CuGenDBv2

Gene ID	Carg08276
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	SWIM-type domain-containing protein
Genome location	Carg_Chr05:3102153..3103356
RNA-Seq Expression	Carg08276
Synteny	Carg08276
Gene Ontology terms	GO:0016310 - phosphorylation (biological process) GO:0016567 - protein ubiquitination (biological process) GO:0008270 - zinc ion binding (molecular function) GO:0016301 - kinase activity (molecular function) GO:0061630 - ubiquitin protein ligase activity (molecular function)
InterPro domains	IPR007527 - Zinc finger, SWIM-type IPR013083 - Zinc finger, RING/FYVE/PHD-type IPR039903 - E3 ubiquitin-protein ligase Zswim2

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6598775.1 hypothetical protein SDJN03_08553, partial [Cucurbita argyrosperma subsp. sororia]

2.4e-130

94.8

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Query:  MESVASTSSSPPDGPRLHLHRFKPSQAVADRIVRALHHHLHLLYRSNSNFFVLGATGNVYIVSLSSTPSCTCPDRITPCKHILFIYIRALGLSLDDVCLR
        MESVASTSSSPPDGPRLHLHRFKPSQAVADRIVRALHHHLHLLYRSNSNFFVLGATGNVYIVSLSSTPSCTCPDRITPCKHILFIYIRALGLSLDDVCLR
Subjt:  MESVASTSSSPPDGPRLHLHRFKPSQAVADRIVRALHHHLHLLYRSNSNFFVLGATGNVYIVSLSSTPSCTCPDRITPCKHILFIYIRALGLSLDDVCLR

Query:  RRTLRPCQLNRLLAAPIMLESLAEIGIRRIFHQQFFQVKERGSSANVVEEGTACPVCLDDMKKNDRVVACSTCRNLVHEDCFLRFSPALLIHKGRRKQEH
        RRTLRPCQLNRLLAAPIMLESLAEIGIRRIFHQQFFQVKERGSSANVVEEGTACPVCLDDMKKNDRVVACSTCRNLVHEDCFL            RKQEH
Subjt:  RRTLRPCQLNRLLAAPIMLESLAEIGIRRIFHQQFFQVKERGSSANVVEEGTACPVCLDDMKKNDRVVACSTCRNLVHEDCFLRFSPALLIHKGRRKQEH

Query:  SPKLLLDPVQVASGAAHTVDGHGDKGRSRVLGNDKIVDCFTLLDCVVAFP
        SPKLLLDPVQVASGAAHTVDGHGDKGRSRVLGNDKIVDCFTLLD VVAFP
Subjt:  SPKLLLDPVQVASGAAHTVDGHGDKGRSRVLGNDKIVDCFTLLDCVVAFP

KAG7029713.1 hypothetical protein SDJN02_08055, partial [Cucurbita argyrosperma subsp. argyrosperma]

1.1e-141

100

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Query:  MESVASTSSSPPDGPRLHLHRFKPSQAVADRIVRALHHHLHLLYRSNSNFFVLGATGNVYIVSLSSTPSCTCPDRITPCKHILFIYIRALGLSLDDVCLR
        MESVASTSSSPPDGPRLHLHRFKPSQAVADRIVRALHHHLHLLYRSNSNFFVLGATGNVYIVSLSSTPSCTCPDRITPCKHILFIYIRALGLSLDDVCLR
Subjt:  MESVASTSSSPPDGPRLHLHRFKPSQAVADRIVRALHHHLHLLYRSNSNFFVLGATGNVYIVSLSSTPSCTCPDRITPCKHILFIYIRALGLSLDDVCLR

Query:  RRTLRPCQLNRLLAAPIMLESLAEIGIRRIFHQQFFQVKERGSSANVVEEGTACPVCLDDMKKNDRVVACSTCRNLVHEDCFLRFSPALLIHKGRRKQEH
        RRTLRPCQLNRLLAAPIMLESLAEIGIRRIFHQQFFQVKERGSSANVVEEGTACPVCLDDMKKNDRVVACSTCRNLVHEDCFLRFSPALLIHKGRRKQEH
Subjt:  RRTLRPCQLNRLLAAPIMLESLAEIGIRRIFHQQFFQVKERGSSANVVEEGTACPVCLDDMKKNDRVVACSTCRNLVHEDCFLRFSPALLIHKGRRKQEH

Query:  SPKLLLDPVQVASGAAHTVDGHGDKGRSRVLGNDKIVDCFTLLDCVVAFP
        SPKLLLDPVQVASGAAHTVDGHGDKGRSRVLGNDKIVDCFTLLDCVVAFP
Subjt:  SPKLLLDPVQVASGAAHTVDGHGDKGRSRVLGNDKIVDCFTLLDCVVAFP

XP_022997524.1 uncharacterized protein LOC111492417 [Cucurbita maxima]

1.0e-99

94.76

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Query:  MESVASTSSSPPDGPRLHLHRFKPSQAVADRIVRALHHHLHLLYRSNSNFFVLGATGNVYIVSLSSTPSCTCPDRITPCKHILFIYIRALGLSLDDVCLR
        MESVASTSSSPPDGPRLHLHRFKPSQAVADRI+RALHHHLHLLYRSNSNFFVLGATGNVYIV+LSSTPSCTCPDRITPCKHILFIYIRALGLSLDDVCLR
Subjt:  MESVASTSSSPPDGPRLHLHRFKPSQAVADRIVRALHHHLHLLYRSNSNFFVLGATGNVYIVSLSSTPSCTCPDRITPCKHILFIYIRALGLSLDDVCLR

Query:  RRTLRPCQLNRLLAAPIMLESLAEIGIRRIFHQQFFQVKERGSSANVVEEGTACPVCLDDMKKNDRVVACSTCRNLVHEDCFLRFSPALLI
        RRTLRPCQLNRLLAAPIMLESLAEIGIRRIFHQQFFQVKERGSSANVVEEGTACPVCLDDMKKNDRVVACSTCRNLVHEDCF R +  +++
Subjt:  RRTLRPCQLNRLLAAPIMLESLAEIGIRRIFHQQFFQVKERGSSANVVEEGTACPVCLDDMKKNDRVVACSTCRNLVHEDCFLRFSPALLI

XP_023521856.1 uncharacterized protein LOC111785706 [Cucurbita pepo subsp. pepo]

2.6e-100

93.91

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Query:  MESVASTSSSPPDGPRLHLHRFKPSQAVADRIVRALHHHLHLLYRSNSNFFVLGATGNVYIVSLSSTPSCTCPDRITPCKHILFIYIRALGLSLDDVCLR
        MESVASTSSSPPDGPRLHLHRFKPSQAVADRIVRALHHHLHLLYRSNSNFFVLGATGNVYIVSLSSTPSCTCPDRITPCKHILFIYIRALG+SLDDVCLR
Subjt:  MESVASTSSSPPDGPRLHLHRFKPSQAVADRIVRALHHHLHLLYRSNSNFFVLGATGNVYIVSLSSTPSCTCPDRITPCKHILFIYIRALGLSLDDVCLR

Query:  RRTLRPCQLNRLLAAPIMLESLAEIGIRRIFHQQFFQVKERGSSANVVEEGTACPVCLDDMKKNDRVVACSTCRNLVHEDCFLRFSPALLIHKGRRK
        RRTLRPCQLNRLLAAPI+LESLAEIGIRRIFHQQFFQVKERGSSANVVEEGTACPVCLDDMKKNDRVVACSTCRNLVHEDCF R+  +    KGRR+
Subjt:  RRTLRPCQLNRLLAAPIMLESLAEIGIRRIFHQQFFQVKERGSSANVVEEGTACPVCLDDMKKNDRVVACSTCRNLVHEDCFLRFSPALLIHKGRRK

XP_023546870.1 uncharacterized protein LOC111805851 [Cucurbita pepo subsp. pepo]

2.6e-100

93.91

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Query:  MESVASTSSSPPDGPRLHLHRFKPSQAVADRIVRALHHHLHLLYRSNSNFFVLGATGNVYIVSLSSTPSCTCPDRITPCKHILFIYIRALGLSLDDVCLR
        MESVASTSSSPPDGPRLHLHRFKPSQAVADRIVRALHHHLHLLYRSNSNFFVLGATGNVYIVSLSSTPSCTCPDRITPCKHILFIYIRALG+SLDDVCLR
Subjt:  MESVASTSSSPPDGPRLHLHRFKPSQAVADRIVRALHHHLHLLYRSNSNFFVLGATGNVYIVSLSSTPSCTCPDRITPCKHILFIYIRALGLSLDDVCLR

Query:  RRTLRPCQLNRLLAAPIMLESLAEIGIRRIFHQQFFQVKERGSSANVVEEGTACPVCLDDMKKNDRVVACSTCRNLVHEDCFLRFSPALLIHKGRRK
        RRTLRPCQLNRLLAAPI+LESLAEIGIRRIFHQQFFQVKERGSSANVVEEGTACPVCLDDMKKNDRVVACSTCRNLVHEDCF R+  +    KGRR+
Subjt:  RRTLRPCQLNRLLAAPIMLESLAEIGIRRIFHQQFFQVKERGSSANVVEEGTACPVCLDDMKKNDRVVACSTCRNLVHEDCFLRFSPALLIHKGRRK

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LS10 SWIM-type domain-containing protein

3.6e-79

76.96

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Query:  MESVASTSSSPPDGPRLHLHRFKPSQAVADRIVRALHHHLHLLYRSNSNFFVLGATGNVYIVSLSSTPSCTCPDRITPCKHILFIYIRALGLSLDDVCLR
        MESVAST SSP   P     RFKPSQ VADRIVRALHHHL LL+RS SNFFVLGATGNVYIVSLSSTPSCTCPDRITPCKHILFIY++ALGLSLDDVCLR
Subjt:  MESVASTSSSPPDGPRLHLHRFKPSQAVADRIVRALHHHLHLLYRSNSNFFVLGATGNVYIVSLSSTPSCTCPDRITPCKHILFIYIRALGLSLDDVCLR

Query:  RRTLRPCQLNRLLAAPIMLESLAEIGIRRIFHQQFFQVKERGSSANV--------VEEGTACPVCLDDMKKNDRVVACSTCRNLVHEDCFLRFSPALLIH
        RRTLRPCQLNRLLAAPIML+SLAEIG+R++FHQQFFQV +R +S++         +E+G+ACPVCLDDMKK DRVVACSTCRNLVHEDCF R+  +    
Subjt:  RRTLRPCQLNRLLAAPIMLESLAEIGIRRIFHQQFFQVKERGSSANV--------VEEGTACPVCLDDMKKNDRVVACSTCRNLVHEDCFLRFSPALLIH

Query:  KGRR
        KGRR
Subjt:  KGRR

A0A1S4DW96 uncharacterized protein LOC103488177

8.6e-81

77.83

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Query:  MESVASTSSSPPDGPRLHLHRFKPSQAVADRIVRALHHHLHLLYRSNSNFFVLGATGNVYIVSLSSTPSCTCPDRITPCKHILFIYIRALGLSLDDVCLR
        MESVASTSS  P      + RFKPSQ VADRIVRALHHHL LL+RS SNFFVLGATGNVYIVSLSSTPSCTCPDRITPCKHILFIY++ALGLSLDDVCLR
Subjt:  MESVASTSSSPPDGPRLHLHRFKPSQAVADRIVRALHHHLHLLYRSNSNFFVLGATGNVYIVSLSSTPSCTCPDRITPCKHILFIYIRALGLSLDDVCLR

Query:  RRTLRPCQLNRLLAAPIMLESLAEIGIRRIFHQQFFQVKERGSSANV-------VEEGTACPVCLDDMKKNDRVVACSTCRNLVHEDCFLRFSPALLIHK
        RRTLRPCQLNRLLAAPIML+SLAEIG+R++FHQQFFQV +R  S++        +E+GTACPVCLDDMKKNDRVVACSTCRNLVHEDCF R+  +    K
Subjt:  RRTLRPCQLNRLLAAPIMLESLAEIGIRRIFHQQFFQVKERGSSANV-------VEEGTACPVCLDDMKKNDRVVACSTCRNLVHEDCFLRFSPALLIHK

Query:  GRR
        GRR
Subjt:  GRR

A0A5A7VCN6 SWIM-type domain-containing protein

8.6e-81

77.83

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Query:  MESVASTSSSPPDGPRLHLHRFKPSQAVADRIVRALHHHLHLLYRSNSNFFVLGATGNVYIVSLSSTPSCTCPDRITPCKHILFIYIRALGLSLDDVCLR
        MESVASTSS  P      + RFKPSQ VADRIVRALHHHL LL+RS SNFFVLGATGNVYIVSLSSTPSCTCPDRITPCKHILFIY++ALGLSLDDVCLR
Subjt:  MESVASTSSSPPDGPRLHLHRFKPSQAVADRIVRALHHHLHLLYRSNSNFFVLGATGNVYIVSLSSTPSCTCPDRITPCKHILFIYIRALGLSLDDVCLR

Query:  RRTLRPCQLNRLLAAPIMLESLAEIGIRRIFHQQFFQVKERGSSANV-------VEEGTACPVCLDDMKKNDRVVACSTCRNLVHEDCFLRFSPALLIHK
        RRTLRPCQLNRLLAAPIML+SLAEIG+R++FHQQFFQV +R  S++        +E+GTACPVCLDDMKKNDRVVACSTCRNLVHEDCF R+  +    K
Subjt:  RRTLRPCQLNRLLAAPIMLESLAEIGIRRIFHQQFFQVKERGSSANV-------VEEGTACPVCLDDMKKNDRVVACSTCRNLVHEDCFLRFSPALLIHK

Query:  GRR
        GRR
Subjt:  GRR

A0A6J1BPZ4 uncharacterized protein LOC111004703

1.3e-81

79.9

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Query:  MESVASTSSSPPDGPRLHLHRFKPSQAVADRIVRALHHHLHLLYRSNSNFFVLGATGNVYIVSLSSTPSCTCPDRITPCKHILFIYIRALGLSLDDVCLR
        MESVAST SSPP  PRLHL RFKPSQAVADRIVRALHHHL LL+RS+SNFFVLGATGNVYIVSLS+TPSC+CPDRITPCKHILFIYIRALG+SLDD CLR
Subjt:  MESVASTSSSPPDGPRLHLHRFKPSQAVADRIVRALHHHLHLLYRSNSNFFVLGATGNVYIVSLSSTPSCTCPDRITPCKHILFIYIRALGLSLDDVCLR

Query:  RRTLRPCQLNRLLAAPIMLESLAEIGIRRIFHQQFFQVKERGSSANV-VEEGTACPVCLDDMKK--NDRVVACSTCRNLVHEDCFLRFSPALLIHKGRR
        RRTLRPC LNRLL APIMLES+A IG+RR+FHQ+FFQVK R S++ V VE+GT CPVCLD+MKK  +DRVVAC TCRN+VHEDCFLR+  +    KGRR
Subjt:  RRTLRPCQLNRLLAAPIMLESLAEIGIRRIFHQQFFQVKERGSSANV-VEEGTACPVCLDDMKK--NDRVVACSTCRNLVHEDCFLRFSPALLIHKGRR

A0A6J1KBL6 uncharacterized protein LOC111492417

4.8e-100

94.76

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Query:  MESVASTSSSPPDGPRLHLHRFKPSQAVADRIVRALHHHLHLLYRSNSNFFVLGATGNVYIVSLSSTPSCTCPDRITPCKHILFIYIRALGLSLDDVCLR
        MESVASTSSSPPDGPRLHLHRFKPSQAVADRI+RALHHHLHLLYRSNSNFFVLGATGNVYIV+LSSTPSCTCPDRITPCKHILFIYIRALGLSLDDVCLR
Subjt:  MESVASTSSSPPDGPRLHLHRFKPSQAVADRIVRALHHHLHLLYRSNSNFFVLGATGNVYIVSLSSTPSCTCPDRITPCKHILFIYIRALGLSLDDVCLR

Query:  RRTLRPCQLNRLLAAPIMLESLAEIGIRRIFHQQFFQVKERGSSANVVEEGTACPVCLDDMKKNDRVVACSTCRNLVHEDCFLRFSPALLI
        RRTLRPCQLNRLLAAPIMLESLAEIGIRRIFHQQFFQVKERGSSANVVEEGTACPVCLDDMKKNDRVVACSTCRNLVHEDCF R +  +++
Subjt:  RRTLRPCQLNRLLAAPIMLESLAEIGIRRIFHQQFFQVKERGSSANVVEEGTACPVCLDDMKKNDRVVACSTCRNLVHEDCFLRFSPALLI

SwissProt top hits

e value

%identity

Alignment

Q13233 Mitogen-activated protein kinase kinase kinase 1

3.3e-05

26.95

Show/hide

Query:  RIVRALHHHLHLLYRSNSNFFVLG--ATGNVYIVSLSSTPSCTCPDRITPCKHILFIYIRALGLSLDDVCLRRRTLRPCQLNRL-----------LAAPI
        R+ + +   L+LL +   N F++G  +  N Y V +    +C+C  R T C H+LF+ +R   L   D  L R+TL+  ++  L           + AP 
Subjt:  RIVRALHHHLHLLYRSNSNFFVLG--ATGNVYIVSLSSTPSCTCPDRITPCKHILFIYIRALGLSLDDVCLRRRTLRPCQLNRL-----------LAAPI

Query:  MLESLAEIGIRRIFHQQFFQVKERGSSANVV--EEGTACPVCLDDMKKNDRVVACST-CRNLVHEDC
               +      H          SS N +  EE   CP+CL  M   + +  C   CRN +H  C
Subjt:  MLESLAEIGIRRIFHQQFFQVKERGSSANVV--EEGTACPVCLDDMKKNDRVVACST-CRNLVHEDC

Q62925 Mitogen-activated protein kinase kinase kinase 1

2.5e-05

26.95

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Query:  RIVRALHHHLHLLYRSNSNFFVLG--ATGNVYIVSLSSTPSCTCPDRITPCKHILFIYIRALGLSLDDVCLRRRTLRPCQLNRL-----------LAAPI
        R+ + +   L+LL +   N F++G  +  N Y V +    +C+C  R T C H+LF+ +R   L   D  L R+TL+  ++  L           + AP 
Subjt:  RIVRALHHHLHLLYRSNSNFFVLG--ATGNVYIVSLSSTPSCTCPDRITPCKHILFIYIRALGLSLDDVCLRRRTLRPCQLNRL-----------LAAPI

Query:  MLESLAEIGIRRIFHQQFFQVKERGSSANVV--EEGTACPVCLDDMKKNDRVVACST-CRNLVHEDC
               +      H          SS N +  EE   CP+CL  M   + +  C   CRN +H  C
Subjt:  MLESLAEIGIRRIFHQQFFQVKERGSSANVV--EEGTACPVCLDDMKKNDRVVACST-CRNLVHEDC

Arabidopsis top hits

e value

%identity

Alignment

AT5G11620.1 SWIM zinc finger family protein / mitogen-activated protein kinase kinase kinase (MAPKKK)-related

6.8e-38

43.05

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Query:  MESVASTSSSPPDGPRLHLHRFKPSQAVADRIVRALHHHLHLLYRSNS-NFFVLGATGNVYIVSLSSTPSCTCPDRITPCKHILFIYIRALGLSLDDVCL
        MESV S   SP    R   H    +Q VADRI+RAL H + LL+R N+  F VLGAT NVY V+L +TP+CTCPDR  PCKHILF+ IR LG+ LDD CL
Subjt:  MESVASTSSSPPDGPRLHLHRFKPSQAVADRIVRALHHHLHLLYRSNS-NFFVLGATGNVYIVSLSSTPSCTCPDRITPCKHILFIYIRALGLSLDDVCL

Query:  RRRTLRPCQLNRLLAAPIMLESLAEIGIRRIFHQQF-FQVKERGSSAN-----------VVEEGTACPVCLDDM--------------KKNDRVVACSTC
        R+R LR C L  L +AP   + LA   +++ F Q F     + G + N           V EE   CP+CLDD+              +K   VV C  C
Subjt:  RRRTLRPCQLNRLLAAPIMLESLAEIGIRRIFHQQF-FQVKERGSSAN-----------VVEEGTACPVCLDDM--------------KKNDRVVACSTC

Query:  RNLVHEDCFLRFSPALLIHKGRR
        +N VH++C L +  +    +GRR
Subjt:  RNLVHEDCFLRFSPALLIHKGRR

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGAATCCGTTGCCTCTACTTCGTCGTCCCCACCGGATGGCCCCCGTCTTCACCTTCATCGGTTCAAGCCCTCCCAAGCTGTGGCTGACCGGATTGTTCGAGCTCTCCA
CCATCACCTCCACCTCCTTTACCGCTCCAATTCTAACTTCTTTGTGTTGGGAGCCACAGGCAATGTTTACATCGTGTCTCTATCCTCCACCCCTTCGTGTACTTGTCCCG
ATCGTATTACCCCATGCAAACACATACTATTTATCTACATTCGAGCTCTGGGCTTGTCGCTTGACGATGTATGTCTTCGGAGGAGAACGCTTCGACCTTGCCAGTTGAAT
CGTTTGCTTGCTGCACCTATAATGTTAGAATCACTTGCAGAGATTGGCATACGTAGAATATTTCATCAACAATTCTTTCAGGTAAAAGAAAGAGGTTCTTCTGCAAATGT
TGTGGAAGAAGGGACTGCATGTCCTGTTTGTTTGGATGATATGAAGAAGAACGATCGTGTTGTAGCTTGTTCGACATGTCGGAATCTTGTTCATGAAGATTGTTTCTTGA
GATTCTCTCCTGCTTTACTCATTCATAAAGGCCGTAGGAAGCAAGAACATTCCCCAAAGTTGCTTCTGGATCCTGTTCAAGTTGCTTCTGGGGCTGCTCATACTGTCGAT
GGTCATGGCGACAAAGGAAGAAGCCGAGTTCTTGGAAATGATAAGATTGTCGATTGTTTTACCCTTCTCGATTGTGTTGTGGCCTTCCCTTAA

mRNA sequence

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Protein sequence

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MESVASTSSSPPDGPRLHLHRFKPSQAVADRIVRALHHHLHLLYRSNSNFFVLGATGNVYIVSLSSTPSCTCPDRITPCKHILFIYIRALGLSLDDVCLRRRTLRPCQLN
RLLAAPIMLESLAEIGIRRIFHQQFFQVKERGSSANVVEEGTACPVCLDDMKKNDRVVACSTCRNLVHEDCFLRFSPALLIHKGRRKQEHSPKLLLDPVQVASGAAHTVD
GHGDKGRSRVLGNDKIVDCFTLLDCVVAFP

Carg08276 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome