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Carg08125 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg08125
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description40s ribosomal protein s29
Genome locationCarg_Chr04:2423534..2426927
RNA-Seq ExpressionCarg08125
SyntenyCarg08125
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0022627 - cytosolic small ribosomal subunit (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001209 - Ribosomal protein S14
IPR023676 - Ribosomal protein S14, type Z, archaeal
IPR039744 - 40S ribosomal protein S29/30S ribosomal protein S14 type Z
IPR043140 - Ribosomal protein S14/S29


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF5181172.1 40s ribosomal protein s29 [Thalictrum thalictroides]1.4e-2789.06Show/hide
Query:  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKAKLPSHCLLL
        MGHSNVWNSHPK+YGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK +   HC LL
Subjt:  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKAKLPSHCLLL

KAG6784461.1 hypothetical protein POTOM_010157 [Populus tomentosa]2.6e-2687.1Show/hide
Query:  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKAKLPSHCL
        MGHSNVWNSHPK+YGPGSRTCRVCGNPHG+IRKYGLMCCRQCFRSNAKEIGFIK ++  H L
Subjt:  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKAKLPSHCL

KAG7014949.1 40S ribosomal protein S29, partial [Cucurbita argyrosperma subsp. argyrosperma]1.0e-3059.4Show/hide
Query:  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKAK--------------------------------------------
        MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKA                                             
Subjt:  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKAK--------------------------------------------

Query:  --LPSHCLLLPP-PVASLKEASSPLRAFSSSAM
          LP+  L LPP P+A+LKEASSPLRAFSSSAM
Subjt:  --LPSHCLLLPP-PVASLKEASSPLRAFSSSAM

KAG7030949.1 40S ribosomal protein S29, partial [Cucurbita argyrosperma subsp. argyrosperma]4.0e-80100Show/hide
Query:  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKAKLPSHCLLLPPPVASLKEASSPLRAFSSSAMYNYYQKHVSSDNGS
        MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKAKLPSHCLLLPPPVASLKEASSPLRAFSSSAMYNYYQKHVSSDNGS
Subjt:  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKAKLPSHCLLLPPPVASLKEASSPLRAFSSSAMYNYYQKHVSSDNGS

Query:  PSYELISGAVSKRCTCTISLQIRSNEPSLVLVSSSMTGAFSQIFTAFSRQ
        PSYELISGAVSKRCTCTISLQIRSNEPSLVLVSSSMTGAFSQIFTAFSRQ
Subjt:  PSYELISGAVSKRCTCTISLQIRSNEPSLVLVSSSMTGAFSQIFTAFSRQ

QCE08455.1 small subunit ribosomal protein S29e [Vigna unguiculata]6.8e-2781.69Show/hide
Query:  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKAKLPSHCL----LLPPP
        MGHSNVWNSHPK+YGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK  +P++ +    LL PP
Subjt:  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKAKLPSHCL----LLPPP

TrEMBL top hitse value%identityAlignment
A0A1L6K5A9 Uncharacterized protein1.6e-2684.38Show/hide
Query:  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKAKLPSHCLLL
        MGHSN+WNSHPKSYGPGSRTCRVCGNPHG+IRKYGLMCCRQCFRSNAKEIGFIK +   + L+L
Subjt:  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKAKLPSHCLLL

A0A2G5DLJ3 Uncharacterized protein2.8e-2690Show/hide
Query:  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKAKLPSH
        MGHSNVWNSHPK+YGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK +   H
Subjt:  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKAKLPSH

A0A498JVM4 Uncharacterized protein2.1e-2693.22Show/hide
Query:  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKAKLPS
        MGHSNVWNSHPK+YGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK K+ S
Subjt:  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKAKLPS

A0A4D6N8J1 Small subunit ribosomal protein S29e3.3e-2781.69Show/hide
Query:  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKAKLPSHCL----LLPPP
        MGHSNVWNSHPK+YGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK  +P++ +    LL PP
Subjt:  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKAKLPSHCL----LLPPP

A0A7J6V9W7 40s ribosomal protein s296.6e-2889.06Show/hide
Query:  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKAKLPSHCLLL
        MGHSNVWNSHPK+YGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK +   HC LL
Subjt:  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKAKLPSHCLLL

SwissProt top hitse value%identityAlignment
Q4PM47 40S ribosomal protein S297.8e-1870.37Show/hide
Query:  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK
        MGH N+W SHP+ YGPGSR CRVC N HGLIRKYGL  CR+CFR  A +IGF K
Subjt:  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK

Q5I7K3 40S ribosomal protein S291.1e-2488.89Show/hide
Query:  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK
        MGHSNVWNSHPK+YG GSR CRVCGN HGLIRKYGLMCCRQCFRS+AK+IGFIK
Subjt:  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK

Q680P8 40S ribosomal protein S291.7e-2592.59Show/hide
Query:  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK
        MGHSNVWNSHPK YGPGSR CRVCGN HGLIRKYGL CCRQCFRSNAKEIGFIK
Subjt:  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK

Q6F473 40S ribosomal protein S291.7e-1768.52Show/hide
Query:  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK
        MGH+N+W SHP+ YG GSR+CR C N HGLIRKYGL  CRQCFR  A +IGF K
Subjt:  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK

Q7XYB0 40S ribosomal protein S291.2e-1868.52Show/hide
Query:  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK
        MGH N+W SHP+ YG GSR+C++CGN HGLIRKY +  CRQCFR  AK+IGFIK
Subjt:  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK

Arabidopsis top hitse value%identityAlignment
AT3G43980.1 Ribosomal protein S14p/S29e family protein1.2e-2692.59Show/hide
Query:  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK
        MGHSNVWNSHPK YGPGSR CRVCGN HGLIRKYGL CCRQCFRSNAKEIGFIK
Subjt:  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK

AT3G44010.1 Ribosomal protein S14p/S29e family protein1.2e-2692.59Show/hide
Query:  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK
        MGHSNVWNSHPK YGPGSR CRVCGN HGLIRKYGL CCRQCFRSNAKEIGFIK
Subjt:  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK

AT4G33865.1 Ribosomal protein S14p/S29e family protein1.2e-2692.59Show/hide
Query:  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK
        MGHSNVWNSHPK YGPGSR CRVCGN HGLIRKYGL CCRQCFRSNAKEIGFIK
Subjt:  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGCACTCCAACGTGTGGAACTCTCATCCTAAGAGCTATGGGCCTGGTTCTCGCACCTGTCGTGTGTGCGGAAATCCTCATGGTTTGATCAGGAAGTATGGACTTAT
GTGTTGCAGACAATGCTTCCGTAGCAATGCCAAGGAAATTGGCTTCATTAAGGCAAAGCTGCCTTCTCACTGCCTCCTCCTCCCTCCACCAGTAGCTAGCCTCAAGGAAG
CTAGCTCCCCTTTGAGGGCCTTCAGCTCCTCAGCCATGTACAACTATTATCAGAAACATGTCTCAAGCGATAACGGTAGCCCATCATATGAACTTATTTCCGGTGCCGTA
AGCAAAAGATGCACTTGCACCATTTCGCTGCAAATTCGTTCGAATGAACCTTCACTGGTTCTCGTCTCCAGTAGTATGACAGGAGCCTTCAGCCAGATCTTCACTGCCTT
TTCTCGGCAG
mRNA sequenceShow/hide mRNA sequence
ATGGGGCACTCCAACGTGTGGAACTCTCATCCTAAGAGCTATGGGCCTGGTTCTCGCACCTGTCGTGTGTGCGGAAATCCTCATGGTTTGATCAGGAAGTATGGACTTAT
GTGTTGCAGACAATGCTTCCGTAGCAATGCCAAGGAAATTGGCTTCATTAAGGCAAAGCTGCCTTCTCACTGCCTCCTCCTCCCTCCACCAGTAGCTAGCCTCAAGGAAG
CTAGCTCCCCTTTGAGGGCCTTCAGCTCCTCAGCCATGTACAACTATTATCAGAAACATGTCTCAAGCGATAACGGTAGCCCATCATATGAACTTATTTCCGGTGCCGTA
AGCAAAAGATGCACTTGCACCATTTCGCTGCAAATTCGTTCGAATGAACCTTCACTGGTTCTCGTCTCCAGTAGTATGACAGGAGCCTTCAGCCAGATCTTCACTGCCTT
TTCTCGGCAG
Protein sequenceShow/hide protein sequence
MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKAKLPSHCLLLPPPVASLKEASSPLRAFSSSAMYNYYQKHVSSDNGSPSYELISGAV
SKRCTCTISLQIRSNEPSLVLVSSSMTGAFSQIFTAFSRQ