFGSVATVLYAIFGM
        SIS SMFGSVA VL+AI  M
Subjt:  SISFSMFGSVATVLYAIFGM

XP_023542663.1 classical arabinogalactan protein 1-like [Cucurbita pepo subsp. pepo]5.5e-3995.8Show/hide
Query:  MAIRGFVVMVMVAMLIVSAIAQSPSASPSLSPTKSPSKAPSISPSVESPKSSPAAAPTPASLKSPPSPPAASPSL--SPSPSPSSISSPPADAPAPSGNA
        MAIRGFVVMVMVAMLIVSAIAQSPSASPSLSPTKSPSKAPSISPSVESPKSSPAAAPTPASL+SPPSPPAASPSL  SPSPSPSSISSPPADAPAPSGNA
Subjt:  MAIRGFVVMVMVAMLIVSAIAQSPSASPSLSPTKSPSKAPSISPSVESPKSSPAAAPTPASLKSPPSPPAASPSL--SPSPSPSSISSPPADAPAPSGNA

Query:  AASISFSMFGSVATVLYAI
        AASIS SMFGSVA VLYAI
Subjt:  AASISFSMFGSVATVLYAI

XP_038877310.1 classical arabinogalactan protein 1 [Benincasa hispida]3.3e-2876.42Show/hide
Query:  MAIRGFVVMVMVAMLIVSAIAQSPSASPSLSPTKSPSKAPSISPSVESPKSSPAAAPTPASLKSPPSPPAASPSLSPSP------SPSSISSPPADAPAP
        MAIR FV M++VA+LI SAIAQSP ASP  SP+KSPSKAPS SPSV+SPKSSPAAAPTP+SLKSPPSPP+ SP+ SPSP      SPS ISSPPADAPAP
Subjt:  MAIRGFVVMVMVAMLIVSAIAQSPSASPSLSPTKSPSKAPSISPSVESPKSSPAAAPTPASLKSPPSPPAASPSLSPSP------SPSSISSPPADAPAP

Query:  SGNAAASISFSMFGSVATVLYAI
        SGN AASISFS+FGSVA VLY +
Subjt:  SGNAAASISFSMFGSVATVLYAI

TrEMBL top hitse value%identityAlignment
A0A0A0KZB8 Uncharacterized protein4.8e-2572.27Show/hide
Query:  MAIRGFVVMVMVAMLIVSAIAQSPSASPSLSPTKSPSKAPSISPSVESPKSSPAAAPTPASLKSPPSPPAASPSLSPSP--SPSSISSPPADAPAPSGNA
        MAI   V ++ V+  I SA AQSP+ASPSLSPTKSPSKAPS +    SPKSSPA APTP+SLKSPPSPP++SPS SPSP  SP+SISSPPADAPAPSGN 
Subjt:  MAIRGFVVMVMVAMLIVSAIAQSPSASPSLSPTKSPSKAPSISPSVESPKSSPAAAPTPASLKSPPSPPAASPSLSPSP--SPSSISSPPADAPAPSGNA

Query:  AASISFSMFGSVATVLYAI
        AASI+FS+FGSVA  LYA+
Subjt:  AASISFSMFGSVATVLYAI

A0A6J1E9Q3 classical arabinogalactan protein 1-like3.7e-2576.47Show/hide
Query:  MAIRGFVVMVMVAMLIVSAIAQSPSASPSLSPTKSPSKAPSISPSVESPKSSPAAAPTPASLKSPPSPPAASPSLSPSP--SPSSISSPPADAPAPSGNA
        MAIR FVVM++VA+LI SAIAQSP+ASPSLSP KSPSKAPS SPSV+SPKSSP AAPTPAS          SPS SPSP  SPSSISSPPADAPAPSG+ 
Subjt:  MAIRGFVVMVMVAMLIVSAIAQSPSASPSLSPTKSPSKAPSISPSVESPKSSPAAAPTPASLKSPPSPPAASPSLSPSP--SPSSISSPPADAPAPSGNA

Query:  AASISFSMFGSVATVLYAI
        AASISFS+FGSVA VLYA+
Subjt:  AASISFSMFGSVATVLYAI

A0A6J1FW49 classical arabinogalactan protein 1-like7.4e-4299.15Show/hide
Query:  MAIRGFVVMVMVAMLIVSAIAQSPSASPSLSPTKSPSKAPSISPSVESPKSSPAAAPTPASLKSPPSPPAASPSLSPSPSPSSISSPPADAPAPSGNAAA
        MAIRGFVVMV VAMLIVSAIAQSPSASPSLSPTKSPSKAPSISPSVESPKSSPAAAPTPASLKSPPSPPAASPSLSPSPSPSSISSPPADAPAPSGNAAA
Subjt:  MAIRGFVVMVMVAMLIVSAIAQSPSASPSLSPTKSPSKAPSISPSVESPKSSPAAAPTPASLKSPPSPPAASPSLSPSPSPSSISSPPADAPAPSGNAAA

Query:  SISFSMFGSVATVLYAI
        SISFSMFGSVATVLYAI
Subjt:  SISFSMFGSVATVLYAI

A0A6J1J6X2 classical arabinogalactan protein 1-like4.8e-2576.47Show/hide
Query:  MAIRGFVVMVMVAMLIVSAIAQSPSASPSLSPTKSPSKAPSISPSVESPKSSPAAAPTPASLKSPPSPPAASPSLSPSP--SPSSISSPPADAPAPSGNA
        MAIR FVVM++VA+LI SAIAQSP+ASPSLSP KSPSKAP  SPSV+SPKSSP AAPTPAS          SPS SPSP  SPSSISSPPADAPAPSGN 
Subjt:  MAIRGFVVMVMVAMLIVSAIAQSPSASPSLSPTKSPSKAPSISPSVESPKSSPAAAPTPASLKSPPSPPAASPSLSPSP--SPSSISSPPADAPAPSGNA

Query:  AASISFSMFGSVATVLYAI
        AASISFS+FGSVA VLYA+
Subjt:  AASISFSMFGSVATVLYAI

A0A6J1JSK4 classical arabinogalactan protein 1-like5.0e-3891.67Show/hide
Query:  MAIRGFVVMVMVAMLIVSAIAQSPSASPSLSPTKSPSKAPSISPSVESPKSSPAAAPTPASLKSPPSPPAASPSLSPSPSPSSISSPPADAPAPSGNAAA
        MA RGFVVMV VAMLIVSAIAQSPSASPSLSPTKSPSKAPSISPSV+SPKSSPAAAPTP SLKSPPSPPAASPSLSPSPSPSSISSPPADAPAPSGN+AA
Subjt:  MAIRGFVVMVMVAMLIVSAIAQSPSASPSLSPTKSPSKAPSISPSVESPKSSPAAAPTPASLKSPPSPPAASPSLSPSPSPSSISSPPADAPAPSGNAAA

Query:  SISFSMFGSVATVLYAIFGM
        SIS SMFGSVA VL+AI  M
Subjt:  SISFSMFGSVATVLYAIFGM

SwissProt top hitse value%identityAlignment
Q8LCN5 Classical arabinogalactan protein 12.0e-0749.59Show/hide
Query:  RGFVVMVMVAMLIVSAIAQSPSASPS------LSPTKSPSK--APSISPSVESPKSSPAAAPTPASLKSPPSPPAA-SPSL-SPSPSPSSISSPPADAPA
        +  V +++ A+LI SA+AQSP+ +PS      +SP  SP K  AP+ +P V SP  SPAAA TP S  SPPSPP A SP+  SP+ SPS+IS  P +AP 
Subjt:  RGFVVMVMVAMLIVSAIAQSPSASPS------LSPTKSPSK--APSISPSVESPKSSPAAAPTPASLKSPPSPPAA-SPSL-SPSPSPSSISSPPADAPA

Query:  PSGNAAASISFSMFGSVATVLYA
        P+   A S  F+ FGSVA +L A
Subjt:  PSGNAAASISFSMFGSVATVLYA

Arabidopsis top hitse value%identityAlignment
AT5G64310.1 arabinogalactan protein 11.4e-0849.59Show/hide
Query:  RGFVVMVMVAMLIVSAIAQSPSASPS------LSPTKSPSK--APSISPSVESPKSSPAAAPTPASLKSPPSPPAA-SPSL-SPSPSPSSISSPPADAPA
        +  V +++ A+LI SA+AQSP+ +PS      +SP  SP K  AP+ +P V SP  SPAAA TP S  SPPSPP A SP+  SP+ SPS+IS  P +AP 
Subjt:  RGFVVMVMVAMLIVSAIAQSPSASPS------LSPTKSPSK--APSISPSVESPKSSPAAAPTPASLKSPPSPPAA-SPSL-SPSPSPSSISSPPADAPA

Query:  PSGNAAASISFSMFGSVATVLYA
        P+   A S  F+ FGSVA +L A
Subjt:  PSGNAAASISFSMFGSVATVLYA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGATTAGAGGTTTTGTGGTGATGGTTATGGTGGCGATGTTGATCGTTTCCGCAATCGCGCAATCGCCGTCGGCATCTCCGTCATTGTCTCCGACTAAATCGCCGTC
TAAGGCTCCGTCGATTTCTCCGTCTGTAGAGTCGCCGAAATCCTCTCCTGCTGCAGCGCCTACTCCGGCATCTTTGAAGTCTCCGCCATCTCCTCCTGCTGCTTCTCCGT
CTCTGTCTCCTTCTCCTTCTCCATCGTCGATATCCTCTCCTCCAGCAGACGCTCCTGCTCCGTCTGGTAACGCCGCCGCTTCGATCTCTTTCTCGATGTTCGGATCTGTG
GCCACTGTGCTGTACGCCATCTTTGGGATGGACTCTATACTATCTTCTTTTATTCTTTCGTCTGATATAATTTGTTTCATTGGGGCATTGAATGACATACATGTTCCAAA
TAGAAGGAACCAAAGCTTAGAATGGGCATGTGGGTTGGGTTTGGATGCTTCTTCTCTTGGGAAATGTTGTCAAAGCTCATCAATTTCCATTGCCGCTCCATTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCGATTAGAGGTTTTGTGGTGATGGTTATGGTGGCGATGTTGATCGTTTCCGCAATCGCGCAATCGCCGTCGGCATCTCCGTCATTGTCTCCGACTAAATCGCCGTC
TAAGGCTCCGTCGATTTCTCCGTCTGTAGAGTCGCCGAAATCCTCTCCTGCTGCAGCGCCTACTCCGGCATCTTTGAAGTCTCCGCCATCTCCTCCTGCTGCTTCTCCGT
CTCTGTCTCCTTCTCCTTCTCCATCGTCGATATCCTCTCCTCCAGCAGACGCTCCTGCTCCGTCTGGTAACGCCGCCGCTTCGATCTCTTTCTCGATGTTCGGATCTGTG
GCCACTGTGCTGTACGCCATCTTTGGGATGGACTCTATACTATCTTCTTTTATTCTTTCGTCTGATATAATTTGTTTCATTGGGGCATTGAATGACATACATGTTCCAAA
TAGAAGGAACCAAAGCTTAGAATGGGCATGTGGGTTGGGTTTGGATGCTTCTTCTCTTGGGAAATGTTGTCAAAGCTCATCAATTTCCATTGCCGCTCCATTTTAG
Protein sequenceShow/hide protein sequence
MAIRGFVVMVMVAMLIVSAIAQSPSASPSLSPTKSPSKAPSISPSVESPKSSPAAAPTPASLKSPPSPPAASPSLSPSPSPSSISSPPADAPAPSGNAAASISFSMFGSV
ATVLYAIFGMDSILSSFILSSDIICFIGALNDIHVPNRRNQSLEWACGLGLDASSLGKCCQSSSISIAAPF