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Carg08176 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg08176
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptioncytochrome b-c1 complex subunit 6-like
Genome locationCarg_Chr04:2686514..2690327
RNA-Seq ExpressionCarg08176
SyntenyCarg08176
Gene Ontology termsGO:0006122 - mitochondrial electron transport, ubiquinol to cytochrome c (biological process)
GO:0005750 - mitochondrial respiratory chain complex III (cellular component)
InterPro domainsIPR003422 - Cytochrome b-c1 complex, subunit 6
IPR023184 - Ubiquinol-cytochrome C reductase hinge domain
IPR036811 - Ubiquinol-cytochrome C reductase hinge domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6600342.1 Cytochrome b-c1 complex subunit 6-1, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]1.1e-3664.06Show/hide
Query:  MDPAREQRNRKVEALSNCNFSTSKLNLNRVTDSLRGSCFSSKNGIKFNEYHYLPHRQFNLADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSG
        MDPAREQRNRK++     +F+ S+  L                                +ADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSG
Subjt:  MDPAREQRNRKVEALSNCNFSTSKLNLNRVTDSLRGSCFSSKNGIKFNEYHYLPHRQFNLADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSG

Query:  HKHCTGQYFDYWSCVDKCVAPKLFTKIK
        HKHCTGQYFDYWSCVDKCVAPKLFTKIK
Subjt:  HKHCTGQYFDYWSCVDKCVAPKLFTKIK

KAG7014985.1 hypothetical protein SDJN02_22616, partial [Cucurbita argyrosperma subsp. argyrosperma]6.4e-3482.14Show/hide
Query:  FNEYHYLPHRQFNL--ADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCVDKCVAPKLFTKIK
        F  Y + P + + L  ADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGD+SGHKHCTGQYFDYWSC+DKCVAPKLFTK+K
Subjt:  FNEYHYLPHRQFNL--ADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCVDKCVAPKLFTKIK

KAG7030998.1 hypothetical protein SDJN02_05037 [Cucurbita argyrosperma subsp. argyrosperma]2.5e-70100Show/hide
Query:  MDPAREQRNRKVEALSNCNFSTSKLNLNRVTDSLRGSCFSSKNGIKFNEYHYLPHRQFNLADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSG
        MDPAREQRNRKVEALSNCNFSTSKLNLNRVTDSLRGSCFSSKNGIKFNEYHYLPHRQFNLADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSG
Subjt:  MDPAREQRNRKVEALSNCNFSTSKLNLNRVTDSLRGSCFSSKNGIKFNEYHYLPHRQFNLADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSG

Query:  HKHCTGQYFDYWSCVDKCVAPKLFTKIK
        HKHCTGQYFDYWSCVDKCVAPKLFTKIK
Subjt:  HKHCTGQYFDYWSCVDKCVAPKLFTKIK

XP_022942987.1 cytochrome b-c1 complex subunit 6-like [Cucurbita moschata]2.9e-3498.55Show/hide
Query:  LADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCVDKCVAPKLFTKIK
        +ADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCVDKCVAPKLFTKIK
Subjt:  LADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCVDKCVAPKLFTKIK

XP_022983580.1 cytochrome b-c1 complex subunit 6-like [Cucurbita maxima]2.9e-3498.55Show/hide
Query:  LADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCVDKCVAPKLFTKIK
        +ADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCVDKCVAPKLFTKIK
Subjt:  LADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCVDKCVAPKLFTKIK

TrEMBL top hitse value%identityAlignment
A0A0A0L6I2 UCR_hinge domain-containing protein9.0e-3495.65Show/hide
Query:  LADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCVDKCVAPKLFTKIK
        LADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSC+DKCVAPKL TK+K
Subjt:  LADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCVDKCVAPKLFTKIK

A0A1S3C350 Cytochrome b-c1 complex subunit 63.1e-3495.65Show/hide
Query:  LADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCVDKCVAPKLFTKIK
        +ADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSC+DKCVAPKLFTK+K
Subjt:  LADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCVDKCVAPKLFTKIK

A0A6J1FRR8 cytochrome b-c1 complex subunit 6-like1.4e-3498.55Show/hide
Query:  LADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCVDKCVAPKLFTKIK
        +ADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCVDKCVAPKLFTKIK
Subjt:  LADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCVDKCVAPKLFTKIK

A0A6J1J694 Cytochrome b-c1 complex subunit 61.4e-3498.55Show/hide
Query:  LADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCVDKCVAPKLFTKIK
        +ADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCVDKCVAPKLFTKIK
Subjt:  LADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCVDKCVAPKLFTKIK

A0A6J1J7A4 Cytochrome b-c1 complex subunit 69.0e-3494.2Show/hide
Query:  LADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCVDKCVAPKLFTKIK
        +ADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGD+SGHKHCTGQYFDYWSC+DKCVAPKLFTK+K
Subjt:  LADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCVDKCVAPKLFTKIK

SwissProt top hitse value%identityAlignment
P48504 Cytochrome b-c1 complex subunit 61.5e-2569.57Show/hide
Query:  LADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCVDKCVAPKLFTKIK
        ++DEE VD K  LE +CKPKCV+ L EYQAC KR++GD+SGHKHCTGQYFDYW C+DKCVA KLF  +K
Subjt:  LADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCVDKCVAPKLFTKIK

Q0WWE3 Cytochrome b-c1 complex subunit 6-1, mitochondrial5.6e-3385.51Show/hide
Query:  LADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCVDKCVAPKLFTKIK
        +AD+E VD K+YLEE+CKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYW C+DKCVAPKLF K+K
Subjt:  LADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCVDKCVAPKLFTKIK

Q1ZXP3 Probable cytochrome b-c1 complex subunit 69.0e-0739.66Show/hide
Query:  LEEACKPKCVKPLLEYQACVKRIQGDDSGHK-HCTGQYFDYWSCVDKCVAPKLFTKIK
        ++E C   C K    YQAC  R+   +   K +C GQ+ ++  C+DKCV PKLF ++K
Subjt:  LEEACKPKCVKPLLEYQACVKRIQGDDSGHK-HCTGQYFDYWSCVDKCVAPKLFTKIK

Q9SJV7 Cytochrome b-c1 complex subunit 6-2, mitochondrial7.8e-2781.97Show/hide
Query:  LADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCVDKCVA
        + +E+ VDQKRY EE+CKPKCVKPLLEYQACVKRIQ D+SGHKHCTGQYFDYW CVDKCV+
Subjt:  LADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCVDKCVA

Arabidopsis top hitse value%identityAlignment
AT1G15120.1 Ubiquinol-cytochrome C reductase hinge protein4.0e-3485.51Show/hide
Query:  LADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCVDKCVAPKLFTKIK
        +AD+E VD K+YLEE+CKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYW C+DKCVAPKLF K+K
Subjt:  LADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCVDKCVAPKLFTKIK

AT1G15120.2 Ubiquinol-cytochrome C reductase hinge protein2.7e-3068.75Show/hide
Query:  FSSKNGIKFNEYHYLPHRQFNLADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCVDKC
        F S++ +  + + +     FN+AD+E VD K+YLEE+CKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYW C+DKC
Subjt:  FSSKNGIKFNEYHYLPHRQFNLADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCVDKC

AT2G01090.1 Ubiquinol-cytochrome C reductase hinge protein5.6e-2881.97Show/hide
Query:  LADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCVDKCVA
        + +E+ VDQKRY EE+CKPKCVKPLLEYQACVKRIQ D+SGHKHCTGQYFDYW CVDKCV+
Subjt:  LADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCVDKCVA

AT2G01090.2 Ubiquinol-cytochrome C reductase hinge protein5.6e-2881.97Show/hide
Query:  LADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCVDKCVA
        + +E+ VDQKRY EE+CKPKCVKPLLEYQACVKRIQ D+SGHKHCTGQYFDYW CVDKCV+
Subjt:  LADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCVDKCVA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATCCGGCCCGAGAGCAAAGGAACCGGAAAGTGGAAGCTTTGTCAAATTGCAATTTCTCGACTTCGAAACTAAACCTAAACAGAGTTACTGATTCTCTCCGAGGTTC
GTGCTTCAGCTCCAAGAATGGAATTAAGTTTAACGAGTACCATTACCTACCTCATAGGCAGTTTAATTTGGCAGATGAAGAACCCGTCGATCAGAAGAGGTATCTTGAAG
AAGCTTGCAAGCCCAAGTGTGTGAAACCACTACTTGAATACCAGGCATGCGTGAAGAGAATCCAAGGGGATGACAGTGGCCATAAGCATTGCACTGGACAATATTTTGAT
TACTGGTCTTGCGTCGACAAATGTGTTGCACCAAAACTATTTACGAAAATAAAGTAA
mRNA sequenceShow/hide mRNA sequence
TCTTGATATGGCAAACACTGCATTGATGCTCGCTTCTAATCATCTGTAGCTTTGGTCTTTATTTGTCTTGATATCCAGTTCGACGCTGTTTTTCAAGCATATGACGGTCT
AGATAACTTCTTGTAAAGCCAGTCATTTCAGTGTGGTAACCATTCCGTTTTTAAAAGACGTGCTTGTTTGCATGTCGTTTTTGTACGATGTGATGTATTTCTTTCCCAAT
AGTAAAAACTTAAGTGATTTGTTTAGAGTATATAATAATGATTTTAAGACTAAAAATGGTACCCGACCCGACCCGAAATGGATCCGGCCCGAGAGCAAAGGAACCGGAAA
GTGGAAGCTTTGTCAAATTGCAATTTCTCGACTTCGAAACTAAACCTAAACAGAGTTACTGATTCTCTCCGAGGTTCGTGCTTCAGCTCCAAGAATGGAATTAAGTTTAA
CGAGTACCATTACCTACCTCATAGGCAGTTTAATTTGGCAGATGAAGAACCCGTCGATCAGAAGAGGTATCTTGAAGAAGCTTGCAAGCCCAAGTGTGTGAAACCACTAC
TTGAATACCAGGCATGCGTGAAGAGAATCCAAGGGGATGACAGTGGCCATAAGCATTGCACTGGACAATATTTTGATTACTGGTCTTGCGTCGACAAATGTGTTGCACCA
AAACTATTTACGAAAATAAAGTAAATGGAGAGTTAGGCATGTGGAGGTGTTCCTATCCTTTTGGTTGCAGCAGCATTTTTCTGATTTTTTATGCAATGCCTTTTTGTGTA
CTTCATCTTTGCATCTACAAAAAATGCCAAGAACTTTGCAAAAAACTATGAAGACCTTAGCCATCATCAATAAGAAAGGACGTTGGATTGTATGAACACACTTCTTCCCT
TAATTTCATTTTATGATTGCTTTATTAACATTAAATGGCTGTGCTGTTTATCCCACATTGAATGCTGTTTAGCAAATGGCTGTGCTGTTTGATGTTTTCAAATAATTGAA
TGATCAGTAGTATGATCCTATTTCTGTTGCTGGTTCCAAGATTTGTTCCTCGATCGAAGAGCGAGGTAGTTGTAATGCGCTTTAATCAGTTGATTTATGTTTTTTAGA
Protein sequenceShow/hide protein sequence
MDPAREQRNRKVEALSNCNFSTSKLNLNRVTDSLRGSCFSSKNGIKFNEYHYLPHRQFNLADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFD
YWSCVDKCVAPKLFTKIK