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Carg08224 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg08224
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionCHCH domain-containing protein
Genome locationCarg_Chr05:2751902..2755517
RNA-Seq ExpressionCarg08224
SyntenyCarg08224
Gene Ontology termsGO:0007005 - mitochondrion organization (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005739 - mitochondrion (cellular component)
InterPro domainsIPR009069 - Cysteine alpha-hairpin motif superfamily
IPR010625 - CHCH


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6598722.1 Protein SABRE, partial [Cucurbita argyrosperma subsp. sororia]2.9e-67100Show/hide
Query:  MPRRSSGGRSASRPAPRAPPRNTPAPAHSAPPPAPVQGGGGGSMLGGLGATIAQGMAFGTGSAVAHRAVDAVMGPRVIQHETVDSSTPSSAPSVASNPGG
        MPRRSSGGRSASRPAPRAPPRNTPAPAHSAPPPAPVQGGGGGSMLGGLGATIAQGMAFGTGSAVAHRAVDAVMGPRVIQHETVDSSTPSSAPSVASNPGG
Subjt:  MPRRSSGGRSASRPAPRAPPRNTPAPAHSAPPPAPVQGGGGGSMLGGLGATIAQGMAFGTGSAVAHRAVDAVMGPRVIQHETVDSSTPSSAPSVASNPGG

Query:  SDACNVQSKSFQDCLNHYGSDISKCQFYLDMLQECRKSS
        SDACNVQSKSFQDCLNHYGSDISKCQFYLDMLQECRKSS
Subjt:  SDACNVQSKSFQDCLNHYGSDISKCQFYLDMLQECRKSS

XP_011649682.1 hemiasterlin resistant protein 1 [Cucumis sativus]9.7e-6393.79Show/hide
Query:  MPRRSSGGRSASRPAPRAPPRNTPAPAHSAPPPAPVQGGGGGSMLGGLGATIAQGMAFGTGSAVAHRAVDAVMGPRVIQHETVDSSTPSSAPSVASNPGG
        MPRRSSGGRSASRPAPRAP RN PAPA  APPPAPVQGGGGGSMLGGLGATIAQGMAFGTGSAVAHRAVDAVMGPR IQHETVDSS  SSAPSVASN GG
Subjt:  MPRRSSGGRSASRPAPRAPPRNTPAPAHSAPPPAPVQGGGGGSMLGGLGATIAQGMAFGTGSAVAHRAVDAVMGPRVIQHETVDSSTPSSAPSVASNPGG

Query:  SDACNVQSKSFQDCLNHYGSDISKCQFYLDMLQECRKSSGSVLGA
        SDACNVQSKSFQDCLNHYGSDISKCQFYLDMLQECR+SSGSVLGA
Subjt:  SDACNVQSKSFQDCLNHYGSDISKCQFYLDMLQECRKSSGSVLGA

XP_022962551.1 coiled-coil-helix-coiled-coil-helix domain-containing protein 10, mitochondrial [Cucurbita moschata]1.3e-70100Show/hide
Query:  MPRRSSGGRSASRPAPRAPPRNTPAPAHSAPPPAPVQGGGGGSMLGGLGATIAQGMAFGTGSAVAHRAVDAVMGPRVIQHETVDSSTPSSAPSVASNPGG
        MPRRSSGGRSASRPAPRAPPRNTPAPAHSAPPPAPVQGGGGGSMLGGLGATIAQGMAFGTGSAVAHRAVDAVMGPRVIQHETVDSSTPSSAPSVASNPGG
Subjt:  MPRRSSGGRSASRPAPRAPPRNTPAPAHSAPPPAPVQGGGGGSMLGGLGATIAQGMAFGTGSAVAHRAVDAVMGPRVIQHETVDSSTPSSAPSVASNPGG

Query:  SDACNVQSKSFQDCLNHYGSDISKCQFYLDMLQECRKSSGSVLGA
        SDACNVQSKSFQDCLNHYGSDISKCQFYLDMLQECRKSSGSVLGA
Subjt:  SDACNVQSKSFQDCLNHYGSDISKCQFYLDMLQECRKSSGSVLGA

XP_022997290.1 coiled-coil-helix-coiled-coil-helix domain-containing protein 10, mitochondrial-like [Cucurbita maxima]4.1e-6998.62Show/hide
Query:  MPRRSSGGRSASRPAPRAPPRNTPAPAHSAPPPAPVQGGGGGSMLGGLGATIAQGMAFGTGSAVAHRAVDAVMGPRVIQHETVDSSTPSSAPSVASNPGG
        MPRRSSGGRSASRPAPRAPPRNTPAPA+SAPPPAPVQGGGGGSMLGGLGATIAQGMAFGTGSAVAHRAVDAVMGPRVIQHETVDSSTPSSAPSVA NPGG
Subjt:  MPRRSSGGRSASRPAPRAPPRNTPAPAHSAPPPAPVQGGGGGSMLGGLGATIAQGMAFGTGSAVAHRAVDAVMGPRVIQHETVDSSTPSSAPSVASNPGG

Query:  SDACNVQSKSFQDCLNHYGSDISKCQFYLDMLQECRKSSGSVLGA
        SDACNVQSKSFQDCLNHYGSDISKCQFYLDMLQECRKSSGSVLGA
Subjt:  SDACNVQSKSFQDCLNHYGSDISKCQFYLDMLQECRKSSGSVLGA

XP_038886373.1 coiled-coil-helix-coiled-coil-helix domain-containing protein 10, mitochondrial-like [Benincasa hispida]1.1e-6393.79Show/hide
Query:  MPRRSSGGRSASRPAPRAPPRNTPAPAHSAPPPAPVQGGGGGSMLGGLGATIAQGMAFGTGSAVAHRAVDAVMGPRVIQHETVDSSTPSSAPSVASNPGG
        MPRRSSGGRSASRPAPRAP RN PAPA SAPPPAPVQGGGGGSMLGGLGATIAQGMAFGTGSAVAHRAVDAVMGPR IQHET+DSST SSAPSVA+NPGG
Subjt:  MPRRSSGGRSASRPAPRAPPRNTPAPAHSAPPPAPVQGGGGGSMLGGLGATIAQGMAFGTGSAVAHRAVDAVMGPRVIQHETVDSSTPSSAPSVASNPGG

Query:  SDACNVQSKSFQDCLNHYGSDISKCQFYLDMLQECRKSSGSVLGA
        SDAC VQSKSFQDCLNHYGSDISKCQFYLDMLQECR+SSGSVLGA
Subjt:  SDACNVQSKSFQDCLNHYGSDISKCQFYLDMLQECRKSSGSVLGA

TrEMBL top hitse value%identityAlignment
A0A0A0LNY2 CHCH domain-containing protein4.7e-6393.79Show/hide
Query:  MPRRSSGGRSASRPAPRAPPRNTPAPAHSAPPPAPVQGGGGGSMLGGLGATIAQGMAFGTGSAVAHRAVDAVMGPRVIQHETVDSSTPSSAPSVASNPGG
        MPRRSSGGRSASRPAPRAP RN PAPA  APPPAPVQGGGGGSMLGGLGATIAQGMAFGTGSAVAHRAVDAVMGPR IQHETVDSS  SSAPSVASN GG
Subjt:  MPRRSSGGRSASRPAPRAPPRNTPAPAHSAPPPAPVQGGGGGSMLGGLGATIAQGMAFGTGSAVAHRAVDAVMGPRVIQHETVDSSTPSSAPSVASNPGG

Query:  SDACNVQSKSFQDCLNHYGSDISKCQFYLDMLQECRKSSGSVLGA
        SDACNVQSKSFQDCLNHYGSDISKCQFYLDMLQECR+SSGSVLGA
Subjt:  SDACNVQSKSFQDCLNHYGSDISKCQFYLDMLQECRKSSGSVLGA

A0A1S3BAZ1 uncharacterized protein C6C3.02c-like1.2e-6191.03Show/hide
Query:  MPRRSSGGRSASRPAPRAPPRNTPAPAHSAPPPAPVQGGGGGSMLGGLGATIAQGMAFGTGSAVAHRAVDAVMGPRVIQHETVDSSTPSSAPSVASNPGG
        MPRRSSGGRSA RPA RAP RN PAP +SAPPPAPVQGGGGGSMLGGLGATIAQGMAFGTGSAVAHRAVDAVMGPR IQHET+DSS  SSAPSVA+N GG
Subjt:  MPRRSSGGRSASRPAPRAPPRNTPAPAHSAPPPAPVQGGGGGSMLGGLGATIAQGMAFGTGSAVAHRAVDAVMGPRVIQHETVDSSTPSSAPSVASNPGG

Query:  SDACNVQSKSFQDCLNHYGSDISKCQFYLDMLQECRKSSGSVLGA
        SDACNVQSKSFQDCLNHYGSDISKCQFYLDMLQECR+SSGSVLGA
Subjt:  SDACNVQSKSFQDCLNHYGSDISKCQFYLDMLQECRKSSGSVLGA

A0A5A7VFK2 Coiled-coil-helix-coiled-coil-helix domain-containing protein 105.2e-6291.72Show/hide
Query:  MPRRSSGGRSASRPAPRAPPRNTPAPAHSAPPPAPVQGGGGGSMLGGLGATIAQGMAFGTGSAVAHRAVDAVMGPRVIQHETVDSSTPSSAPSVASNPGG
        MPRRSSGGRSA RPA RAP RN PAP +SAPPPAPVQGGGGGSMLGGLGATIAQGMAFGTGSAVAHRAVDAVMGPR IQHET+DSS  SSAPSVASN GG
Subjt:  MPRRSSGGRSASRPAPRAPPRNTPAPAHSAPPPAPVQGGGGGSMLGGLGATIAQGMAFGTGSAVAHRAVDAVMGPRVIQHETVDSSTPSSAPSVASNPGG

Query:  SDACNVQSKSFQDCLNHYGSDISKCQFYLDMLQECRKSSGSVLGA
        SDACNVQSKSFQDCLNHYGSDISKCQFYLDMLQECR+SSGSVLGA
Subjt:  SDACNVQSKSFQDCLNHYGSDISKCQFYLDMLQECRKSSGSVLGA

A0A6J1HDK4 coiled-coil-helix-coiled-coil-helix domain-containing protein 10, mitochondrial6.1e-71100Show/hide
Query:  MPRRSSGGRSASRPAPRAPPRNTPAPAHSAPPPAPVQGGGGGSMLGGLGATIAQGMAFGTGSAVAHRAVDAVMGPRVIQHETVDSSTPSSAPSVASNPGG
        MPRRSSGGRSASRPAPRAPPRNTPAPAHSAPPPAPVQGGGGGSMLGGLGATIAQGMAFGTGSAVAHRAVDAVMGPRVIQHETVDSSTPSSAPSVASNPGG
Subjt:  MPRRSSGGRSASRPAPRAPPRNTPAPAHSAPPPAPVQGGGGGSMLGGLGATIAQGMAFGTGSAVAHRAVDAVMGPRVIQHETVDSSTPSSAPSVASNPGG

Query:  SDACNVQSKSFQDCLNHYGSDISKCQFYLDMLQECRKSSGSVLGA
        SDACNVQSKSFQDCLNHYGSDISKCQFYLDMLQECRKSSGSVLGA
Subjt:  SDACNVQSKSFQDCLNHYGSDISKCQFYLDMLQECRKSSGSVLGA

A0A6J1K966 coiled-coil-helix-coiled-coil-helix domain-containing protein 10, mitochondrial-like2.0e-6998.62Show/hide
Query:  MPRRSSGGRSASRPAPRAPPRNTPAPAHSAPPPAPVQGGGGGSMLGGLGATIAQGMAFGTGSAVAHRAVDAVMGPRVIQHETVDSSTPSSAPSVASNPGG
        MPRRSSGGRSASRPAPRAPPRNTPAPA+SAPPPAPVQGGGGGSMLGGLGATIAQGMAFGTGSAVAHRAVDAVMGPRVIQHETVDSSTPSSAPSVA NPGG
Subjt:  MPRRSSGGRSASRPAPRAPPRNTPAPAHSAPPPAPVQGGGGGSMLGGLGATIAQGMAFGTGSAVAHRAVDAVMGPRVIQHETVDSSTPSSAPSVASNPGG

Query:  SDACNVQSKSFQDCLNHYGSDISKCQFYLDMLQECRKSSGSVLGA
        SDACNVQSKSFQDCLNHYGSDISKCQFYLDMLQECRKSSGSVLGA
Subjt:  SDACNVQSKSFQDCLNHYGSDISKCQFYLDMLQECRKSSGSVLGA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G09570.1 Cox19-like CHCH family protein3.7e-3656.38Show/hide
Query:  MPRRSSGGRSASRP----APRAPPRNTPAPAHSAPPPAPVQGGGGGSMLGGLGATIAQGMAFGTGSAVAHRAVDAVMGPRVIQHETVDSSTPSSAPSVAS
        MPR SSGGRS+ RP    A R+PP   P   + APPPA  Q   GGS LG +GA+I +G+A+GTG+A  HR VD+VMGPR  +HETV S  PS+A ++  
Subjt:  MPRRSSGGRSASRP----APRAPPRNTPAPAHSAPPPAPVQGGGGGSMLGGLGATIAQGMAFGTGSAVAHRAVDAVMGPRVIQHETVDSSTPSSAPSVAS

Query:  NPGGSDACNVQSKSFQDCLNHYGSDISKCQFYLDMLQECRKSSGSVLGA
              AC++ SK+FQDC+NH+GSDISKCQFY+DML EC+K+SGSV+ A
Subjt:  NPGGSDACNVQSKSFQDCLNHYGSDISKCQFYLDMLQECRKSSGSVLGA

AT5G64400.1 CONTAINS InterPro DOMAIN/s: CHCH (InterPro:IPR010625)2.4e-4365.07Show/hide
Query:  MPRRSSGGRSASRPAPRAPPRNTPAPAHSAPPPAPVQ-GGGGGSMLGGLGATIAQGMAFGTGSAVAHRAVDAVMGPRVIQHETVDSSTPSSAPSVASNPG
        M RRSSGGRSA RP P A     P P H APPPAP Q  GGGG M  G+G+TIAQGMAFGTGSAVAHRAVD+VMGPR IQHE V++++ S+AP  A +  
Subjt:  MPRRSSGGRSASRPAPRAPPRNTPAPAHSAPPPAPVQ-GGGGGSMLGGLGATIAQGMAFGTGSAVAHRAVDAVMGPRVIQHETVDSSTPSSAPSVASNPG

Query:  GSDACNVQSKSFQDCLNHYGSDISKCQFYLDMLQECRKSSGSVLGA
         S  C++ +K+FQDC+  YGS+ISKCQFY+DML ECRK+SGSV+GA
Subjt:  GSDACNVQSKSFQDCLNHYGSDISKCQFYLDMLQECRKSSGSVLGA

AT5G64400.2 BEST Arabidopsis thaliana protein match is: Cox19-like CHCH family protein (TAIR:AT5G09570.1)7.0e-2762.28Show/hide
Query:  MPRRSSGGRSASRPAPRAPPRNTPAPAHSAPPPAPVQ-GGGGGSMLGGLGATIAQGMAFGTGSAVAHRAVDAVMGPRVIQHETVDSSTPSSAPSVASNPG
        M RRSSGGRSA RP P A     P P H APPPAP Q  GGGG M  G+G+TIAQGMAFGTGSAVAHRAVD+VMGPR IQHE V++++ S+AP  A +  
Subjt:  MPRRSSGGRSASRPAPRAPPRNTPAPAHSAPPPAPVQ-GGGGGSMLGGLGATIAQGMAFGTGSAVAHRAVDAVMGPRVIQHETVDSSTPSSAPSVASNPG

Query:  GSDACNVQSKSFQD
         S  C++ +K+FQD
Subjt:  GSDACNVQSKSFQD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCTCGTCGGAGCTCTGGAGGACGATCTGCTTCCCGTCCCGCCCCTCGCGCTCCACCTCGCAATACTCCGGCGCCAGCTCATTCTGCTCCTCCACCTGCACCTGTTCA
AGGTGGTGGAGGTGGGTCTATGCTGGGAGGACTTGGTGCCACTATTGCTCAAGGTATGGCCTTCGGTACTGGAAGTGCGGTGGCTCACAGGGCTGTTGATGCCGTTATGG
GTCCTCGTGTCATCCAGCACGAGACTGTTGATTCATCAACTCCTTCGTCAGCACCTTCAGTAGCGAGCAATCCTGGAGGTTCTGATGCTTGTAATGTTCAGTCAAAGTCC
TTTCAAGATTGCCTGAACCACTATGGAAGTGACATTAGCAAGTGCCAATTCTACTTAGATATGTTGCAGGAATGCCGCAAGAGCTCAGGTTCTGTTTTGGGTGCTTAA
mRNA sequenceShow/hide mRNA sequence
AATTAAGTAGGTTCGTATATAATGAGGCAAGCTTGATAAATCCGGTACAAACCCTAAAGAGGGCAGCCAACGCCATTTCGCTTACTTTTTCTCCTTAGCAGTCGTCGCTT
CTCATCGTCAGCAATCATGCCTCGTCGGAGCTCTGGAGGACGATCTGCTTCCCGTCCCGCCCCTCGCGCTCCACCTCGCAATACTCCGGCGCCAGCTCATTCTGCTCCTC
CACCTGCACCTGTTCAAGGTGGTGGAGGTGGGTCTATGCTGGGAGGACTTGGTGCCACTATTGCTCAAGGTATGGCCTTCGGTACTGGAAGTGCGGTGGCTCACAGGGCT
GTTGATGCCGTTATGGGTCCTCGTGTCATCCAGCACGAGACTGTTGATTCATCAACTCCTTCGTCAGCACCTTCAGTAGCGAGCAATCCTGGAGGTTCTGATGCTTGTAA
TGTTCAGTCAAAGTCCTTTCAAGATTGCCTGAACCACTATGGAAGTGACATTAGCAAGTGCCAATTCTACTTAGATATGTTGCAGGAATGCCGCAAGAGCTCAGGTTCTG
TTTTGGGTGCTTAAACAATTGATTCTTAGAACAGTTATCATGTATTCTCACTCGGATTGACCGCAGTGAGCGGTGTCAAGATTATCGTGCGTTTTGACTGTGTTTTCATT
TTTACAAGTACTGCTTTAACTGTAATAAAGGGTGGCAATGATTTAAAAAACACTTCATCGTTTGGACCTTATTGTTTGGCTTTGAGCTTTGGGTATTTTCTTGTGAAATT
AAAACTGCTGTTTTGGATTTATAATATCTACGTGACGAATATTGCAGATTACTCGGTTAAAACAACTATAATCGAGATTTGTAAATTAATTCGAGTTTGTATTAGCCAAA
TGACTTTTTTTTGTTCTTTTTGTGAAGTTTATGACTTTGATTTGTTGATGTTCTAAACTATATTGACTTAGCCATTTCTTGAAGATCGATCGGTTGATTATTAGCTAGCT
CGAGTGGCCCTAGCCATTTCTTTCTGTTAATATGAATCGATATGCTACCATCGATTTTTTATAATGAAATTACGAGATCGAAGTTTGATTTTGCAGTTAGTGTCGGAGTC
CTCTCCTTTTTGTTGGGACTTAATTTTTTTAATATGCCCAACGAAAACGTGGTTTTAGTAAAGAAAAGATCAATGCCAACCCAGAATTAGTGGGCATGTGATGTGTTGCA
TGCAAGTTGTGAGAAGGGGCTTCTCATTGACTTTGCTCAGCTTAGAGAACAAATCTTCCCCACCCATTGCT
Protein sequenceShow/hide protein sequence
MPRRSSGGRSASRPAPRAPPRNTPAPAHSAPPPAPVQGGGGGSMLGGLGATIAQGMAFGTGSAVAHRAVDAVMGPRVIQHETVDSSTPSSAPSVASNPGGSDACNVQSKS
FQDCLNHYGSDISKCQFYLDMLQECRKSSGSVLGA