; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg08126 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg08126
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionhistone deacetylase 6
Genome locationCarg_Chr04:2427523..2430116
RNA-Seq ExpressionCarg08126
SyntenyCarg08126
Gene Ontology termsGO:0009958 - positive gravitropism (biological process)
GO:0016567 - protein ubiquitination (biological process)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001607 - Zinc finger, UBP-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6600290.1 Histone deacetylase 6, partial [Cucurbita argyrosperma subsp. sororia]4.1e-7888.89Show/hide
Query:  MANEAGSSSSNPAPCVIEEEVGEEFLYGAESGWVEALTSCDHLPSLCSDLAHIPPPDTACCESFHDLENAYLFEQSTYARCENPKENWLCLCCKNVFCSR
        MANEAGSSSSNPAPCVIEEEVGEEFLYGAESGWVEALTSCDHLPSLCSDLAHIPPPDTACCE                  CENPKENWLCLCCKNVFCSR
Subjt:  MANEAGSSSSNPAPCVIEEEVGEEFLYGAESGWVEALTSCDHLPSLCSDLAHIPPPDTACCESFHDLENAYLFEQSTYARCENPKENWLCLCCKNVFCSR

Query:  FVNKHMLQHYQQSNHSLALSYSDLSVWCFSCDAYLDAQLIQELRPVHEVAYILKFGEAPPFR
        FVNKHMLQHYQQSNHSLALSYSDLSVWCFSCDAYLDAQLIQELRPVHEVAYILKFGEAPPFR
Subjt:  FVNKHMLQHYQQSNHSLALSYSDLSVWCFSCDAYLDAQLIQELRPVHEVAYILKFGEAPPFR

KAG7030950.1 Histone deacetylase 6, partial [Cucurbita argyrosperma subsp. argyrosperma]1.0e-92100Show/hide
Query:  MANEAGSSSSNPAPCVIEEEVGEEFLYGAESGWVEALTSCDHLPSLCSDLAHIPPPDTACCESFHDLENAYLFEQSTYARCENPKENWLCLCCKNVFCSR
        MANEAGSSSSNPAPCVIEEEVGEEFLYGAESGWVEALTSCDHLPSLCSDLAHIPPPDTACCESFHDLENAYLFEQSTYARCENPKENWLCLCCKNVFCSR
Subjt:  MANEAGSSSSNPAPCVIEEEVGEEFLYGAESGWVEALTSCDHLPSLCSDLAHIPPPDTACCESFHDLENAYLFEQSTYARCENPKENWLCLCCKNVFCSR

Query:  FVNKHMLQHYQQSNHSLALSYSDLSVWCFSCDAYLDAQLIQELRPVHEVAYILKFGEAPPFR
        FVNKHMLQHYQQSNHSLALSYSDLSVWCFSCDAYLDAQLIQELRPVHEVAYILKFGEAPPFR
Subjt:  FVNKHMLQHYQQSNHSLALSYSDLSVWCFSCDAYLDAQLIQELRPVHEVAYILKFGEAPPFR

XP_022149228.1 histone deacetylase 6 [Momordica charantia]3.4e-6477.16Show/hide
Query:  MANEAGSSSSNPAPCVIEEEVGEEFLYGAESGWVEALTSCDHLPSLCSDLAHIPPPDTACCESFHDLENAYLFEQSTYARCENPKENWLCLCCKNVFCSR
        MANEAGSSSSN  PC+IEEE GEE L+GAE+GWVEALT CDHL SL SDLAHIP PDTAC E                  C+NPKENWLCLCCKN+ CSR
Subjt:  MANEAGSSSSNPAPCVIEEEVGEEFLYGAESGWVEALTSCDHLPSLCSDLAHIPPPDTACCESFHDLENAYLFEQSTYARCENPKENWLCLCCKNVFCSR

Query:  FVNKHMLQHYQQSNHSLALSYSDLSVWCFSCDAYLDAQLIQELRPVHEVAYILKFGEAPPFR
        FVNKHMLQHYQQS H LALSYSDLSVWCFSCDAYLDAQ+IQELRPV+EVAYILKFGEAPPFR
Subjt:  FVNKHMLQHYQQSNHSLALSYSDLSVWCFSCDAYLDAQLIQELRPVHEVAYILKFGEAPPFR

XP_022942503.1 BTB/POZ domain-containing protein NPY2-like isoform X2 [Cucurbita moschata]5.2e-6579.49Show/hide
Query:  SSSSNPAPCVIEEEVGEEFLYGAESGWVEALTSCDHLPSLCSDLAHIPPPDTACCESFHDLENAYLFEQSTYARCENPKENWLCLCCKNVFCSRFVNKHM
        S SS P      +++ +EFLYGAESGWVEALTSCDHLPSLCSDLAHIPPPDTACCE                  CENPKENWLCLCCKNVFCSRFVNKHM
Subjt:  SSSSNPAPCVIEEEVGEEFLYGAESGWVEALTSCDHLPSLCSDLAHIPPPDTACCESFHDLENAYLFEQSTYARCENPKENWLCLCCKNVFCSRFVNKHM

Query:  LQHYQQSNHSLALSYSDLSVWCFSCDAYLDAQLIQELRPVHEVAYILKFGEAPPFR
        LQHYQQSNHSLALSYSDLSVWCFSCDAYLDAQLIQELRPVHEVAYILKFGE PPFR
Subjt:  LQHYQQSNHSLALSYSDLSVWCFSCDAYLDAQLIQELRPVHEVAYILKFGEAPPFR

XP_038904979.1 histone deacetylase 6 [Benincasa hispida]3.7e-6375.31Show/hide
Query:  MANEAGSSSSNPAPCVIEEEVGEEFLYGAESGWVEALTSCDHLPSLCSDLAHIPPPDTACCESFHDLENAYLFEQSTYARCENPKENWLCLCCKNVFCSR
        MA EAGSSSSNP P ++EEEV EE LYGAESGWVEALTSCDHL  L  DLAHIPPPD  C E                  C+NPKENWLCL CK+VFCSR
Subjt:  MANEAGSSSSNPAPCVIEEEVGEEFLYGAESGWVEALTSCDHLPSLCSDLAHIPPPDTACCESFHDLENAYLFEQSTYARCENPKENWLCLCCKNVFCSR

Query:  FVNKHMLQHYQQSNHSLALSYSDLSVWCFSCDAYLDAQLIQELRPVHEVAYILKFGEAPPFR
        FVNKHMLQHY+Q  H LALSYSDLSVWCFSCDAYLDAQ+IQELRPVHEVAYILKFGEAPPFR
Subjt:  FVNKHMLQHYQQSNHSLALSYSDLSVWCFSCDAYLDAQLIQELRPVHEVAYILKFGEAPPFR

TrEMBL top hitse value%identityAlignment
A0A0A0KT14 UBP-type domain-containing protein5.8e-6273.17Show/hide
Query:  MANEAGSSS--SNPAPCVIEEEVGEEFLYGAESGWVEALTSCDHLPSLCSDLAHIPPPDTACCESFHDLENAYLFEQSTYARCENPKENWLCLCCKNVFC
        MA +AGSSS  SNP   +IE+EV EE LYGA SGWV+ALTSCDHL SL SDLAHIPPP T C                  ++C+NPKENW+CLCCK+VFC
Subjt:  MANEAGSSS--SNPAPCVIEEEVGEEFLYGAESGWVEALTSCDHLPSLCSDLAHIPPPDTACCESFHDLENAYLFEQSTYARCENPKENWLCLCCKNVFC

Query:  SRFVNKHMLQHYQQSNHSLALSYSDLSVWCFSCDAYLDAQLIQELRPVHEVAYILKFGEAPPFR
        SRFVNKHMLQHY+QS H LALSYSDLSVWCFSCDAYLDAQ+IQELRPVHEVAYILKFGEAPPFR
Subjt:  SRFVNKHMLQHYQQSNHSLALSYSDLSVWCFSCDAYLDAQLIQELRPVHEVAYILKFGEAPPFR

A0A1S3BZ94 histone deacetylase 62.9e-6173.49Show/hide
Query:  MANEAGSSS--SNPAPCV--IEEEVGEEFLYGAESGWVEALTSCDHLPSLCSDLAHIPPPDTACCESFHDLENAYLFEQSTYARCENPKENWLCLCCKNV
        MA EAGSSS  SN  P +  IE+EV EE LYGA SGWV+ALTSCDHL SL SDLAHIPPP T C                  ++C+NPKENWLCLCCK+V
Subjt:  MANEAGSSS--SNPAPCV--IEEEVGEEFLYGAESGWVEALTSCDHLPSLCSDLAHIPPPDTACCESFHDLENAYLFEQSTYARCENPKENWLCLCCKNV

Query:  FCSRFVNKHMLQHYQQSNHSLALSYSDLSVWCFSCDAYLDAQLIQELRPVHEVAYILKFGEAPPFR
        FCSRFVNKHMLQHY+QS H LALSYSDLSVWCFSCDAYLDAQ+IQELRPVHEVAYILKFGEAPPFR
Subjt:  FCSRFVNKHMLQHYQQSNHSLALSYSDLSVWCFSCDAYLDAQLIQELRPVHEVAYILKFGEAPPFR

A0A5A7TNA2 Histone deacetylase 68.4e-6172.89Show/hide
Query:  MANEAGSSS--SNPAPCV--IEEEVGEEFLYGAESGWVEALTSCDHLPSLCSDLAHIPPPDTACCESFHDLENAYLFEQSTYARCENPKENWLCLCCKNV
        MA EAGSSS  SN  P +  IE+EV EE LYGA SGWV+ALTSCDHL SL SDLAHIPPP T C                  ++C+NPKENWLCLCCK+V
Subjt:  MANEAGSSS--SNPAPCV--IEEEVGEEFLYGAESGWVEALTSCDHLPSLCSDLAHIPPPDTACCESFHDLENAYLFEQSTYARCENPKENWLCLCCKNV

Query:  FCSRFVNKHMLQHYQQSNHSLALSYSDLSVWCFSCDAYLDAQLIQELRPVHEVAYILKFGEAPPFR
        FCSRFVNKHMLQHY+QS H LALSYSDLSVWCFSCDAYLDAQ+IQELRPVHEVAYILKFGE PPFR
Subjt:  FCSRFVNKHMLQHYQQSNHSLALSYSDLSVWCFSCDAYLDAQLIQELRPVHEVAYILKFGEAPPFR

A0A6J1D695 histone deacetylase 61.6e-6477.16Show/hide
Query:  MANEAGSSSSNPAPCVIEEEVGEEFLYGAESGWVEALTSCDHLPSLCSDLAHIPPPDTACCESFHDLENAYLFEQSTYARCENPKENWLCLCCKNVFCSR
        MANEAGSSSSN  PC+IEEE GEE L+GAE+GWVEALT CDHL SL SDLAHIP PDTAC E                  C+NPKENWLCLCCKN+ CSR
Subjt:  MANEAGSSSSNPAPCVIEEEVGEEFLYGAESGWVEALTSCDHLPSLCSDLAHIPPPDTACCESFHDLENAYLFEQSTYARCENPKENWLCLCCKNVFCSR

Query:  FVNKHMLQHYQQSNHSLALSYSDLSVWCFSCDAYLDAQLIQELRPVHEVAYILKFGEAPPFR
        FVNKHMLQHYQQS H LALSYSDLSVWCFSCDAYLDAQ+IQELRPV+EVAYILKFGEAPPFR
Subjt:  FVNKHMLQHYQQSNHSLALSYSDLSVWCFSCDAYLDAQLIQELRPVHEVAYILKFGEAPPFR

A0A6J1FUZ8 BTB/POZ domain-containing protein NPY2-like isoform X22.5e-6579.49Show/hide
Query:  SSSSNPAPCVIEEEVGEEFLYGAESGWVEALTSCDHLPSLCSDLAHIPPPDTACCESFHDLENAYLFEQSTYARCENPKENWLCLCCKNVFCSRFVNKHM
        S SS P      +++ +EFLYGAESGWVEALTSCDHLPSLCSDLAHIPPPDTACCE                  CENPKENWLCLCCKNVFCSRFVNKHM
Subjt:  SSSSNPAPCVIEEEVGEEFLYGAESGWVEALTSCDHLPSLCSDLAHIPPPDTACCESFHDLENAYLFEQSTYARCENPKENWLCLCCKNVFCSRFVNKHM

Query:  LQHYQQSNHSLALSYSDLSVWCFSCDAYLDAQLIQELRPVHEVAYILKFGEAPPFR
        LQHYQQSNHSLALSYSDLSVWCFSCDAYLDAQLIQELRPVHEVAYILKFGE PPFR
Subjt:  LQHYQQSNHSLALSYSDLSVWCFSCDAYLDAQLIQELRPVHEVAYILKFGEAPPFR

SwissProt top hitse value%identityAlignment
Q20296 Histone deacetylase 62.1e-1335.29Show/hide
Query:  AESGWVEALTSCDH-LPSLCSDLAHIPPPDTAC--CESFHDLENAYLFEQSTYARCENPKENWLCLCCKNVFCSRFVNKHMLQHYQQSNHSLALSYSDLS
        + SG   + T   H L  + S  AH   P   C   +    L  A +  ++  + C+   E W CL C    C RFVN+H + H+  S+H +ALS +DLS
Subjt:  AESGWVEALTSCDH-LPSLCSDLAHIPPPDTAC--CESFHDLENAYLFEQSTYARCENPKENWLCLCCKNVFCSRFVNKHMLQHYQQSNHSLALSYSDLS

Query:  VWCFSCDAYL-DAQLIQELRPVHEVAYILKFGEAPP
        VWC+ CD+Y+ +  LI      HE     KFGE  P
Subjt:  VWCFSCDAYL-DAQLIQELRPVHEVAYILKFGEAPP

Q54QE6 NAD-dependent deacetylase sir2A2.9e-1043.64Show/hide
Query:  CENPKENWLCLCCKNVFCSRFVNKHMLQHYQQSNHSLALSYSDLSVWCFSCDAYL
        C +  ENW+C+ C  V CSR VN H  +H++ + H ++ S+SD S WC++CD Y+
Subjt:  CENPKENWLCLCCKNVFCSRFVNKHMLQHYQQSNHSLALSYSDLSVWCFSCDAYL

Q7ZUM8 Ubiquitin carboxyl-terminal hydrolase 441.2e-0840Show/hide
Query:  CENPKENWLCLCCKNVFCSRFVNKHMLQHYQQSNHSLALSYSDLSVWCFSCDAYL
        C   +  W CL C +V C R++ +H LQH+++ +H LAL  ++L V+C+ CD Y+
Subjt:  CENPKENWLCLCCKNVFCSRFVNKHMLQHYQQSNHSLALSYSDLSVWCFSCDAYL

Q9UBN7 Histone deacetylase 66.0e-1647.5Show/hide
Query:  CENPKENWLCLCCKNVFCSRFVNKHMLQHYQQSNHSLALSYSDLSVWCFSCDAYLDAQLIQELRPVHEVAYILKFGEAPP
        C   +ENW+CL C  V+C R++N HMLQH+  S H L LSY DLS WC+ C AY+  Q + +   V  +A+  KFGE  P
Subjt:  CENPKENWLCLCCKNVFCSRFVNKHMLQHYQQSNHSLALSYSDLSVWCFSCDAYLDAQLIQELRPVHEVAYILKFGEAPP

Q9Z2V5 Histone deacetylase 68.7e-1546.25Show/hide
Query:  CENPKENWLCLCCKNVFCSRFVNKHMLQHYQQSNHSLALSYSDLSVWCFSCDAYLDAQLIQELRPVHEVAYILKFGEAPP
        C   +ENW+CL C  V+CSR+VN HM+ H++ S H L LS  DLS WC+ C AY+     ++L+ V   A+  KFGE  P
Subjt:  CENPKENWLCLCCKNVFCSRFVNKHMLQHYQQSNHSLALSYSDLSVWCFSCDAYLDAQLIQELRPVHEVAYILKFGEAPP

Arabidopsis top hitse value%identityAlignment
AT2G14830.1 Regulator of Vps4 activity in the MVB pathway protein3.5e-1137.63Show/hide
Query:  MANEAGSSSSNPAPCVIEEEVGEEFLYGAESGWVEALTSCDHLPSLCSDLAHIPPPDTACC---ESFHDLENAYLFEQSTYARCENPKENWLC
        MA +A SSSS+ +P     +  ++++ GA SGWVEA  +CDHL +L  DL H+P PDT C     + HD    +LF     ++C++  +   C
Subjt:  MANEAGSSSSNPAPCVIEEEVGEEFLYGAESGWVEALTSCDHLPSLCSDLAHIPPPDTACC---ESFHDLENAYLFEQSTYARCENPKENWLC

AT2G14830.2 Regulator of Vps4 activity in the MVB pathway protein2.9e-5057.5Show/hide
Query:  MANEAGSSSSNPAPCVIEEEVGEEFLYGAESGWVEALTSCDHLPSLCSDLAHIPPPDTACCESFHDLENAYLFEQSTYARCENPKENWLCLCCKNVFCSR
        MA +A SSSS+ +P     +  ++++ GA SGWVEA  +CDHL +L  DL H+P PDT C                  +RC+NP ENWLCLCCK V CSR
Subjt:  MANEAGSSSSNPAPCVIEEEVGEEFLYGAESGWVEALTSCDHLPSLCSDLAHIPPPDTACCESFHDLENAYLFEQSTYARCENPKENWLCLCCKNVFCSR

Query:  FVNKHMLQHYQQSNHSLALSYSDLSVWCFSCDAYLDAQLIQELRPVHEVAYILKFGEAPP
        FVN+HML H+QQ+ H LALSYSDLSVWCF C+AYLDAQ+I +LRP+H+ AYILKFGEAPP
Subjt:  FVNKHMLQHYQQSNHSLALSYSDLSVWCFSCDAYLDAQLIQELRPVHEVAYILKFGEAPP

AT2G26000.1 zinc finger (C3HC4-type RING finger) family protein8.4e-0525.96Show/hide
Query:  TSCDHLPSLCSDLAHIPPPDTACCESFHDLENAYLFEQSTYARCENPKENWLCLCCKNVFCSRFVNKHMLQHYQQSNHSLALSYSDLSVWCFSCDAYLDA
        T C+H    CS +++ P      C            E S    C+  +  W+C+ C  V C R+   H  +H++++ H  +L      VW ++ D Y+  
Subjt:  TSCDHLPSLCSDLAHIPPPDTACCESFHDLENAYLFEQSTYARCENPKENWLCLCCKNVFCSRFVNKHMLQHYQQSNHSLALSYSDLSVWCFSCDAYLDA

Query:  QLIQ
        +LIQ
Subjt:  QLIQ

AT2G26000.2 zinc finger (C3HC4-type RING finger) family protein8.4e-0525.96Show/hide
Query:  TSCDHLPSLCSDLAHIPPPDTACCESFHDLENAYLFEQSTYARCENPKENWLCLCCKNVFCSRFVNKHMLQHYQQSNHSLALSYSDLSVWCFSCDAYLDA
        T C+H    CS +++ P      C            E S    C+  +  W+C+ C  V C R+   H  +H++++ H  +L      VW ++ D Y+  
Subjt:  TSCDHLPSLCSDLAHIPPPDTACCESFHDLENAYLFEQSTYARCENPKENWLCLCCKNVFCSRFVNKHMLQHYQQSNHSLALSYSDLSVWCFSCDAYLDA

Query:  QLIQ
        +LIQ
Subjt:  QLIQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAAACGAAGCCGGCTCCTCCTCCTCCAACCCAGCGCCATGCGTAATCGAAGAGGAAGTTGGAGAAGAGTTCTTGTACGGTGCTGAATCGGGATGGGTCGAAGCTTT
GACTTCTTGTGATCATCTTCCTTCGCTGTGTTCCGACCTTGCTCATATTCCACCCCCTGATACTGCCTGCTGCGAGTCATTTCATGATTTGGAAAACGCCTATTTATTTG
AACAATCTACTTATGCAAGATGTGAGAATCCCAAGGAGAACTGGTTGTGTTTATGCTGTAAGAATGTCTTCTGTAGTCGTTTTGTGAACAAGCACATGCTTCAACATTAT
CAGCAATCAAATCATAGTCTTGCACTCAGCTACAGTGATTTGTCAGTTTGGTGTTTCTCCTGCGATGCATATTTAGATGCGCAACTGATCCAGGAATTACGACCAGTACA
CGAAGTTGCCTATATACTAAAATTCGGCGAGGCCCCGCCATTTCGATAG
mRNA sequenceShow/hide mRNA sequence
ATGGCAAACGAAGCCGGCTCCTCCTCCTCCAACCCAGCGCCATGCGTAATCGAAGAGGAAGTTGGAGAAGAGTTCTTGTACGGTGCTGAATCGGGATGGGTCGAAGCTTT
GACTTCTTGTGATCATCTTCCTTCGCTGTGTTCCGACCTTGCTCATATTCCACCCCCTGATACTGCCTGCTGCGAGTCATTTCATGATTTGGAAAACGCCTATTTATTTG
AACAATCTACTTATGCAAGATGTGAGAATCCCAAGGAGAACTGGTTGTGTTTATGCTGTAAGAATGTCTTCTGTAGTCGTTTTGTGAACAAGCACATGCTTCAACATTAT
CAGCAATCAAATCATAGTCTTGCACTCAGCTACAGTGATTTGTCAGTTTGGTGTTTCTCCTGCGATGCATATTTAGATGCGCAACTGATCCAGGAATTACGACCAGTACA
CGAAGTTGCCTATATACTAAAATTCGGCGAGGCCCCGCCATTTCGATAGGCTTAATCTTCCTGCAGGGAGACTTAAATTTGAGACTTGTGTTGTAATTTTTATAGTCTTG
ATATCTTTAGGTGTCTTGGTCTCTTAGTTTGAGGAAGTGAGCATTTCAAAATGTGATGTTCTTCACATGAATTGGGTTGAGCTTGTCAGAGGTTCATGATGGGTTGCTGA
TTGTTTCTTTTACAGAGATACGAGGGACAAAAAGTTGGAATCTCCTATCTTGTTCAGGAAAATTTTAGGGACTTCTTACAAATCTTGATGATAAATCAAATTGGTTCTCA
CAGTTTCAACTATCTAGCAAAATATATCTCTTTT
Protein sequenceShow/hide protein sequence
MANEAGSSSSNPAPCVIEEEVGEEFLYGAESGWVEALTSCDHLPSLCSDLAHIPPPDTACCESFHDLENAYLFEQSTYARCENPKENWLCLCCKNVFCSRFVNKHMLQHY
QQSNHSLALSYSDLSVWCFSCDAYLDAQLIQELRPVHEVAYILKFGEAPPFR