| GenBank top hits | e value | %identity | Alignment |
|---|
| KAG7029701.1 RNA polymerase sigma factor sigC [Cucurbita argyrosperma subsp. argyrosperma] | 4.3e-310 | 100 | Show/hide |
Query: MGTSFRPNLKWAFQIQTHSRRASPSKLSPYASKGREASFNSGRLSFFSSTCEEGEAISREALKTYTCLSEAPQTLADGLLDLEEKEIEINSGAKSLGHLR
MGTSFRPNLKWAFQIQTHSRRASPSKLSPYASKGREASFNSGRLSFFSSTCEEGEAISREALKTYTCLSEAPQTLADGLLDLEEKEIEINSGAKSLGHLR
Subjt: MGTSFRPNLKWAFQIQTHSRRASPSKLSPYASKGREASFNSGRLSFFSSTCEEGEAISREALKTYTCLSEAPQTLADGLLDLEEKEIEINSGAKSLGHLR
Query: YGSKNSGPSKVEDNFCSCTSLPTGRASPFGMLMENLDVLEETFTESGMLSLERDILLQLTKLGALEFFNACLSRTLKASSSFHDLSDLPIEVGGDHNVNQ
YGSKNSGPSKVEDNFCSCTSLPTGRASPFGMLMENLDVLEETFTESGMLSLERDILLQLTKLGALEFFNACLSRTLKASSSFHDLSDLPIEVGGDHNVNQ
Subjt: YGSKNSGPSKVEDNFCSCTSLPTGRASPFGMLMENLDVLEETFTESGMLSLERDILLQLTKLGALEFFNACLSRTLKASSSFHDLSDLPIEVGGDHNVNQ
Query: KTDDQNDNIVVYSGKRAGRRSVKRRAMDNADKVASRPLATRAAKEKFRSLRKKASNSKKRRSIVARNEAEMSTGVKVVANLERIRETLEKESGRTASMSC
KTDDQNDNIVVYSGKRAGRRSVKRRAMDNADKVASRPLATRAAKEKFRSLRKKASNSKKRRSIVARNEAEMSTGVKVVANLERIRETLEKESGRTASMSC
Subjt: KTDDQNDNIVVYSGKRAGRRSVKRRAMDNADKVASRPLATRAAKEKFRSLRKKASNSKKRRSIVARNEAEMSTGVKVVANLERIRETLEKESGRTASMSC
Query: WADAASIDIKDLQKQLQFGWFCQDELLRSTNSLVIFLAKKYRCSGLPMEDLVQAGAIGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARSSRGIQIP
WADAASIDIKDLQKQLQFGWFCQDELLRSTNSLVIFLAKKYRCSGLPMEDLVQAGAIGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARSSRGIQIP
Subjt: WADAASIDIKDLQKQLQFGWFCQDELLRSTNSLVIFLAKKYRCSGLPMEDLVQAGAIGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARSSRGIQIP
Query: WSLTKAINQIQKARKALNNSGRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKIGDGLNMKYMELTADTSIESPEDTVKRRLMKKDIFNLLEVLESR
WSLTKAINQIQKARKALNNSGRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKIGDGLNMKYMELTADTSIESPEDTVKRRLMKKDIFNLLEVLESR
Subjt: WSLTKAINQIQKARKALNNSGRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKIGDGLNMKYMELTADTSIESPEDTVKRRLMKKDIFNLLEVLESR
Query: ERQVLVLRYGLMDSQPKSLEEIGKLLCVSKEWVRKIERKATTKLKNEETVRNLSHYLD
ERQVLVLRYGLMDSQPKSLEEIGKLLCVSKEWVRKIERKATTKLKNEETVRNLSHYLD
Subjt: ERQVLVLRYGLMDSQPKSLEEIGKLLCVSKEWVRKIERKATTKLKNEETVRNLSHYLD
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| XP_022962483.1 RNA polymerase sigma factor sigC-like [Cucurbita moschata] | 1.6e-307 | 99.1 | Show/hide |
Query: MGTSFRPNLKWAFQIQTHSRRASPSKLSPYASKGREASFNSGRLSFFSSTCEEGEAISREALKTYTCLSEAPQTLADGLLDLEEKEIEINSGAKSLGHLR
MGTSFRPNLKWAFQIQTHSRRASPSKLSPYASKGREASFNSGRLSFFSSTCEEGEAISREALKTYTCLSEAPQTLADGLLDLEEKEIEINSGAKSLGHLR
Subjt: MGTSFRPNLKWAFQIQTHSRRASPSKLSPYASKGREASFNSGRLSFFSSTCEEGEAISREALKTYTCLSEAPQTLADGLLDLEEKEIEINSGAKSLGHLR
Query: YGSKNSGPSKVEDNFCSCTSLPTGRASPFGMLMENLDVLEETFTESGMLSLERDILLQLTKLGALEFFNACLSRTLKASSSFHDLSDLPIEVGGDHNVNQ
YGSKNSGPSKVEDNFCSCTSLPTGRASPFGMLMENLDVLEETFTESGMLSLERDI+LQLTKLGALEFFNACLSRTLKASSSF DLSDLPIEVGGDHNVNQ
Subjt: YGSKNSGPSKVEDNFCSCTSLPTGRASPFGMLMENLDVLEETFTESGMLSLERDILLQLTKLGALEFFNACLSRTLKASSSFHDLSDLPIEVGGDHNVNQ
Query: KTDDQNDNIVVYSGKRAGRRSVKRRAMDNADKVASRPLATRAAKEKFRSLRKKASNSKKRRSIVARNEAEMSTGVKVVANLERIRETLEKESGRTASMSC
KTDDQNDNI+VYSGKRAGRRSVKRRAMDNADKVASRPLATRAAKEKFRS RKKASNSKKRRSIVARNEAEMSTGVKVVANLERIRET EKESGRTASMSC
Subjt: KTDDQNDNIVVYSGKRAGRRSVKRRAMDNADKVASRPLATRAAKEKFRSLRKKASNSKKRRSIVARNEAEMSTGVKVVANLERIRETLEKESGRTASMSC
Query: WADAASIDIKDLQKQLQFGWFCQDELLRSTNSLVIFLAKKYRCSGLPMEDLVQAGAIGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARSSRGIQIP
WADAASIDIKDLQKQLQFGWFCQDELLRSTNSLVIFLAKKYRCSGLPMEDLVQAGAIGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARSSRGIQIP
Subjt: WADAASIDIKDLQKQLQFGWFCQDELLRSTNSLVIFLAKKYRCSGLPMEDLVQAGAIGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARSSRGIQIP
Query: WSLTKAINQIQKARKALNNSGRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKIGDGLNMKYMELTADTSIESPEDTVKRRLMKKDIFNLLEVLESR
WSLTKAINQIQKARKALNNSGRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKIGDGLNMKYMELTADTSIESPEDTVKRRLMKKDIFNLLEVLESR
Subjt: WSLTKAINQIQKARKALNNSGRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKIGDGLNMKYMELTADTSIESPEDTVKRRLMKKDIFNLLEVLESR
Query: ERQVLVLRYGLMDSQPKSLEEIGKLLCVSKEWVRKIERKATTKLKNEETVRNLSHYLD
ERQVLVLRYGLMDSQPKSLEEIGKLLCVSKEWVRKIERKATTKLKNEETVRNLSHYLD
Subjt: ERQVLVLRYGLMDSQPKSLEEIGKLLCVSKEWVRKIERKATTKLKNEETVRNLSHYLD
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| XP_022996943.1 RNA polymerase sigma factor sigC-like isoform X1 [Cucurbita maxima] | 2.4e-303 | 97.85 | Show/hide |
Query: MGTSFRPNLKWAFQIQTHSRRASPSKLSPYASKGREASFNSGRLSFFSSTCEEGEAISREALKTYTCLSEAPQTLADGLLDLEEKEIEINSGAKSLGHLR
MGTSFRPNLKWAFQIQTHSRRASPSKLSPYASKGREASFNSGRLSFFSSTCEEGEAISREALKTYTCLSEAPQTLADGLLDLEEKE+EINSGAKSL HL
Subjt: MGTSFRPNLKWAFQIQTHSRRASPSKLSPYASKGREASFNSGRLSFFSSTCEEGEAISREALKTYTCLSEAPQTLADGLLDLEEKEIEINSGAKSLGHLR
Query: YGSKNSGPSKVEDNFCSCTSLPTGRASPFGMLMENLDVLEETFTESGMLSLERDILLQLTKLGALEFFNACLSRTLKASSSFHDLSDLPIEVGGDHNVNQ
YGSKNSGPSKVEDNFCSCTSLPTGRASPF MLMENLDVLEETFTESGMLSLERDI+LQLTKLGALEFFNACLSRTLKASSSF DLSDLPIEVGGDHNVNQ
Subjt: YGSKNSGPSKVEDNFCSCTSLPTGRASPFGMLMENLDVLEETFTESGMLSLERDILLQLTKLGALEFFNACLSRTLKASSSFHDLSDLPIEVGGDHNVNQ
Query: KTDDQNDNIVVYSGKRAGRRSVKRRAMDNADKVASRPLATRAAKEKFRSLRKKASNSKKRRSIVARNEAEMSTGVKVVANLERIRETLEKESGRTASMSC
KTDDQN NI+VYSGKRAGRRSVKRRAMDNADKVASRPLATRAAKEKFRS RKKASNSKKRRSIVARNEAEMSTGVKVVANLERIRETLEKESGRTASMSC
Subjt: KTDDQNDNIVVYSGKRAGRRSVKRRAMDNADKVASRPLATRAAKEKFRSLRKKASNSKKRRSIVARNEAEMSTGVKVVANLERIRETLEKESGRTASMSC
Query: WADAASIDIKDLQKQLQFGWFCQDELLRSTNSLVIFLAKKYRCSGLPMEDLVQAGAIGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARSSRGIQIP
WADA+SIDIKDLQKQLQFGWFCQDELLRSTNSLVIFLAKKYRCSGLPMEDLVQAGAIGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARSSRGIQIP
Subjt: WADAASIDIKDLQKQLQFGWFCQDELLRSTNSLVIFLAKKYRCSGLPMEDLVQAGAIGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARSSRGIQIP
Query: WSLTKAINQIQKARKALNNSGRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKIGDGLNMKYMELTADTSIESPEDTVKRRLMKKDIFNLLEVLESR
WSLTKAINQIQKARKALNNSGRRYSDDD+AKATGLPLAKVRVASNCLKVVGSVDQKIGDGLNMKYMELTADTSIESPEDTVKRRLMKKDIFNLLEVLESR
Subjt: WSLTKAINQIQKARKALNNSGRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKIGDGLNMKYMELTADTSIESPEDTVKRRLMKKDIFNLLEVLESR
Query: ERQVLVLRYGLMDSQPKSLEEIGKLLCVSKEWVRKIERKATTKLKNEETVRNLSHYLD
ERQVLVLRYGLMDSQPKSLEEIGKLL VSKEWVRKIERKATTKLKNEETVRNLSHYLD
Subjt: ERQVLVLRYGLMDSQPKSLEEIGKLLCVSKEWVRKIERKATTKLKNEETVRNLSHYLD
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| XP_022996944.1 RNA polymerase sigma factor sigC-like isoform X2 [Cucurbita maxima] | 8.6e-301 | 97.67 | Show/hide |
Query: MGTSFRPNLKWAFQIQTHSRRASPSKLSPYASKGREASFNSGRLSFFSSTCEEGEAISREALKTYTCLSEAPQTLADGLLDLEEKEIEINSGAKSLGHLR
MGTSFRPNLKWAFQIQTHSRRASPSKLSPYASKGREASFNSGRLSFFSSTCEEGEAISREALKTYTCLSEAPQTLADGLLDLEEK EINSGAKSL HL
Subjt: MGTSFRPNLKWAFQIQTHSRRASPSKLSPYASKGREASFNSGRLSFFSSTCEEGEAISREALKTYTCLSEAPQTLADGLLDLEEKEIEINSGAKSLGHLR
Query: YGSKNSGPSKVEDNFCSCTSLPTGRASPFGMLMENLDVLEETFTESGMLSLERDILLQLTKLGALEFFNACLSRTLKASSSFHDLSDLPIEVGGDHNVNQ
YGSKNSGPSKVEDNFCSCTSLPTGRASPF MLMENLDVLEETFTESGMLSLERDI+LQLTKLGALEFFNACLSRTLKASSSF DLSDLPIEVGGDHNVNQ
Subjt: YGSKNSGPSKVEDNFCSCTSLPTGRASPFGMLMENLDVLEETFTESGMLSLERDILLQLTKLGALEFFNACLSRTLKASSSFHDLSDLPIEVGGDHNVNQ
Query: KTDDQNDNIVVYSGKRAGRRSVKRRAMDNADKVASRPLATRAAKEKFRSLRKKASNSKKRRSIVARNEAEMSTGVKVVANLERIRETLEKESGRTASMSC
KTDDQN NI+VYSGKRAGRRSVKRRAMDNADKVASRPLATRAAKEKFRS RKKASNSKKRRSIVARNEAEMSTGVKVVANLERIRETLEKESGRTASMSC
Subjt: KTDDQNDNIVVYSGKRAGRRSVKRRAMDNADKVASRPLATRAAKEKFRSLRKKASNSKKRRSIVARNEAEMSTGVKVVANLERIRETLEKESGRTASMSC
Query: WADAASIDIKDLQKQLQFGWFCQDELLRSTNSLVIFLAKKYRCSGLPMEDLVQAGAIGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARSSRGIQIP
WADA+SIDIKDLQKQLQFGWFCQDELLRSTNSLVIFLAKKYRCSGLPMEDLVQAGAIGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARSSRGIQIP
Subjt: WADAASIDIKDLQKQLQFGWFCQDELLRSTNSLVIFLAKKYRCSGLPMEDLVQAGAIGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARSSRGIQIP
Query: WSLTKAINQIQKARKALNNSGRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKIGDGLNMKYMELTADTSIESPEDTVKRRLMKKDIFNLLEVLESR
WSLTKAINQIQKARKALNNSGRRYSDDD+AKATGLPLAKVRVASNCLKVVGSVDQKIGDGLNMKYMELTADTSIESPEDTVKRRLMKKDIFNLLEVLESR
Subjt: WSLTKAINQIQKARKALNNSGRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKIGDGLNMKYMELTADTSIESPEDTVKRRLMKKDIFNLLEVLESR
Query: ERQVLVLRYGLMDSQPKSLEEIGKLLCVSKEWVRKIERKATTKLKNEETVRNLSHYLD
ERQVLVLRYGLMDSQPKSLEEIGKLL VSKEWVRKIERKATTKLKNEETVRNLSHYLD
Subjt: ERQVLVLRYGLMDSQPKSLEEIGKLLCVSKEWVRKIERKATTKLKNEETVRNLSHYLD
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| XP_023546255.1 RNA polymerase sigma factor sigC-like [Cucurbita pepo subsp. pepo] | 1.5e-305 | 98.75 | Show/hide |
Query: MGTSFRPNLKWAFQIQTHSRRASPSKLSPYASKGREASFNSGRLSFFSSTCEEGEAISREALKTYTCLSEAPQTLADGLLDLEEKEIEINSGAKSLGHLR
MGTSFRPNLKWAFQIQTHSRRASPSKLSPYASKGREASFNSGRLSFFSSTCEEGEAISREALKTYTCLSEAPQTLADGLLDLEEKEIEINSGAKSLGHLR
Subjt: MGTSFRPNLKWAFQIQTHSRRASPSKLSPYASKGREASFNSGRLSFFSSTCEEGEAISREALKTYTCLSEAPQTLADGLLDLEEKEIEINSGAKSLGHLR
Query: YGSKNSGPSKVEDNFCSCTSLPTGRASPFGMLMENLDVLEETFTESGMLSLERDILLQLTKLGALEFFNACLSRTLKASSSFHDLSDLPIEVGGDHNVNQ
YGSKNSGPSKVEDNFCSCTSLPTGRASPFGMLMENLDVLEETFTESGMLSLERDI+LQLTKLGALEFFNACLSRTLKASSSF DLSDLPIEVGGDHNVNQ
Subjt: YGSKNSGPSKVEDNFCSCTSLPTGRASPFGMLMENLDVLEETFTESGMLSLERDILLQLTKLGALEFFNACLSRTLKASSSFHDLSDLPIEVGGDHNVNQ
Query: KTDDQNDNIVVYSGKRAGRRSVKRRAMDNADKVASRPLATRAAKEKFRSLRKKASNSKKRRSIVARNEAEMSTGVKVVANLERIRETLEKESGRTASMSC
KTDDQNDNI+VYSGKRAGRRSVKRRAMDNADKVASRPLATRAAKEKFRS RKKASNSKKRRS VARNEAEMSTGVKVVANLERIRETLEKESGRTASMSC
Subjt: KTDDQNDNIVVYSGKRAGRRSVKRRAMDNADKVASRPLATRAAKEKFRSLRKKASNSKKRRSIVARNEAEMSTGVKVVANLERIRETLEKESGRTASMSC
Query: WADAASIDIKDLQKQLQFGWFCQDELLRSTNSLVIFLAKKYRCSGLPMEDLVQAGAIGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARSSRGIQIP
WADAASIDIKDLQKQLQFGWFCQDELLRSTNSLVIFLAKKYRCSGLPMEDLVQAGAIGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARSSRGIQIP
Subjt: WADAASIDIKDLQKQLQFGWFCQDELLRSTNSLVIFLAKKYRCSGLPMEDLVQAGAIGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARSSRGIQIP
Query: WSLTKAINQIQKARKALNNSGRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKIGDGLNMKYMELTADTSIESPEDTVKRRLMKKDIFNLLEVLESR
WSLTKAINQIQKARKALNNSGRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKIGDGLNMKYMELTADTSIESPEDTVKR LMKKDIFNLLEVLESR
Subjt: WSLTKAINQIQKARKALNNSGRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKIGDGLNMKYMELTADTSIESPEDTVKRRLMKKDIFNLLEVLESR
Query: ERQVLVLRYGLMDSQPKSLEEIGKLLCVSKEWVRKIERKATTKLKNEETVRNLSHYLD
ERQVLVLRYGLMDSQPKSLEEIGKLL VSKEWVRKIERKATTKLKNEETVRNLSHYLD
Subjt: ERQVLVLRYGLMDSQPKSLEEIGKLLCVSKEWVRKIERKATTKLKNEETVRNLSHYLD
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| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A1S3BBM8 RNA polymerase sigma factor sigC | 3.7e-265 | 85.77 | Show/hide |
Query: MGTSFRPNLKWAFQIQTHSRRASPSKLSPYASKGREASFNSGRLSFFSSTCEEGEAISREALKTYTCLSEAPQTLADGLLDLEEKEIEINSGAKSLGHLR
MGT FRPNLKW FQIQTHS + SPSKLSPYASKGREA+FNSGRLSFFSS CEEGE+I RE LKTYTCLSEAPQT D LL+LE EIE+NSGAKSL L
Subjt: MGTSFRPNLKWAFQIQTHSRRASPSKLSPYASKGREASFNSGRLSFFSSTCEEGEAISREALKTYTCLSEAPQTLADGLLDLEEKEIEINSGAKSLGHLR
Query: YGSKNSGPSKVEDNFCSCTSLPTGRASPFGMLMENLDVLEETFTESGMLSLERDILLQLTKLGALEFFNACLSRTLKASSSFHDLSDLPIEVGGDHNVNQ
YG K++ PSKVEDNF S TS+PTG+ASPFG+LMENLDVLEETF ESGMLSLERDI+LQLTKLGALEFFN CLSRTLK +SSFHDLSDLP+E G DHNVNQ
Subjt: YGSKNSGPSKVEDNFCSCTSLPTGRASPFGMLMENLDVLEETFTESGMLSLERDILLQLTKLGALEFFNACLSRTLKASSSFHDLSDLPIEVGGDHNVNQ
Query: KTDDQNDNIVVYSGKRAGRRSVKRRAMDNADKVASRPLATRAAKEKFRS----LRKKASNSKKRRSIVARNEAEMSTGVKVVANLERIRETLEKESGRTA
KT+DQN ++ VYSGKRAGRRSVK+RAMDNADKVASRPLATRA KEK S RKK+SNS KRR +VARNEAEMSTG+KVVANLERIRETLEKESGR A
Subjt: KTDDQNDNIVVYSGKRAGRRSVKRRAMDNADKVASRPLATRAAKEKFRS----LRKKASNSKKRRSIVARNEAEMSTGVKVVANLERIRETLEKESGRTA
Query: SMSCWADAASIDIKDLQKQLQFGWFCQDELLRSTNSLVIFLAKKYRCSGLPMEDLVQAGAIGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARSSRG
SMSCWA+AAS+DIKDLQKQLQFGWFC+DELLRSTNSLV+FLAKKYRCSGLPMEDLVQAGA+GVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVAR+SRG
Subjt: SMSCWADAASIDIKDLQKQLQFGWFCQDELLRSTNSLVIFLAKKYRCSGLPMEDLVQAGAIGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARSSRG
Query: IQIPWSLTKAINQIQKARKALNNSGRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKIGDGLNMKYMELTADTSIESPEDTVKRRLMKKDIFNLLEV
IQIPWSLTKAINQIQKARK LN GRRYSDDDIA+ATGLPLAKVRVASNCLKVVGSVDQK+GDGLNMKYME TADTSI+SPE+TVKR+LMKKDIFN+L+
Subjt: IQIPWSLTKAINQIQKARKALNNSGRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKIGDGLNMKYMELTADTSIESPEDTVKRRLMKKDIFNLLEV
Query: LESRERQVLVLRYGLMDSQPKSLEEIGKLLCVSKEWVRKIERKATTKLKNEETVRNLSHYLD
LESRERQVLVLRYGLMD QPKSLEEIGKLL VSKEWVRKIE+KA TKLKNEETV+NLSHYLD
Subjt: LESRERQVLVLRYGLMDSQPKSLEEIGKLLCVSKEWVRKIERKATTKLKNEETVRNLSHYLD
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| A0A6J1BRC1 RNA polymerase sigma factor sigC isoform X1 | 1.3e-257 | 84.01 | Show/hide |
Query: MGTSFRPNLKWAFQIQTHSRRASPSKLSPYASKGREASFNSGRLSFFSSTCEEGEAISREALKTYTCLSEAPQTLADGLLDLEEKEIEINSGAKSLGHLR
MGTSFRPNLKWAFQ+QTHSR SPSK P+ASKGREASFNS RLSFFS+ CEEGE+ SRE LKTYTCLSEAPQT AD LLDL+ EIEINS A+ L H
Subjt: MGTSFRPNLKWAFQIQTHSRRASPSKLSPYASKGREASFNSGRLSFFSSTCEEGEAISREALKTYTCLSEAPQTLADGLLDLEEKEIEINSGAKSLGHLR
Query: YGSKNSGPSKVEDNFCSCTSLPTGRASPFGMLMENLDVLEETFTESGMLSLERDILLQLTKLGALEFFNACLSRTLKAS-SSFHDLSDLPIEVGGDHNVN
YG KN+GPSK+EDNF SCTSLPTG+AS FGMLMENLDVLEE FTESGMLSLERDI+LQLTKLGALEFFN CLSRTLK S SSF DLSDLPIE GG HNVN
Subjt: YGSKNSGPSKVEDNFCSCTSLPTGRASPFGMLMENLDVLEETFTESGMLSLERDILLQLTKLGALEFFNACLSRTLKAS-SSFHDLSDLPIEVGGDHNVN
Query: QKTDDQNDNIVVYSGKRAGRRSVKRRAMDNADKVASRPLATRAAKEKF----RSLRKKASNSKKRRSIVARNEAEMSTGVKVVANLERIRETLEKESGRT
QKTD QND+I+VYSGK+ GRRS+K RA D ADKVAS+P AT AAKEKF R RK+ NS++RR +VARNEAEMSTGVKVVANLERIRETLEKES +
Subjt: QKTDDQNDNIVVYSGKRAGRRSVKRRAMDNADKVASRPLATRAAKEKF----RSLRKKASNSKKRRSIVARNEAEMSTGVKVVANLERIRETLEKESGRT
Query: ASMSCWADAASIDIKDLQKQLQFGWFCQDELLRSTNSLVIFLAKKYRCSGLPMEDLVQAGAIGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARSSR
ASMSCWADAA IDIKDL KQLQFGWFCQ+ELLRSTNSLV+FLAKKYRC+GLPMEDLVQAGAIGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVAR+SR
Subjt: ASMSCWADAASIDIKDLQKQLQFGWFCQDELLRSTNSLVIFLAKKYRCSGLPMEDLVQAGAIGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARSSR
Query: GIQIPWSLTKAINQIQKARKALNNSGRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKIGDGLNMKYMELTADTSIESPEDTVKRRLMKKDIFNLLE
GIQIPWSLTKAINQIQKARKALNN RRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQK+GDGLNMKYME TADTSI+SPE+TVK++LMKKDIFNLLE
Subjt: GIQIPWSLTKAINQIQKARKALNNSGRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKIGDGLNMKYMELTADTSIESPEDTVKRRLMKKDIFNLLE
Query: VLESRERQVLVLRYGLMDSQPKSLEEIGKLLCVSKEWVRKIERKATTKLKNEETVRNLSHYLD
LE RERQVL LRYGL D QPKSLEEIGKLL VSKEWVRKIE+KA TKLKNEET NL HYLD
Subjt: VLESRERQVLVLRYGLMDSQPKSLEEIGKLLCVSKEWVRKIERKATTKLKNEETVRNLSHYLD
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| A0A6J1HEX7 RNA polymerase sigma factor sigC-like | 7.8e-308 | 99.1 | Show/hide |
Query: MGTSFRPNLKWAFQIQTHSRRASPSKLSPYASKGREASFNSGRLSFFSSTCEEGEAISREALKTYTCLSEAPQTLADGLLDLEEKEIEINSGAKSLGHLR
MGTSFRPNLKWAFQIQTHSRRASPSKLSPYASKGREASFNSGRLSFFSSTCEEGEAISREALKTYTCLSEAPQTLADGLLDLEEKEIEINSGAKSLGHLR
Subjt: MGTSFRPNLKWAFQIQTHSRRASPSKLSPYASKGREASFNSGRLSFFSSTCEEGEAISREALKTYTCLSEAPQTLADGLLDLEEKEIEINSGAKSLGHLR
Query: YGSKNSGPSKVEDNFCSCTSLPTGRASPFGMLMENLDVLEETFTESGMLSLERDILLQLTKLGALEFFNACLSRTLKASSSFHDLSDLPIEVGGDHNVNQ
YGSKNSGPSKVEDNFCSCTSLPTGRASPFGMLMENLDVLEETFTESGMLSLERDI+LQLTKLGALEFFNACLSRTLKASSSF DLSDLPIEVGGDHNVNQ
Subjt: YGSKNSGPSKVEDNFCSCTSLPTGRASPFGMLMENLDVLEETFTESGMLSLERDILLQLTKLGALEFFNACLSRTLKASSSFHDLSDLPIEVGGDHNVNQ
Query: KTDDQNDNIVVYSGKRAGRRSVKRRAMDNADKVASRPLATRAAKEKFRSLRKKASNSKKRRSIVARNEAEMSTGVKVVANLERIRETLEKESGRTASMSC
KTDDQNDNI+VYSGKRAGRRSVKRRAMDNADKVASRPLATRAAKEKFRS RKKASNSKKRRSIVARNEAEMSTGVKVVANLERIRET EKESGRTASMSC
Subjt: KTDDQNDNIVVYSGKRAGRRSVKRRAMDNADKVASRPLATRAAKEKFRSLRKKASNSKKRRSIVARNEAEMSTGVKVVANLERIRETLEKESGRTASMSC
Query: WADAASIDIKDLQKQLQFGWFCQDELLRSTNSLVIFLAKKYRCSGLPMEDLVQAGAIGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARSSRGIQIP
WADAASIDIKDLQKQLQFGWFCQDELLRSTNSLVIFLAKKYRCSGLPMEDLVQAGAIGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARSSRGIQIP
Subjt: WADAASIDIKDLQKQLQFGWFCQDELLRSTNSLVIFLAKKYRCSGLPMEDLVQAGAIGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARSSRGIQIP
Query: WSLTKAINQIQKARKALNNSGRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKIGDGLNMKYMELTADTSIESPEDTVKRRLMKKDIFNLLEVLESR
WSLTKAINQIQKARKALNNSGRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKIGDGLNMKYMELTADTSIESPEDTVKRRLMKKDIFNLLEVLESR
Subjt: WSLTKAINQIQKARKALNNSGRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKIGDGLNMKYMELTADTSIESPEDTVKRRLMKKDIFNLLEVLESR
Query: ERQVLVLRYGLMDSQPKSLEEIGKLLCVSKEWVRKIERKATTKLKNEETVRNLSHYLD
ERQVLVLRYGLMDSQPKSLEEIGKLLCVSKEWVRKIERKATTKLKNEETVRNLSHYLD
Subjt: ERQVLVLRYGLMDSQPKSLEEIGKLLCVSKEWVRKIERKATTKLKNEETVRNLSHYLD
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| A0A6J1KA34 RNA polymerase sigma factor sigC-like isoform X2 | 4.1e-301 | 97.67 | Show/hide |
Query: MGTSFRPNLKWAFQIQTHSRRASPSKLSPYASKGREASFNSGRLSFFSSTCEEGEAISREALKTYTCLSEAPQTLADGLLDLEEKEIEINSGAKSLGHLR
MGTSFRPNLKWAFQIQTHSRRASPSKLSPYASKGREASFNSGRLSFFSSTCEEGEAISREALKTYTCLSEAPQTLADGLLDLEEK EINSGAKSL HL
Subjt: MGTSFRPNLKWAFQIQTHSRRASPSKLSPYASKGREASFNSGRLSFFSSTCEEGEAISREALKTYTCLSEAPQTLADGLLDLEEKEIEINSGAKSLGHLR
Query: YGSKNSGPSKVEDNFCSCTSLPTGRASPFGMLMENLDVLEETFTESGMLSLERDILLQLTKLGALEFFNACLSRTLKASSSFHDLSDLPIEVGGDHNVNQ
YGSKNSGPSKVEDNFCSCTSLPTGRASPF MLMENLDVLEETFTESGMLSLERDI+LQLTKLGALEFFNACLSRTLKASSSF DLSDLPIEVGGDHNVNQ
Subjt: YGSKNSGPSKVEDNFCSCTSLPTGRASPFGMLMENLDVLEETFTESGMLSLERDILLQLTKLGALEFFNACLSRTLKASSSFHDLSDLPIEVGGDHNVNQ
Query: KTDDQNDNIVVYSGKRAGRRSVKRRAMDNADKVASRPLATRAAKEKFRSLRKKASNSKKRRSIVARNEAEMSTGVKVVANLERIRETLEKESGRTASMSC
KTDDQN NI+VYSGKRAGRRSVKRRAMDNADKVASRPLATRAAKEKFRS RKKASNSKKRRSIVARNEAEMSTGVKVVANLERIRETLEKESGRTASMSC
Subjt: KTDDQNDNIVVYSGKRAGRRSVKRRAMDNADKVASRPLATRAAKEKFRSLRKKASNSKKRRSIVARNEAEMSTGVKVVANLERIRETLEKESGRTASMSC
Query: WADAASIDIKDLQKQLQFGWFCQDELLRSTNSLVIFLAKKYRCSGLPMEDLVQAGAIGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARSSRGIQIP
WADA+SIDIKDLQKQLQFGWFCQDELLRSTNSLVIFLAKKYRCSGLPMEDLVQAGAIGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARSSRGIQIP
Subjt: WADAASIDIKDLQKQLQFGWFCQDELLRSTNSLVIFLAKKYRCSGLPMEDLVQAGAIGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARSSRGIQIP
Query: WSLTKAINQIQKARKALNNSGRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKIGDGLNMKYMELTADTSIESPEDTVKRRLMKKDIFNLLEVLESR
WSLTKAINQIQKARKALNNSGRRYSDDD+AKATGLPLAKVRVASNCLKVVGSVDQKIGDGLNMKYMELTADTSIESPEDTVKRRLMKKDIFNLLEVLESR
Subjt: WSLTKAINQIQKARKALNNSGRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKIGDGLNMKYMELTADTSIESPEDTVKRRLMKKDIFNLLEVLESR
Query: ERQVLVLRYGLMDSQPKSLEEIGKLLCVSKEWVRKIERKATTKLKNEETVRNLSHYLD
ERQVLVLRYGLMDSQPKSLEEIGKLL VSKEWVRKIERKATTKLKNEETVRNLSHYLD
Subjt: ERQVLVLRYGLMDSQPKSLEEIGKLLCVSKEWVRKIERKATTKLKNEETVRNLSHYLD
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| A0A6J1KCF5 RNA polymerase sigma factor sigC-like isoform X1 | 1.2e-303 | 97.85 | Show/hide |
Query: MGTSFRPNLKWAFQIQTHSRRASPSKLSPYASKGREASFNSGRLSFFSSTCEEGEAISREALKTYTCLSEAPQTLADGLLDLEEKEIEINSGAKSLGHLR
MGTSFRPNLKWAFQIQTHSRRASPSKLSPYASKGREASFNSGRLSFFSSTCEEGEAISREALKTYTCLSEAPQTLADGLLDLEEKE+EINSGAKSL HL
Subjt: MGTSFRPNLKWAFQIQTHSRRASPSKLSPYASKGREASFNSGRLSFFSSTCEEGEAISREALKTYTCLSEAPQTLADGLLDLEEKEIEINSGAKSLGHLR
Query: YGSKNSGPSKVEDNFCSCTSLPTGRASPFGMLMENLDVLEETFTESGMLSLERDILLQLTKLGALEFFNACLSRTLKASSSFHDLSDLPIEVGGDHNVNQ
YGSKNSGPSKVEDNFCSCTSLPTGRASPF MLMENLDVLEETFTESGMLSLERDI+LQLTKLGALEFFNACLSRTLKASSSF DLSDLPIEVGGDHNVNQ
Subjt: YGSKNSGPSKVEDNFCSCTSLPTGRASPFGMLMENLDVLEETFTESGMLSLERDILLQLTKLGALEFFNACLSRTLKASSSFHDLSDLPIEVGGDHNVNQ
Query: KTDDQNDNIVVYSGKRAGRRSVKRRAMDNADKVASRPLATRAAKEKFRSLRKKASNSKKRRSIVARNEAEMSTGVKVVANLERIRETLEKESGRTASMSC
KTDDQN NI+VYSGKRAGRRSVKRRAMDNADKVASRPLATRAAKEKFRS RKKASNSKKRRSIVARNEAEMSTGVKVVANLERIRETLEKESGRTASMSC
Subjt: KTDDQNDNIVVYSGKRAGRRSVKRRAMDNADKVASRPLATRAAKEKFRSLRKKASNSKKRRSIVARNEAEMSTGVKVVANLERIRETLEKESGRTASMSC
Query: WADAASIDIKDLQKQLQFGWFCQDELLRSTNSLVIFLAKKYRCSGLPMEDLVQAGAIGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARSSRGIQIP
WADA+SIDIKDLQKQLQFGWFCQDELLRSTNSLVIFLAKKYRCSGLPMEDLVQAGAIGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARSSRGIQIP
Subjt: WADAASIDIKDLQKQLQFGWFCQDELLRSTNSLVIFLAKKYRCSGLPMEDLVQAGAIGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARSSRGIQIP
Query: WSLTKAINQIQKARKALNNSGRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKIGDGLNMKYMELTADTSIESPEDTVKRRLMKKDIFNLLEVLESR
WSLTKAINQIQKARKALNNSGRRYSDDD+AKATGLPLAKVRVASNCLKVVGSVDQKIGDGLNMKYMELTADTSIESPEDTVKRRLMKKDIFNLLEVLESR
Subjt: WSLTKAINQIQKARKALNNSGRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKIGDGLNMKYMELTADTSIESPEDTVKRRLMKKDIFNLLEVLESR
Query: ERQVLVLRYGLMDSQPKSLEEIGKLLCVSKEWVRKIERKATTKLKNEETVRNLSHYLD
ERQVLVLRYGLMDSQPKSLEEIGKLL VSKEWVRKIERKATTKLKNEETVRNLSHYLD
Subjt: ERQVLVLRYGLMDSQPKSLEEIGKLLCVSKEWVRKIERKATTKLKNEETVRNLSHYLD
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| SwissProt top hits | e value | %identity | Alignment |
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| O22056 RNA polymerase sigma factor sigB | 5.6e-53 | 32.51 | Show/hide |
Query: NACLSRTLKASSSFHD-LSDLPIEVGGDHNVNQKTDDQNDNIVVYSGKRAGRRSVKRRAMDN------ADKVASRPLATRAAKEK------FRSLRKKAS
N +S + AS+S + + DL E V + + ++ V S ++ R++ + + ++ + K S P R ++ R LR S
Subjt: NACLSRTLKASSSFHD-LSDLPIEVGGDHNVNQKTDDQNDNIVVYSGKRAGRRSVKRRAMDN------ADKVASRPLATRAAKEK------FRSLRKKAS
Query: NSKKRRSIVARNEAEMSTGVKVVANLERIRETLEKESGRTASMSCWADAASIDIKDLQKQLQFGWFCQDELLRSTNSLVIFLAKKYRCSGLPMEDLVQAG
+SK + R E E+S G++ + LER++ L + SGR + + WA AA +D K L++++ G C+D++++S LVI +AK Y+ +G+ ++DLVQ G
Subjt: NSKKRRSIVARNEAEMSTGVKVVANLERIRETLEKESGRTASMSCWADAASIDIKDLQKQLQFGWFCQDELLRSTNSLVIFLAKKYRCSGLPMEDLVQAG
Query: AIGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARSSRGIQIPWSLTKAINQIQKARKAL-NNSGRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVD
G+++G E+FD +GF+FSTY +WI++++ + ++ SR I++P+ + +A ++++ARK L + +G+ +++IA+ATGL + ++ K S+D
Subjt: AIGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARSSRGIQIPWSLTKAINQIQKARKAL-NNSGRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVD
Query: QKIGDGLNMKYMELTADTSIESPEDTVKRRLMKKDIFNLLEVLESRERQVLVLRYGLMDSQPKSLEEIGKLLCVSKEWVRKIERKATTKLKNEETVRNLS
QKIG N+K E+ AD + ED + + M++D+ +L+ L +RE+QV+ R+G+ D + K+L+EIG+++ VS+E VR+IE A KLKN++ +L
Subjt: QKIGDGLNMKYMELTADTSIESPEDTVKRRLMKKDIFNLLEVLESRERQVLVLRYGLMDSQPKSLEEIGKLLCVSKEWVRKIERKATTKLKNEETVRNLS
Query: HYL
YL
Subjt: HYL
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| O24621 RNA polymerase sigma factor sigC | 1.1e-109 | 45.11 | Show/hide |
Query: RLSFFSSTCEEGEAISREALKTYTCLSEAPQTLADGLLDLEEKEIEINSGAKSLGHLRYGSKNSGPSKVEDNFCSCTSLPTGRASPFGMLMENLDVLEET
R SF SS EE ++LK C S +P T + + L+ +N G E ++ S + L + +L +NL LEET
Subjt: RLSFFSSTCEEGEAISREALKTYTCLSEAPQTLADGLLDLEEKEIEINSGAKSLGHLRYGSKNSGPSKVEDNFCSCTSLPTGRASPFGMLMENLDVLEET
Query: FTESGMLSLERDILLQLTKLGALEFFNACLSRTLKASSSFHDLSDLPIEVGGDHNVNQKTDDQNDNIVVYSGKRAGRRSVKRRAM--DNADKVASRPLAT
F + +ERDI+LQ+ KLGA E F CLSR + SS LSD + D + V S +R ++ +R ++ +N D+ +S P+
Subjt: FTESGMLSLERDILLQLTKLGALEFFNACLSRTLKASSSFHDLSDLPIEVGGDHNVNQKTDDQNDNIVVYSGKRAGRRSVKRRAM--DNADKVASRPLAT
Query: RAAKEKFRSLR-KKASNSKKRRSIVARNEAEMSTGVKVVANLERIRETLEKESGRTASMSCWADAASIDIKDLQKQLQFGWFCQDELLRSTNSLVIFLAK
R R ++ +K+R ++RNE EMSTGVK+VA++ERIR LE+ESG+ AS+SCWA AA ++ K L + L +GW+C+DEL++ST SLV+FLA+
Subjt: RAAKEKFRSLR-KKASNSKKRRSIVARNEAEMSTGVKVVANLERIRETLEKESGRTASMSCWADAASIDIKDLQKQLQFGWFCQDELLRSTNSLVIFLAK
Query: KYRCSGLPMEDLVQAGAIGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARSSRGIQIPWSLTKAINQIQKARKALNNS-GRRY-SDDDIAKATGLPL
YR G+ EDL+QAG +GVLQG ERFD RG++FSTY+QYWIRKSMS +V+R +RG+ IP S+ + IN IQKARK L S G +Y +D++IAK TG +
Subjt: KYRCSGLPMEDLVQAGAIGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARSSRGIQIPWSLTKAINQIQKARKALNNS-GRRY-SDDDIAKATGLPL
Query: AKVRVASNCLKVVGSVDQKIGDGLNMKYMELTADTSIESPEDTVKRRLMKKDIFNLLEVLESRERQVLVLRYGLMDSQPKSLEEIGKLLCVSKEWVRKIE
K+R A+ CLKVVGS+D+K+GD K++E T DT++ESPE+ V R+ ++DI +LLE LE RE+QV+VLRYGL D +PKSLEEIGKLL VSKEW+RKIE
Subjt: AKVRVASNCLKVVGSVDQKIGDGLNMKYMELTADTSIESPEDTVKRRLMKKDIFNLLEVLESRERQVLVLRYGLMDSQPKSLEEIGKLLCVSKEWVRKIE
Query: RKATTKLKNEETVRNLSHYLD
R+A KL+++ +L +YL+
Subjt: RKATTKLKNEETVRNLSHYLD
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| P26683 RNA polymerase sigma factor SigA | 1.2e-42 | 31.33 | Show/hide |
Query: DLSDLPIE------VGGDHNVNQKTDDQNDNIVVYSGKRAGRRSVKRRAMDNADKVASRPLATRAAKEKFR--SLRKKASNSKKRRSIVARNEAEMSTGV
+L DL IE + D ++++ + Q D SGK A R RR T++ K+ + S+R + R + A E E++ +
Subjt: DLSDLPIE------VGGDHNVNQKTDDQNDNIVVYSGKRAGRRSVKRRAMDNADKVASRPLATRAAKEKFR--SLRKKASNSKKRRSIVARNEAEMSTGV
Query: KVVANLERIRETLEKESGRTASMSCWADAASIDIKDLQKQLQFGWFCQDELLRSTNSLVIFLAKKYRCSGLPMEDLVQAGAIGVLQGVERFDPKRGFRFS
+ LER+RE L ++ R S WA+A + + + +L G +D++++S LV+ +AKKY GL +DL+Q G++G+++ E+FD ++G++FS
Subjt: KVVANLERIRETLEKESGRTASMSCWADAASIDIKDLQKQLQFGWFCQDELLRSTNSLVIFLAKKYRCSGLPMEDLVQAGAIGVLQGVERFDPKRGFRFS
Query: TYIQYWIRKSMSRVVARSSRGIQIPWSLTKAINQIQKARKALNNS-GRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKIGDGLNMKYMELTADTSI
TY +WIR++++R +A SR I++P L + I++I+K K L+ GR+ ++++IA + + K+R + ++ S++ IG + + + ++
Subjt: TYIQYWIRKSMSRVVARSSRGIQIPWSLTKAINQIQKARKALNNS-GRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKIGDGLNMKYMELTADTSI
Query: ESPEDTVKRRLMKKDIFNLLEVLESRERQVLVLRYGLMDSQPKSLEEIGKLLCVSKEWVRKIERKATTKLKNEETVRNLSHYL
E+PED V + L+++D+ +L+ L RER VL LRYGL D + K+LEEIG++ V++E +R+IE KA KL++ L Y+
Subjt: ESPEDTVKRRLMKKDIFNLLEVLESRERQVLVLRYGLMDSQPKSLEEIGKLLCVSKEWVRKIERKATTKLKNEETVRNLSHYL
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| P38023 RNA polymerase sigma factor SigA1 | 2.4e-43 | 33.33 | Show/hide |
Query: AMDNADKVASRPLATRAAKEKFR------SLRKKASNSKKRRSIVARNEAEMSTGVKVVANLERIRETLEKESGRTASMSCWADAASIDIKDLQKQLQFG
A+D+ D V A AK K R S+R + R + A E E++ + + LERIR+ L ++ R S + WA A + + +++L G
Subjt: AMDNADKVASRPLATRAAKEKFR------SLRKKASNSKKRRSIVARNEAEMSTGVKVVANLERIRETLEKESGRTASMSCWADAASIDIKDLQKQLQFG
Query: WFCQDELLRSTNSLVIFLAKKYRCSGLPMEDLVQAGAIGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARSSRGIQIPWSLTKAINQIQKARKALNN
+D++++S LV+ +AKKY GL +DL+Q G++G+++ E+FD ++G++FSTY +WIR++++R +A SR I++P L + I++I+K K L+
Subjt: WFCQDELLRSTNSLVIFLAKKYRCSGLPMEDLVQAGAIGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARSSRGIQIPWSLTKAINQIQKARKALNN
Query: S-GRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKIGDGLNMKYMELTADTSIESPEDTVKRRLMKKDIFNLLEVLESRERQVLVLRYGLMDSQPKS
GR+ ++++IA + + K+R + ++ S++ IG + + + + E+PED V + L+++D+ +L L RER VL LRYGL D + K+
Subjt: S-GRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKIGDGLNMKYMELTADTSIESPEDTVKRRLMKKDIFNLLEVLESRERQVLVLRYGLMDSQPKS
Query: LEEIGKLLCVSKEWVRKIERKATTKLKNEETVRNLSHYL
LEEIG+L V++E +R+IE KA KL++ L Y+
Subjt: LEEIGKLLCVSKEWVRKIERKATTKLKNEETVRNLSHYL
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| Q9LD95 RNA polymerase sigma factor sigF, chloroplastic | 2.4e-40 | 29.81 | Show/hide |
Query: VVYSGKRAGRRSVKRRA--MDNADKVASRPLATRAAKEKFR-------SLRKKASNSKKRRSIVARNEAEMSTGVKVVANLERIRETLEKESGRTASMSC
+V S ++ RR+ RRA ++ D P T +AK+K++ +L+ + ++ + A+ EAE+ + ++ + LE+++ LE ++G ++
Subjt: VVYSGKRAGRRSVKRRA--MDNADKVASRPLATRAAKEKFR-------SLRKKASNSKKRRSIVARNEAEMSTGVKVVANLERIRETLEKESGRTASMSC
Query: WADAASIDIKDLQKQLQFGWFCQDELLRSTNSLVIFLAKKYRCSGLPMEDLVQAGAIGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARSSRGIQIP
WA+A I L+ + G +++L+ + LV+ +AK+Y+ GL +DL+Q G++G+++ VE+F P+ G RF+TY +WIR+S+ + + ++SR I++P
Subjt: WADAASIDIKDLQKQLQFGWFCQDELLRSTNSLVIFLAKKYRCSGLPMEDLVQAGAIGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARSSRGIQIP
Query: WSLTKAINQIQKARKALNNSGR-RYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKIGDGLNMKYMELTADTSIESPEDTVKRRLMKKDIFNLLEVLES
++ + ++ +ARK G R S +++A G+ K+ + S+ Q I + + E+T D+ IE+P +V ++LM+ + NLL VL
Subjt: WSLTKAINQIQKARKALNNSGR-RYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKIGDGLNMKYMELTADTSIESPEDTVKRRLMKKDIFNLLEVLES
Query: RERQVLVLRYGLMDSQPKSLEEIGKLLCVSKEWVRKIERKATTKLKNEETVRNLSHYLD
+ER+++ LR+G+ + +SL EIG++ +SKE VR++E +A +LK L Y D
Subjt: RERQVLVLRYGLMDSQPKSLEEIGKLLCVSKEWVRKIERKATTKLKNEETVRNLSHYLD
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| Arabidopsis top hits | e value | %identity | Alignment |
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| AT1G08540.1 RNApolymerase sigma subunit 2 | 4.0e-54 | 32.51 | Show/hide |
Query: NACLSRTLKASSSFHD-LSDLPIEVGGDHNVNQKTDDQNDNIVVYSGKRAGRRSVKRRAMDN------ADKVASRPLATRAAKEK------FRSLRKKAS
N +S + AS+S + + DL E V + + ++ V S ++ R++ + + ++ + K S P R ++ R LR S
Subjt: NACLSRTLKASSSFHD-LSDLPIEVGGDHNVNQKTDDQNDNIVVYSGKRAGRRSVKRRAMDN------ADKVASRPLATRAAKEK------FRSLRKKAS
Query: NSKKRRSIVARNEAEMSTGVKVVANLERIRETLEKESGRTASMSCWADAASIDIKDLQKQLQFGWFCQDELLRSTNSLVIFLAKKYRCSGLPMEDLVQAG
+SK + R E E+S G++ + LER++ L + SGR + + WA AA +D K L++++ G C+D++++S LVI +AK Y+ +G+ ++DLVQ G
Subjt: NSKKRRSIVARNEAEMSTGVKVVANLERIRETLEKESGRTASMSCWADAASIDIKDLQKQLQFGWFCQDELLRSTNSLVIFLAKKYRCSGLPMEDLVQAG
Query: AIGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARSSRGIQIPWSLTKAINQIQKARKAL-NNSGRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVD
G+++G E+FD +GF+FSTY +WI++++ + ++ SR I++P+ + +A ++++ARK L + +G+ +++IA+ATGL + ++ K S+D
Subjt: AIGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARSSRGIQIPWSLTKAINQIQKARKAL-NNSGRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVD
Query: QKIGDGLNMKYMELTADTSIESPEDTVKRRLMKKDIFNLLEVLESRERQVLVLRYGLMDSQPKSLEEIGKLLCVSKEWVRKIERKATTKLKNEETVRNLS
QKIG N+K E+ AD + ED + + M++D+ +L+ L +RE+QV+ R+G+ D + K+L+EIG+++ VS+E VR+IE A KLKN++ +L
Subjt: QKIGDGLNMKYMELTADTSIESPEDTVKRRLMKKDIFNLLEVLESRERQVLVLRYGLMDSQPKSLEEIGKLLCVSKEWVRKIERKATTKLKNEETVRNLS
Query: HYL
YL
Subjt: HYL
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| AT1G64860.1 sigma factor A | 3.9e-25 | 25.4 | Show/hide |
Query: DLEEKEIEINSGAKSLGHLRYGSKNSGPSKVEDNFCSCTSLPTGRASPFGMLMENLDVL----------------EETFTESGMLSLERDILLQLTKLGA
D+ EK + +N S H+ +K+ +K N+ L E++DV EE + + ++S + +L L K
Subjt: DLEEKEIEINSGAKSLGHLRYGSKNSGPSKVEDNFCSCTSLPTGRASPFGMLMENLDVL----------------EETFTESGMLSLERDILLQLTKLGA
Query: LEFFNACLSRTLKASSSFHDLSDLPIEVGGDHNVNQKTDDQNDNIVVYSGKRAGRRSVKRRAMDNADKVASRPLATRAAKEKFRSLRKKASNSKKRRSI-
+ +N KA SS E G + +K ++ SG A +R + + N V + ++ ++ ++ R K + +
Subjt: LEFFNACLSRTLKASSSFHDLSDLPIEVGGDHNVNQKTDDQNDNIVVYSGKRAGRRSVKRRAMDNADKVASRPLATRAAKEKFRSLRKKASNSKKRRSI-
Query: VARNEAEMSTGVKVVANLERIRETLEKESGRTASMSCWADAASIDIKDLQKQLQFGWFCQDELLRSTNSLVIFLAKKYRCSGLPMEDLVQAGAIGVLQGV
V R ++ +G+++ + R+++ L G S A + I +LQ L +++L S LV+ +A++Y G M DLVQ G IG+L+G+
Subjt: VARNEAEMSTGVKVVANLERIRETLEKESGRTASMSCWADAASIDIKDLQKQLQFGWFCQDELLRSTNSLVIFLAKKYRCSGLPMEDLVQAGAIGVLQGV
Query: ERFDPKRGFRFSTYIQYWIRKSMSRVVARSSRGIQIPWSLTKAINQIQKARKALNNSGRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKIGDGLN-
E+FD +GFR STY+ +WIR+ +SR + +SR +++P L + + I+ A+ L G S D IA++ + KVR A+ + V S+D+ LN
Subjt: ERFDPKRGFRFSTYIQYWIRKSMSRVVARSSRGIQIPWSLTKAINQIQKARKALNNSGRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKIGDGLN-
Query: ---MKYMELTADTSIE-SPEDTVKRRLMKKDIFNLLE-VLESRERQVLVLRYGLMDSQPKSLEEIGKLLCVSKEWVRKIERKATTKLKNEETVRNL
+ ADT +E +P +K+++ L+ L RE++++ L YGL D + + E+I K + +S+E VR++ A KLK+ R +
Subjt: ---MKYMELTADTSIE-SPEDTVKRRLMKKDIFNLLE-VLESRERQVLVLRYGLMDSQPKSLEEIGKLLCVSKEWVRKIERKATTKLKNEETVRNL
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| AT2G36990.1 RNApolymerase sigma-subunit F | 1.7e-41 | 29.81 | Show/hide |
Query: VVYSGKRAGRRSVKRRA--MDNADKVASRPLATRAAKEKFR-------SLRKKASNSKKRRSIVARNEAEMSTGVKVVANLERIRETLEKESGRTASMSC
+V S ++ RR+ RRA ++ D P T +AK+K++ +L+ + ++ + A+ EAE+ + ++ + LE+++ LE ++G ++
Subjt: VVYSGKRAGRRSVKRRA--MDNADKVASRPLATRAAKEKFR-------SLRKKASNSKKRRSIVARNEAEMSTGVKVVANLERIRETLEKESGRTASMSC
Query: WADAASIDIKDLQKQLQFGWFCQDELLRSTNSLVIFLAKKYRCSGLPMEDLVQAGAIGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARSSRGIQIP
WA+A I L+ + G +++L+ + LV+ +AK+Y+ GL +DL+Q G++G+++ VE+F P+ G RF+TY +WIR+S+ + + ++SR I++P
Subjt: WADAASIDIKDLQKQLQFGWFCQDELLRSTNSLVIFLAKKYRCSGLPMEDLVQAGAIGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARSSRGIQIP
Query: WSLTKAINQIQKARKALNNSGR-RYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKIGDGLNMKYMELTADTSIESPEDTVKRRLMKKDIFNLLEVLES
++ + ++ +ARK G R S +++A G+ K+ + S+ Q I + + E+T D+ IE+P +V ++LM+ + NLL VL
Subjt: WSLTKAINQIQKARKALNNSGR-RYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKIGDGLNMKYMELTADTSIESPEDTVKRRLMKKDIFNLLEVLES
Query: RERQVLVLRYGLMDSQPKSLEEIGKLLCVSKEWVRKIERKATTKLKNEETVRNLSHYLD
+ER+++ LR+G+ + +SL EIG++ +SKE VR++E +A +LK L Y D
Subjt: RERQVLVLRYGLMDSQPKSLEEIGKLLCVSKEWVRKIERKATTKLKNEETVRNLSHYLD
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| AT3G53920.1 RNApolymerase sigma-subunit C | 7.9e-111 | 45.11 | Show/hide |
Query: RLSFFSSTCEEGEAISREALKTYTCLSEAPQTLADGLLDLEEKEIEINSGAKSLGHLRYGSKNSGPSKVEDNFCSCTSLPTGRASPFGMLMENLDVLEET
R SF SS EE ++LK C S +P T + + L+ +N G E ++ S + L + +L +NL LEET
Subjt: RLSFFSSTCEEGEAISREALKTYTCLSEAPQTLADGLLDLEEKEIEINSGAKSLGHLRYGSKNSGPSKVEDNFCSCTSLPTGRASPFGMLMENLDVLEET
Query: FTESGMLSLERDILLQLTKLGALEFFNACLSRTLKASSSFHDLSDLPIEVGGDHNVNQKTDDQNDNIVVYSGKRAGRRSVKRRAM--DNADKVASRPLAT
F + +ERDI+LQ+ KLGA E F CLSR + SS LSD + D + V S +R ++ +R ++ +N D+ +S P+
Subjt: FTESGMLSLERDILLQLTKLGALEFFNACLSRTLKASSSFHDLSDLPIEVGGDHNVNQKTDDQNDNIVVYSGKRAGRRSVKRRAM--DNADKVASRPLAT
Query: RAAKEKFRSLR-KKASNSKKRRSIVARNEAEMSTGVKVVANLERIRETLEKESGRTASMSCWADAASIDIKDLQKQLQFGWFCQDELLRSTNSLVIFLAK
R R ++ +K+R ++RNE EMSTGVK+VA++ERIR LE+ESG+ AS+SCWA AA ++ K L + L +GW+C+DEL++ST SLV+FLA+
Subjt: RAAKEKFRSLR-KKASNSKKRRSIVARNEAEMSTGVKVVANLERIRETLEKESGRTASMSCWADAASIDIKDLQKQLQFGWFCQDELLRSTNSLVIFLAK
Query: KYRCSGLPMEDLVQAGAIGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARSSRGIQIPWSLTKAINQIQKARKALNNS-GRRY-SDDDIAKATGLPL
YR G+ EDL+QAG +GVLQG ERFD RG++FSTY+QYWIRKSMS +V+R +RG+ IP S+ + IN IQKARK L S G +Y +D++IAK TG +
Subjt: KYRCSGLPMEDLVQAGAIGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARSSRGIQIPWSLTKAINQIQKARKALNNS-GRRY-SDDDIAKATGLPL
Query: AKVRVASNCLKVVGSVDQKIGDGLNMKYMELTADTSIESPEDTVKRRLMKKDIFNLLEVLESRERQVLVLRYGLMDSQPKSLEEIGKLLCVSKEWVRKIE
K+R A+ CLKVVGS+D+K+GD K++E T DT++ESPE+ V R+ ++DI +LLE LE RE+QV+VLRYGL D +PKSLEEIGKLL VSKEW+RKIE
Subjt: AKVRVASNCLKVVGSVDQKIGDGLNMKYMELTADTSIESPEDTVKRRLMKKDIFNLLEVLESRERQVLVLRYGLMDSQPKSLEEIGKLLCVSKEWVRKIE
Query: RKATTKLKNEETVRNLSHYLD
R+A KL+++ +L +YL+
Subjt: RKATTKLKNEETVRNLSHYLD
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| AT5G13730.1 sigma factor 4 | 9.2e-35 | 36.6 | Show/hide |
Query: QDELLRSTNSLVIFLAKKYRCSGLPMEDLVQAGAIGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARSSRGIQIPWSLTKAINQIQKARKALNNSGR
++++ R LV+ +A Y+ GL ++DL+Q G+IG+L+G ERFDP RG++ STY+ +WI++++ R +A SR +++P S+ + ++ +A L R
Subjt: QDELLRSTNSLVIFLAKKYRCSGLPMEDLVQAGAIGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARSSRGIQIPWSLTKAINQIQKARKALNNSGR
Query: RY-SDDDIAKATGLPLAKVRVASNCLKVVGSVDQKIGDGLNMKYMELTADTSIESPEDTVKRRLMKKDIFNLLEVLESRERQVLVLRYGLMDSQPKSLEE
R S ++IA+ L ++ VR+A + S+D+ M E+ PE+ VKR MK +I LL L +RE +VL L +GL P S EE
Subjt: RY-SDDDIAKATGLPLAKVRVASNCLKVVGSVDQKIGDGLNMKYMELTADTSIESPEDTVKRRLMKKDIFNLLEVLESRERQVLVLRYGLMDSQPKSLEE
Query: IGKLLCVSKEWVRKIERKATTKLKNEETVRNLSHY
IGK L +S+E VR+I A KL+N V +L Y
Subjt: IGKLLCVSKEWVRKIERKATTKLKNEETVRNLSHY
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