CuGenDBv2

Gene ID	Carg08230
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Ribosomal RNA small subunit methyltransferase A
Genome location	Carg_Chr05:2819604..2821582
RNA-Seq Expression	Carg08230
Synteny	Carg08230
Gene Ontology terms	GO:0032259 - methylation (biological process) GO:0008168 - methyltransferase activity (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6598728.1 hypothetical protein SDJN03_08506, partial [Cucurbita argyrosperma subsp. sororia]

2.6e-91

99.42

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Query:  MSVAFPQLSWWLRSGKHKEPQSSNGGSALNASLDTANRETDTLKFSLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCMSGSESDDSDWSI
        MSVAFPQLSWWLRSGKHKEPQSSNGGSALNASLDTANRETDTLKFSLVNGA+ISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCMSGSESDDSDWSI
Subjt:  MSVAFPQLSWWLRSGKHKEPQSSNGGSALNASLDTANRETDTLKFSLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCMSGSESDDSDWSI

Query:  GWSEPHGPGFQSDDDSDNSFAVLVPCYARIYNDFVDETKISVLSAVGNISDSFSTESKKYMEQWLSALQNC
        GWSEPHGPGFQSDDDSDNSFAVLVPCYARIYNDFVDETKISVLSAVGNISDSFSTESKKYMEQWLSALQNC
Subjt:  GWSEPHGPGFQSDDDSDNSFAVLVPCYARIYNDFVDETKISVLSAVGNISDSFSTESKKYMEQWLSALQNC

XP_022961798.1 uncharacterized protein LOC111462457 isoform X1 [Cucurbita moschata]

1.7e-90

99.42

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Query:  MSVAFPQLSWWLRSGKHKEPQSSNGGSALNASLDTANRETDTLKFSLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCMSGSESDDSDWSI
        MSVAFPQLSWWLRSGKHKEPQSSNGGSALNASLDTANRETDTLKFSLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCMSGSESDDSDWSI
Subjt:  MSVAFPQLSWWLRSGKHKEPQSSNGGSALNASLDTANRETDTLKFSLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCMSGSESDDSDWSI

Query:  GWSEPHGPGFQSDDDSDNSFAVLVPCYARIYNDFVDETKISVLSAVGNISDSFST-ESKKYMEQWLSALQNC
        GWSEPHGPGFQSDDDSDNSFAVLVPCYARIYNDFVDETKISVLSAVGNISDSFST ESKKYMEQWLSALQNC
Subjt:  GWSEPHGPGFQSDDDSDNSFAVLVPCYARIYNDFVDETKISVLSAVGNISDSFST-ESKKYMEQWLSALQNC

XP_022961803.1 uncharacterized protein LOC111462457 isoform X2 [Cucurbita moschata]

6.9e-92

100

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Query:  MSVAFPQLSWWLRSGKHKEPQSSNGGSALNASLDTANRETDTLKFSLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCMSGSESDDSDWSI
        MSVAFPQLSWWLRSGKHKEPQSSNGGSALNASLDTANRETDTLKFSLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCMSGSESDDSDWSI
Subjt:  MSVAFPQLSWWLRSGKHKEPQSSNGGSALNASLDTANRETDTLKFSLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCMSGSESDDSDWSI

Query:  GWSEPHGPGFQSDDDSDNSFAVLVPCYARIYNDFVDETKISVLSAVGNISDSFSTESKKYMEQWLSALQNC
        GWSEPHGPGFQSDDDSDNSFAVLVPCYARIYNDFVDETKISVLSAVGNISDSFSTESKKYMEQWLSALQNC
Subjt:  GWSEPHGPGFQSDDDSDNSFAVLVPCYARIYNDFVDETKISVLSAVGNISDSFSTESKKYMEQWLSALQNC

XP_022997281.1 uncharacterized protein LOC111492231 isoform X2 [Cucurbita maxima]

1.5e-91

99.42

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Query:  MSVAFPQLSWWLRSGKHKEPQSSNGGSALNASLDTANRETDTLKFSLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCMSGSESDDSDWSI
        MSVAFPQLSWWLRSGKHKEPQSSNGGSALNASLDTANRETDTLKFSLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCMSGSESDDSDWSI
Subjt:  MSVAFPQLSWWLRSGKHKEPQSSNGGSALNASLDTANRETDTLKFSLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCMSGSESDDSDWSI

Query:  GWSEPHGPGFQSDDDSDNSFAVLVPCYARIYNDFVDETKISVLSAVGNISDSFSTESKKYMEQWLSALQNC
        GWSEPHGPGFQSDDDSDNSFAVLVPCYARIYNDFVDETKISVLSAVGNISDSFSTESKKYMEQWLS+LQNC
Subjt:  GWSEPHGPGFQSDDDSDNSFAVLVPCYARIYNDFVDETKISVLSAVGNISDSFSTESKKYMEQWLSALQNC

XP_023545352.1 uncharacterized protein LOC111804795 isoform X2 [Cucurbita pepo subsp. pepo]

9.9e-91

98.25

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Query:  MSVAFPQLSWWLRSGKHKEPQSSNGGSALNASLDTANRETDTLKFSLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCMSGSESDDSDWSI
        MSVAFPQLSWWLRSGKHKEPQSSNGGS+LNASLDTANRETDTLKFSLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGC+SGSESDDSDWSI
Subjt:  MSVAFPQLSWWLRSGKHKEPQSSNGGSALNASLDTANRETDTLKFSLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCMSGSESDDSDWSI

Query:  GWSEPHGPGFQSDDDSDNSFAVLVPCYARIYNDFVDETKISVLSAVGNISDSFSTESKKYMEQWLSALQNC
        GWSEPHGPGFQSDDDSDNSFAVLVPCYARIYNDFVDETKISVLSAVGNISDSFSTESKKYMEQWLS+LQNC
Subjt:  GWSEPHGPGFQSDDDSDNSFAVLVPCYARIYNDFVDETKISVLSAVGNISDSFSTESKKYMEQWLSALQNC

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BB05 uncharacterized protein LOC103488121

2.1e-86

92.4

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Query:  MSVAFPQLSWWLRSGKHKEPQSSNGGSALNASLDTANRETDTLKFSLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCMSGSESDDSDWSI
        MSVAFPQLSWWL SGKHKEP+SSNGGSALNASLDTANRETDTLKF LVNGANISSSSRRVKRKWHSREERK+DREYDIVLVPSDGGC+SGSESDDSDWSI
Subjt:  MSVAFPQLSWWLRSGKHKEPQSSNGGSALNASLDTANRETDTLKFSLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCMSGSESDDSDWSI

Query:  GWSEPHGPGFQSDDDSDNSFAVLVPCYARIYNDFVDETKISVLSAVGNISDSFSTESKKYMEQWLSALQNC
        GWSEPHGPGFQSDD+SDNSFAVLVPCY RIYNDFVDETK S+LSA+GNI+DSFS ESKKYMEQWLS+LQNC
Subjt:  GWSEPHGPGFQSDDDSDNSFAVLVPCYARIYNDFVDETKISVLSAVGNISDSFSTESKKYMEQWLSALQNC

A0A6J1HCV2 uncharacterized protein LOC111462457 isoform X1

8.2e-91

99.42

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Query:  MSVAFPQLSWWLRSGKHKEPQSSNGGSALNASLDTANRETDTLKFSLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCMSGSESDDSDWSI
        MSVAFPQLSWWLRSGKHKEPQSSNGGSALNASLDTANRETDTLKFSLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCMSGSESDDSDWSI
Subjt:  MSVAFPQLSWWLRSGKHKEPQSSNGGSALNASLDTANRETDTLKFSLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCMSGSESDDSDWSI

Query:  GWSEPHGPGFQSDDDSDNSFAVLVPCYARIYNDFVDETKISVLSAVGNISDSFST-ESKKYMEQWLSALQNC
        GWSEPHGPGFQSDDDSDNSFAVLVPCYARIYNDFVDETKISVLSAVGNISDSFST ESKKYMEQWLSALQNC
Subjt:  GWSEPHGPGFQSDDDSDNSFAVLVPCYARIYNDFVDETKISVLSAVGNISDSFST-ESKKYMEQWLSALQNC

A0A6J1HCV7 uncharacterized protein LOC111462457 isoform X2

3.3e-92

100

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Query:  MSVAFPQLSWWLRSGKHKEPQSSNGGSALNASLDTANRETDTLKFSLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCMSGSESDDSDWSI
        MSVAFPQLSWWLRSGKHKEPQSSNGGSALNASLDTANRETDTLKFSLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCMSGSESDDSDWSI
Subjt:  MSVAFPQLSWWLRSGKHKEPQSSNGGSALNASLDTANRETDTLKFSLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCMSGSESDDSDWSI

Query:  GWSEPHGPGFQSDDDSDNSFAVLVPCYARIYNDFVDETKISVLSAVGNISDSFSTESKKYMEQWLSALQNC
        GWSEPHGPGFQSDDDSDNSFAVLVPCYARIYNDFVDETKISVLSAVGNISDSFSTESKKYMEQWLSALQNC
Subjt:  GWSEPHGPGFQSDDDSDNSFAVLVPCYARIYNDFVDETKISVLSAVGNISDSFSTESKKYMEQWLSALQNC

A0A6J1K730 uncharacterized protein LOC111492231 isoform X2

7.4e-92

99.42

Show/hide

Query:  MSVAFPQLSWWLRSGKHKEPQSSNGGSALNASLDTANRETDTLKFSLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCMSGSESDDSDWSI
        MSVAFPQLSWWLRSGKHKEPQSSNGGSALNASLDTANRETDTLKFSLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCMSGSESDDSDWSI
Subjt:  MSVAFPQLSWWLRSGKHKEPQSSNGGSALNASLDTANRETDTLKFSLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCMSGSESDDSDWSI

Query:  GWSEPHGPGFQSDDDSDNSFAVLVPCYARIYNDFVDETKISVLSAVGNISDSFSTESKKYMEQWLSALQNC
        GWSEPHGPGFQSDDDSDNSFAVLVPCYARIYNDFVDETKISVLSAVGNISDSFSTESKKYMEQWLS+LQNC
Subjt:  GWSEPHGPGFQSDDDSDNSFAVLVPCYARIYNDFVDETKISVLSAVGNISDSFSTESKKYMEQWLSALQNC

A0A6J1KDE3 uncharacterized protein LOC111492231 isoform X1

1.8e-90

98.84

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Query:  MSVAFPQLSWWLRSGKHKEPQSSNGGSALNASLDTANRETDTLKFSLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCMSGSESDDSDWSI
        MSVAFPQLSWWLRSGKHKEPQSSNGGSALNASLDTANRETDTLKFSLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCMSGSESDDSDWSI
Subjt:  MSVAFPQLSWWLRSGKHKEPQSSNGGSALNASLDTANRETDTLKFSLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCMSGSESDDSDWSI

Query:  GWSEPHGPGFQSDDDSDNSFAVLVPCYARIYNDFVDETKISVLSAVGNISDSFST-ESKKYMEQWLSALQNC
        GWSEPHGPGFQSDDDSDNSFAVLVPCYARIYNDFVDETKISVLSAVGNISDSFST ESKKYMEQWLS+LQNC
Subjt:  GWSEPHGPGFQSDDDSDNSFAVLVPCYARIYNDFVDETKISVLSAVGNISDSFST-ESKKYMEQWLSALQNC

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT4G38060.1 unknown protein

2.7e-09

48.53

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Query:  SGSES------DDSDWSIGWSEPHGPGFQSDDD-SDNSFAVLVPCYARIYNDFVDETKISVLSAVGNI
        SGSES      D  +WS+GW+EPHGP FQSDD+ +D  F VLVPCY  +     +     +LSAV N+
Subjt:  SGSES------DDSDWSIGWSEPHGPGFQSDDD-SDNSFAVLVPCYARIYNDFVDETKISVLSAVGNI

AT4G38060.2 unknown protein

1.5e-15

48.86

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Query:  SGSES------DDSDWSIGWSEPHGPGFQSDDD-SDNSFAVLVPCYARIYNDFVDETKISVLSAVGNISDSFSTESKKYMEQWLSALQ
        SGSES      D  +WS+GW+EPHGP FQSDD+ +D  F VLVPCY  +     +     +LSAV N+ +    + K YMEQWLS+LQ
Subjt:  SGSES------DDSDWSIGWSEPHGPGFQSDDD-SDNSFAVLVPCYARIYNDFVDETKISVLSAVGNISDSFSTESKKYMEQWLSALQ

AT5G65480.1 unknown protein

7.2e-15

34.1

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Query:  MSVAFPQLSWWLRSG-----KHKEPQSSNGGSALNASLDTANRETDTLKFSLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCMSGSESDD
        M+V+FP+L  WL  G     + K+     G S+L+ SL    ++T T K       + SSS ++ KR W  R       E D +      G +   E DD
Subjt:  MSVAFPQLSWWLRSG-----KHKEPQSSNGGSALNASLDTANRETDTLKFSLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCMSGSESDD

Query:  SDWSIGWSEPHGPGFQSDDDSDNSFAVLVPCYARIYNDFVDETKISVLSAVGNISDSFSTESKKYMEQWLSAL
         +WSIGW EPHGPGF+++DD    F VLVP Y ++ +   ++        + N   S +    K MEQWLS++
Subjt:  SDWSIGWSEPHGPGFQSDDDSDNSFAVLVPCYARIYNDFVDETKISVLSAVGNISDSFSTESKKYMEQWLSAL

Sequences

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CDS sequence

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mRNA sequence

Show/hide mRNA sequence

ATGTCTGTGGCATTTCCCCAGCTCTCGTGGTGGTTGCGTAGTGGGAAGCATAAAGAACCTCAAAGCTCTAATGGGGGTTCTGCTTTAAATGCTTCACTAGATACAGCCAA
CCGGGAAACAGATACTCTAAAATTTTCTTTAGTTAATGGGGCCAACATATCATCCTCGTCTAGAAGGGTGAAACGGAAATGGCATAGTCGGGAAGAGAGGAAAATTGATA
GGGAATATGACATTGTTCTTGTTCCATCTGATGGAGGGTGCATGTCAGGGTCTGAGTCTGATGACTCAGATTGGTCAATTGGATGGTCGGAACCCCATGGACCTGGATTC
CAGAGTGATGATGACTCGGATAACAGTTTTGCAGTGCTGGTTCCATGTTATGCACGCATTTACAATGATTTTGTGGATGAAACTAAGATCAGTGTCCTAAGTGCTGTTGG
GAACATCAGCGACAGCTTTTCTACTGAGAGCAAGAAATACATGGAACAGTGGCTGTCCGCTCTTCAGAACTGCTGATACACAGGATTTATAATGGTTGCACGCGGACGCT
AATGCCTTGTTTCCAAGAAGAAAACAATTTGTGATCTTAAGCCATTTAAACATTAAAAAAAAAAATGAAAAAATAAAAAGAAAAAGATGATACAGGACTATCTATTCTGG
CTTCGTTTGATTTACTGCTGGGAAGCAAATTGGATGAACAGATTGGATGCAACCAGTGGGTGAAGGTCTCATCTTTTCAAAAAAAATTTATGCAACCAGTGGGTGAAGGT
CTCATCTTTTCAAAAAAAAATTGACCATGTTCTTAAGAAGAGAGAGGCCTAAATTATGACCTCATCTGTGTTGAAGCCTGTTAAAATGGGATGTAAATACTTTAGAGACT
CCTATATGAATATGGAAGGGAGACAGGAGGAAGAAGGCTGAGCCAACCAGCTGGGGTTTGATGAAAAAGAATATTAAGGAGGTGCGAGTGCAAATGTCTTGTTATTCTTT
GAAGTTCAGTTCAGTTCATGTATAAAGTGGGAAAGGTGTTTAGTTTAGTTCAGTTCAGTTCAGTTCAGTTCATCTGAAAGTTGCTGTAAAAGTGACTCATCTATGCATGC
ATCA

Protein sequence

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MSVAFPQLSWWLRSGKHKEPQSSNGGSALNASLDTANRETDTLKFSLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCMSGSESDDSDWSIGWSEPHGPGF
QSDDDSDNSFAVLVPCYARIYNDFVDETKISVLSAVGNISDSFSTESKKYMEQWLSALQNC

Carg08230 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome