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Carg08186 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg08186
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionserine/arginine-rich splicing factor SC35-like
Genome locationCarg_Chr05:2546710..2547303
RNA-Seq ExpressionCarg08186
SyntenyCarg08186
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0016607 - nuclear speck (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6598682.1 Serine/arginine-rich splicing factor SC35, partial [Cucurbita argyrosperma subsp. sororia]2.9e-3897.53Show/hide
Query:  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGQL
        MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDG++
Subjt:  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGQL

KAG7029627.1 Serine/arginine-rich splicing factor SC35 [Cucurbita argyrosperma subsp. argyrosperma]2.3e-43100Show/hide
Query:  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGQLQFDENSH
        MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGQLQFDENSH
Subjt:  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGQLQFDENSH

XP_022952012.1 serine/arginine-rich splicing factor SC35-like isoform X1 [Cucurbita moschata]2.9e-3897.53Show/hide
Query:  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGQL
        MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDG++
Subjt:  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGQL

XP_023002671.1 serine/arginine-rich splicing factor SC35-like isoform X1 [Cucurbita maxima]2.9e-3897.53Show/hide
Query:  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGQL
        MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDG++
Subjt:  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGQL

XP_023538161.1 serine/arginine-rich splicing factor SC35-like isoform X1 [Cucurbita pepo subsp. pepo]2.9e-3897.53Show/hide
Query:  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGQL
        MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDG++
Subjt:  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGQL

TrEMBL top hitse value%identityAlignment
A0A5A7VC44 Serine/arginine-rich splicing factor SC35-like1.4e-3897.53Show/hide
Query:  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGQL
        MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDG++
Subjt:  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGQL

A0A6J1K4H2 serine/arginine-rich splicing factor SC35-like isoform X21.4e-3897.53Show/hide
Query:  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGQL
        MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDG++
Subjt:  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGQL

A0A6J1K6Z8 serine/arginine-rich splicing factor SC35-like isoform X11.4e-3897.53Show/hide
Query:  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGQL
        MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDG++
Subjt:  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGQL

A0A6J1KK62 serine/arginine-rich splicing factor SC35-like isoform X21.4e-3897.53Show/hide
Query:  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGQL
        MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDG++
Subjt:  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGQL

A0A6J1KLY6 serine/arginine-rich splicing factor SC35-like isoform X11.4e-3897.53Show/hide
Query:  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGQL
        MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDG++
Subjt:  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGQL

SwissProt top hitse value%identityAlignment
P30352 Serine/arginine-rich splicing factor 22.8e-1552.63Show/hide
Query:  FGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDG
        +GR  PPD+    SL V N+T+RT+ D L  +F+KYG+V DV+IPRDR T +SRGFAFVR+    +A+ A+D +DG
Subjt:  FGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDG

Q01130 Serine/arginine-rich splicing factor 22.8e-1552.63Show/hide
Query:  FGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDG
        +GR  PPD+    SL V N+T+RT+ D L  +F+KYG+V DV+IPRDR T +SRGFAFVR+    +A+ A+D +DG
Subjt:  FGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDG

Q3MHR5 Serine/arginine-rich splicing factor 22.8e-1552.63Show/hide
Query:  FGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDG
        +GR  PPD+    SL V N+T+RT+ D L  +F+KYG+V DV+IPRDR T +SRGFAFVR+    +A+ A+D +DG
Subjt:  FGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDG

Q62093 Serine/arginine-rich splicing factor 22.8e-1552.63Show/hide
Query:  FGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDG
        +GR  PPD+    SL V N+T+RT+ D L  +F+KYG+V DV+IPRDR T +SRGFAFVR+    +A+ A+D +DG
Subjt:  FGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDG

Q9FMG4 Serine/arginine-rich splicing factor SC352.6e-3788.89Show/hide
Query:  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGQL
        MSHFGRSGPPDI DTYSLLVLNITFRTTADDLYPLF KYGKVVDVFIPRDRRTGDSRGFAFVRYKY DEA KA+++LDG++
Subjt:  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGQL

Arabidopsis top hitse value%identityAlignment
AT3G11400.1 eukaryotic translation initiation factor 3G18.9e-0942.42Show/hide
Query:  DTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDG
        D  S+ V N++  T   DL  LF  +G V  V++  D++TG SRGF FV +   ++AQ+AI+KL+G
Subjt:  DTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDG

AT3G13570.1 SC35-like splicing factor 30A6.8e-0938.46Show/hide
Query:  FGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGQL
        FG S   D+    SLLV N+      +DL   F+++G V D+++PRD  TGD RGF F+++    +A +A  ++DG L
Subjt:  FGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGQL

AT5G18810.1 SC35-like splicing factor 284.0e-0936.07Show/hide
Query:  LLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLD
        LL+ N+      +DL   F+++G + D+++PR+  TG+ RGF FV+Y+YA++A +A+ +++
Subjt:  LLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLD

AT5G64200.1 ortholog of human splicing factor SC351.8e-3888.89Show/hide
Query:  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGQL
        MSHFGRSGPPDI DTYSLLVLNITFRTTADDLYPLF KYGKVVDVFIPRDRRTGDSRGFAFVRYKY DEA KA+++LDG++
Subjt:  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGQL

AT5G64200.2 ortholog of human splicing factor SC351.8e-3888.89Show/hide
Query:  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGQL
        MSHFGRSGPPDI DTYSLLVLNITFRTTADDLYPLF KYGKVVDVFIPRDRRTGDSRGFAFVRYKY DEA KA+++LDG++
Subjt:  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGQL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGCACTTCGGAAGATCCGGTCCTCCCGACATCAGAGATACCTACTCGCTTCTCGTCCTCAACATCACTTTCCGAACCACCGCCGATGATCTTTACCCCCTTTTCGA
TAAGTATGGAAAGGTCGTCGATGTCTTCATCCCCAGAGACCGCAGGACTGGGGATTCCCGAGGATTTGCGTTTGTTCGATATAAGTATGCGGATGAAGCACAGAAGGCAA
TTGACAAGCTTGACGGTCAGCTTCAGTTCGACGAAAATTCACATTAG
mRNA sequenceShow/hide mRNA sequence
AATATATGTTGGAATCTCTTGTTCCATCAGAGACCTAGTTGAGCTTGAGCCCTGAATCCGCCGCTGCTGCTCGTCACTCTCTCCATAGCTGAATCCATTAGTTGCAGAGA
GAAATGTCGCACTTCGGAAGATCCGGTCCTCCCGACATCAGAGATACCTACTCGCTTCTCGTCCTCAACATCACTTTCCGAACCACCGCCGATGATCTTTACCCCCTTTT
CGATAAGTATGGAAAGGTCGTCGATGTCTTCATCCCCAGAGACCGCAGGACTGGGGATTCCCGAGGATTTGCGTTTGTTCGATATAAGTATGCGGATGAAGCACAGAAGG
CAATTGACAAGCTTGACGGTCAGCTTCAGTTCGACGAAAATTCACATTAG
Protein sequenceShow/hide protein sequence
MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGQLQFDENSH