CuGenDBv2

Gene ID	Carg08321
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	selenoprotein H-like
Genome location	Carg_Chr05:3388097..3391688
RNA-Seq Expression	Carg08321
Synteny	Carg08321
Gene Ontology terms	GO:0005794 - Golgi apparatus (cellular component)
InterPro domains	IPR011893 - Selenoprotein, Rdx-type

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6598818.1 hypothetical protein SDJN03_08596, partial [Cucurbita argyrosperma subsp. sororia]

1.3e-88

100

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Query:  MAPRKRSKNQEDEPAAAEEKPAPVSSMVTRRSPRLAVNSKADLVVEEAVTELPKSKKVKRAPKENGKAKEVGNEGEEIDAASKKLSKDAKNRTVVIEFCK
        MAPRKRSKNQEDEPAAAEEKPAPVSSMVTRRSPRLAVNSKADLVVEEAVTELPKSKKVKRAPKENGKAKEVGNEGEEIDAASKKLSKDAKNRTVVIEFCK
Subjt:  MAPRKRSKNQEDEPAAAEEKPAPVSSMVTRRSPRLAVNSKADLVVEEAVTELPKSKKVKRAPKENGKAKEVGNEGEEIDAASKKLSKDAKNRTVVIEFCK

Query:  QCQSFKKRAIQVQSGLENGVSGITVLLNPNKPRKGCFEIRSDDGEKFISLLDMKRPFTRMKELNMEEVISDIIEKIKG
        QCQSFKKRAIQVQSGLENGVSGITVLLNPNKPRKGCFEIRSDDGEKFISLLDMKRPFTRMKELNMEEVISDIIEKIKG
Subjt:  QCQSFKKRAIQVQSGLENGVSGITVLLNPNKPRKGCFEIRSDDGEKFISLLDMKRPFTRMKELNMEEVISDIIEKIKG

XP_022997470.1 selenoprotein H-like [Cucurbita maxima]

4.5e-86

98.32

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Query:  MAPRKRSKNQEDEP-AAAEEKPAPVSSMVTRRSPRLAVNSKADLVVEEAVTELPKSKKVKRAPKENGKAKEVGNEGEEIDAASKKLSKDAKNRTVVIEFC
        MAPRKRSKNQED+P AAAEEKPAPVSSMVTRRSPRLAVNS ADLVVEEAVTELPKSKKVKRAPKENGKAKEVGNEGEEIDAASKKLSKDAKNRTVVIEFC
Subjt:  MAPRKRSKNQEDEP-AAAEEKPAPVSSMVTRRSPRLAVNSKADLVVEEAVTELPKSKKVKRAPKENGKAKEVGNEGEEIDAASKKLSKDAKNRTVVIEFC

Query:  KQCQSFKKRAIQVQSGLENGVSGITVLLNPNKPRKGCFEIRSDDGEKFISLLDMKRPFTRMKELNMEEVISDIIEKIKG
        KQCQSFKKRAIQVQSGLENGVSGITVLLNPNKPRKGCFEIRSDDGEKFISLLDMKRPFTRMKELNMEEVISDIIEKIKG
Subjt:  KQCQSFKKRAIQVQSGLENGVSGITVLLNPNKPRKGCFEIRSDDGEKFISLLDMKRPFTRMKELNMEEVISDIIEKIKG

XP_023536837.1 selenoprotein H-like [Cucurbita pepo subsp. pepo]

1.4e-68

80.9

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Query:  MAPRKRSKNQEDEPAAAEEKPAPVSSMVTRRSPRLAVNSKADLVVEEAVTELPKSKKVKRAPKENGKAKEVGNEGEEIDAASKKLSKDAKNRTVVIEFCK
        MAP+KRSK QEDE AAA  KP P SS  TRRSPRLA NSKADL VEE V +LPK KK KRAPKENGKA+EV NEGE++DAAS+KL  +AKNR VVIE CK
Subjt:  MAPRKRSKNQEDEPAAAEEKPAPVSSMVTRRSPRLAVNSKADLVVEEAVTELPKSKKVKRAPKENGKAKEVGNEGEEIDAASKKLSKDAKNRTVVIEFCK

Query:  QCQSFKKRAIQVQSGLENGVSGITVLLNPNKPRKGCFEIRSDDGEKFISLLDMKRPFTRMKELNMEEVISDIIEKIKG
        QCQSFKKRAI+VQ+GLE GV GITVLLNP+KPR+GCFEIRS+DGEKFISLLDMKRPFTRMKEL+MEEVISDIIEKIKG
Subjt:  QCQSFKKRAIQVQSGLENGVSGITVLLNPNKPRKGCFEIRSDDGEKFISLLDMKRPFTRMKELNMEEVISDIIEKIKG

XP_023546291.1 selenoprotein H-like [Cucurbita pepo subsp. pepo]

7.6e-86

97.75

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Query:  MAPRKRSKNQEDEPAAAEEKPAPVSSMVTRRSPRLAVNSKADLVVEEAVTELPKSKKVKRAPKENGKAKEVGNEGEEIDAASKKLSKDAKNRTVVIEFCK
        MAPRKRSKNQE E  AAEEKPAPVSSMVTRRSPRLAVNSKADLVVEEAVTELPKSKKVKRAPKENGKAKEVGNEGEEIDAASKKLSKDAKNRTVVIEFCK
Subjt:  MAPRKRSKNQEDEPAAAEEKPAPVSSMVTRRSPRLAVNSKADLVVEEAVTELPKSKKVKRAPKENGKAKEVGNEGEEIDAASKKLSKDAKNRTVVIEFCK

Query:  QCQSFKKRAIQVQSGLENGVSGITVLLNPNKPRKGCFEIRSDDGEKFISLLDMKRPFTRMKELNMEEVISDIIEKIKG
        QCQSFKKRAIQVQSGLENGVSGITVLLNPNKPRKGCFEIRSDDGEKFISLLDMKRPFTRMKELNMEEVISD+IEKIKG
Subjt:  QCQSFKKRAIQVQSGLENGVSGITVLLNPNKPRKGCFEIRSDDGEKFISLLDMKRPFTRMKELNMEEVISDIIEKIKG

XP_038886764.1 selenoprotein H [Benincasa hispida]

3.8e-69

82.58

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Query:  MAPRKRSKNQEDEPAAAEEKPAPVSSMVTRRSPRLAVNSKADLVVEEAVTELPKSKKVKRAPKENGKAKEVGNEGEEIDAASKKLSKDAKNRTVVIEFCK
        MAPRKRSKNQEDEPAA  EK AP SS VTR S RLA NSKAD  V+EAVTE  KSKK KRAPKENGK KEV NEG E+DAA +KL KD KNRTVVIE CK
Subjt:  MAPRKRSKNQEDEPAAAEEKPAPVSSMVTRRSPRLAVNSKADLVVEEAVTELPKSKKVKRAPKENGKAKEVGNEGEEIDAASKKLSKDAKNRTVVIEFCK

Query:  QCQSFKKRAIQVQSGLENGVSGITVLLNPNKPRKGCFEIRSDDGEKFISLLDMKRPFTRMKELNMEEVISDIIEKIKG
        QCQSFKKRAIQVQ+GLENGV GITV+LNP+ PR+GCFEIRS+DGEKFISLLDMKRPFTRMKEL+MEEVISDIIEKIKG
Subjt:  QCQSFKKRAIQVQSGLENGVSGITVLLNPNKPRKGCFEIRSDDGEKFISLLDMKRPFTRMKELNMEEVISDIIEKIKG

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LPC9 Uncharacterized protein

4.4e-63

76.4

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Query:  MAPRKRSKNQEDEPAAAEEKPAPVSSMVTRRSPRLAVNSKADLVVEEAVTELPKSKKVKRAPKENGKAKEVGNEGEEIDAASKKLSKDAKNRTVVIEFCK
        MAPRKR+KNQE++     EKPAP +S +TR S RLA NSKADL     VTELPKSKK KRAPKENGK +EV N+  ++D    KL KDAK+RTVVIE CK
Subjt:  MAPRKRSKNQEDEPAAAEEKPAPVSSMVTRRSPRLAVNSKADLVVEEAVTELPKSKKVKRAPKENGKAKEVGNEGEEIDAASKKLSKDAKNRTVVIEFCK

Query:  QCQSFKKRAIQVQSGLENGVSGITVLLNPNKPRKGCFEIRSDDGEKFISLLDMKRPFTRMKELNMEEVISDIIEKIKG
        QCQSFKKRAIQVQ+GLENGV GITVLLNP+KPR+GCFEIRS+DGEKFISLLDMKRPFTRMKELNM+EVISDIIEKIKG
Subjt:  QCQSFKKRAIQVQSGLENGVSGITVLLNPNKPRKGCFEIRSDDGEKFISLLDMKRPFTRMKELNMEEVISDIIEKIKG

A0A1S3BBW1 selenoprotein H

2.6e-63

76.97

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Query:  MAPRKRSKNQEDEPAAAEEKPAPVSSMVTRRSPRLAVNSKADLVVEEAVTELPKSKKVKRAPKENGKAKEVGNEGEEIDAASKKLSKDAKNRTVVIEFCK
        MAPRKRSKNQE+E  +A EKPAP +S VTR S RLA NSKADL     VTELPKSKK KRAPKENGK +EV N+  ++D   +K  KDAK+RTVVIE CK
Subjt:  MAPRKRSKNQEDEPAAAEEKPAPVSSMVTRRSPRLAVNSKADLVVEEAVTELPKSKKVKRAPKENGKAKEVGNEGEEIDAASKKLSKDAKNRTVVIEFCK

Query:  QCQSFKKRAIQVQSGLENGVSGITVLLNPNKPRKGCFEIRSDDGEKFISLLDMKRPFTRMKELNMEEVISDIIEKIKG
        QCQSFKKRAIQVQ+GLENGV GITVLLNP+KPR+GCFEIRS+DG+KFISLLDMKRPFTRMKEL+M+EVISDIIEKIKG
Subjt:  QCQSFKKRAIQVQSGLENGVSGITVLLNPNKPRKGCFEIRSDDGEKFISLLDMKRPFTRMKELNMEEVISDIIEKIKG

A0A6J1GHF7 selenoprotein H-like isoform X1

7.8e-68

79.78

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Query:  MAPRKRSKNQEDEPAAAEEKPAPVSSMVTRRSPRLAVNSKADLVVEEAVTELPKSKKVKRAPKENGKAKEVGNEGEEIDAASKKLSKDAKNRTVVIEFCK
        MAP+KRSK QEDE A A  KP P SS VTRRSPRLA NSKADL VEE V +LPK KK KR PKENGKA+EV NEGE++DAAS+KL  +AKNR VVIE CK
Subjt:  MAPRKRSKNQEDEPAAAEEKPAPVSSMVTRRSPRLAVNSKADLVVEEAVTELPKSKKVKRAPKENGKAKEVGNEGEEIDAASKKLSKDAKNRTVVIEFCK

Query:  QCQSFKKRAIQVQSGLENGVSGITVLLNPNKPRKGCFEIRSDDGEKFISLLDMKRPFTRMKELNMEEVISDIIEKIKG
        QCQSFKKRA++VQ+GLE GV GITVLLNP+KPR+GCFEIRS+DGEKFISLLDMKRPFTRMKEL+MEEVISDIIEKIKG
Subjt:  QCQSFKKRAIQVQSGLENGVSGITVLLNPNKPRKGCFEIRSDDGEKFISLLDMKRPFTRMKELNMEEVISDIIEKIKG

A0A6J1K9R2 selenoprotein H-like

2.2e-86

98.32

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Query:  MAPRKRSKNQEDEP-AAAEEKPAPVSSMVTRRSPRLAVNSKADLVVEEAVTELPKSKKVKRAPKENGKAKEVGNEGEEIDAASKKLSKDAKNRTVVIEFC
        MAPRKRSKNQED+P AAAEEKPAPVSSMVTRRSPRLAVNS ADLVVEEAVTELPKSKKVKRAPKENGKAKEVGNEGEEIDAASKKLSKDAKNRTVVIEFC
Subjt:  MAPRKRSKNQEDEP-AAAEEKPAPVSSMVTRRSPRLAVNSKADLVVEEAVTELPKSKKVKRAPKENGKAKEVGNEGEEIDAASKKLSKDAKNRTVVIEFC

Query:  KQCQSFKKRAIQVQSGLENGVSGITVLLNPNKPRKGCFEIRSDDGEKFISLLDMKRPFTRMKELNMEEVISDIIEKIKG
        KQCQSFKKRAIQVQSGLENGVSGITVLLNPNKPRKGCFEIRSDDGEKFISLLDMKRPFTRMKELNMEEVISDIIEKIKG
Subjt:  KQCQSFKKRAIQVQSGLENGVSGITVLLNPNKPRKGCFEIRSDDGEKFISLLDMKRPFTRMKELNMEEVISDIIEKIKG

A0A6J1KP64 selenoprotein H-like isoform X1

2.9e-67

79.78

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Query:  MAPRKRSKNQEDEPAAAEEKPAPVSSMVTRRSPRLAVNSKADLVVEEAVTELPKSKKVKRAPKENGKAKEVGNEGEEIDAASKKLSKDAKNRTVVIEFCK
        MAP+KRSK QEDE AAA  KP PVSS VTRRSPRLA NSKADL VEE V +LPK KK KRAPKEN KA+EV NEGE++DAAS+KL  +AKNR VVIE CK
Subjt:  MAPRKRSKNQEDEPAAAEEKPAPVSSMVTRRSPRLAVNSKADLVVEEAVTELPKSKKVKRAPKENGKAKEVGNEGEEIDAASKKLSKDAKNRTVVIEFCK

Query:  QCQSFKKRAIQVQSGLENGVSGITVLLNPNKPRKGCFEIRSDDGEKFISLLDMKRPFTRMKELNMEEVISDIIEKIKG
        QCQSFKKRA++VQ+GLE GV GITVLLNP+K R+GCFEIRS+DGEKFISLLDMKRPFT+MKEL+MEEVISDIIEKIKG
Subjt:  QCQSFKKRAIQVQSGLENGVSGITVLLNPNKPRKGCFEIRSDDGEKFISLLDMKRPFTRMKELNMEEVISDIIEKIKG

SwissProt top hits

e value

%identity

Alignment

Q3UQA7 Selenoprotein H

4.5e-04

30.43

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Query:  KLSKDAKNRTVVIEFCKQCQSFKKRAIQVQSGLENGVSGITVLLNPNKPRKGCFEI---RSDDGEKFISLLDMKRPFTRMKELNMEEVISDI
        K  K A+  TVVIE C   + + + A  +   L+     + V +NP+KPR+G FE+   RSD+    +     K P  ++K    +EV+ ++
Subjt:  KLSKDAKNRTVVIEFCKQCQSFKKRAIQVQSGLENGVSGITVLLNPNKPRKGCFEI---RSDDGEKFISLLDMKRPFTRMKELNMEEVISDI

Arabidopsis top hits

e value

%identity

Alignment

AT2G24440.1 selenium binding

2.3e-32

55.15

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Query:  EEAVTELPKSKKV----KRAPKENGKAKEVGNEGEEIDAASKKLSKDAKNRTVVIEFCKQCQSFKKRAIQVQSGLENGVSGITVLLNPNKPRKGCFEIRS
        E+   +  K+K V    K+  KE    K    E E+ DAA K+   D+  + +VIE CKQC+SFK+RA +V+ GLE  V GI V +NP+KPR+GCFEIR 
Subjt:  EEAVTELPKSKKV----KRAPKENGKAKEVGNEGEEIDAASKKLSKDAKNRTVVIEFCKQCQSFKKRAIQVQSGLENGVSGITVLLNPNKPRKGCFEIRS

Query:  DDGEKFISLLDMKRPFTRMKELNMEEVISDIIEKIK
        + GE FISLL MKRPFT MKELNMEEVI+DI+EKIK
Subjt:  DDGEKFISLLDMKRPFTRMKELNMEEVISDIIEKIK

AT4G31360.1 selenium binding

3.5e-28

42.49

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Query:  PRKRSKNQEDEPAAAEEKPAPVSSMVTRRSPRLAVNSKADLVVEE--------AVTELPKSKKVKRAPKENGKAKEVGNEGEEI----DAASKKLSK---
        P K+SK      A  EEK  P++++ + R  R +++S+     ++        A     K  K K +  E G+AK+ G + EE+    +A  +++ K   
Subjt:  PRKRSKNQEDEPAAAEEKPAPVSSMVTRRSPRLAVNSKADLVVEE--------AVTELPKSKKVKRAPKENGKAKEVGNEGEEI----DAASKKLSK---

Query:  ---DAKNRTVVIEFCKQCQSFKKRAIQVQSGLENGVSGITVLLNPNKPRKGCFEIRSDDGEKFISLLDMKRPFTRMKELNMEEVISDIIEKIK
           D     +VIE CKQC +FK RAIQV+  LE  V G+TV LNP KPR+GCFEIR + G+ FISLL+MKRPF  MK L+MEEVI DII+K+K
Subjt:  ---DAKNRTVVIEFCKQCQSFKKRAIQVQSGLENGVSGITVLLNPNKPRKGCFEIRSDDGEKFISLLDMKRPFTRMKELNMEEVISDIIEKIK

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGCGCCGAGGAAGCGAAGCAAGAATCAAGAAGACGAGCCGGCGGCGGCGGAGGAGAAGCCGGCCCCGGTGTCGTCGATGGTGACTCGGAGATCGCCCCGGCTGGCGGT
GAACTCCAAGGCTGATTTGGTGGTGGAAGAGGCTGTGACGGAGTTGCCGAAGAGTAAGAAGGTGAAACGTGCTCCGAAGGAGAATGGAAAGGCGAAGGAGGTTGGAAATG
AGGGGGAGGAAATTGATGCTGCTTCGAAGAAACTAAGCAAGGATGCGAAGAACAGAACGGTTGTGATTGAATTTTGCAAACAGTGCCAATCATTCAAGAAAAGGGCCATC
CAGGTGCAAAGTGGTCTAGAGAATGGTGTTTCTGGAATTACTGTGCTGCTCAATCCTAATAAGCCAAGAAAGGGTTGCTTTGAAATTCGGAGTGATGATGGCGAGAAGTT
TATCAGTCTTCTGGATATGAAACGACCATTTACTCGTATGAAGGAGCTGAACATGGAGGAAGTGATTTCAGATATCATTGAGAAGATAAAAGGATGA

mRNA sequence

Show/hide mRNA sequence

TCCAGAGAAGAAACCAAGTGGAACTGCGTGGACGTCGTACGACCACCCAGTCGACGGCCACGATCCGTTCTCACAGTTCCAATCCATCCCCACGGTCTCTTCAAAATCCC
ACCGTCGGTTCCAAAGCGCGGGAAAAAGACCCATAGCCTCTGTGTATCACTGCAAACTAACGGTCACGGACATATCTCTCAGTCGAGGTCGATCCGGAAGAAGTCGATAA
GGTTACTTTCTTCCTCAAAGTAGCTCTGTGTTTTTCTTTCTAGGGTTTCAGGTCTTCTTTCATGGCGCCGAGGAAGCGAAGCAAGAATCAAGAAGACGAGCCGGCGGCGG
CGGAGGAGAAGCCGGCCCCGGTGTCGTCGATGGTGACTCGGAGATCGCCCCGGCTGGCGGTGAACTCCAAGGCTGATTTGGTGGTGGAAGAGGCTGTGACGGAGTTGCCG
AAGAGTAAGAAGGTGAAACGTGCTCCGAAGGAGAATGGAAAGGCGAAGGAGGTTGGAAATGAGGGGGAGGAAATTGATGCTGCTTCGAAGAAACTAAGCAAGGATGCGAA
GAACAGAACGGTTGTGATTGAATTTTGCAAACAGTGCCAATCATTCAAGAAAAGGGCCATCCAGGTGCAAAGTGGTCTAGAGAATGGTGTTTCTGGAATTACTGTGCTGC
TCAATCCTAATAAGCCAAGAAAGGGTTGCTTTGAAATTCGGAGTGATGATGGCGAGAAGTTTATCAGTCTTCTGGATATGAAACGACCATTTACTCGTATGAAGGAGCTG
AACATGGAGGAAGTGATTTCAGATATCATTGAGAAGATAAAAGGATGATGAAGAAAGCCTGTGATGTAAAATTGTCTTTTAGGATGCCATGGTTTTTTGTGGTGGTTTGG
AAGCTAATCAACCAGAGTAGCTTTGATGGTGGAAACTTAGGTTATGCTCATTGCCAATGCCAATGTTGTTGCCTCCTCACTTGGCATAATTGCAATGGTAAAACCATCAG
GTTTGAACAAACAGGGTGGATTATTTTTTGTTTAAGAATCATTTGTCTTTGAAGAAGGTTGTCCTTTCGATTGGTAGTGGAAGAAGCATAAAACTAGGGGAGAGATTCTA
TCGGGACAGTTGTAGCAGCCCAAGTCTACTAATAGTAGATATTGTCTTCTTCGGA

Protein sequence

Show/hide protein sequence

MAPRKRSKNQEDEPAAAEEKPAPVSSMVTRRSPRLAVNSKADLVVEEAVTELPKSKKVKRAPKENGKAKEVGNEGEEIDAASKKLSKDAKNRTVVIEFCKQCQSFKKRAI
QVQSGLENGVSGITVLLNPNKPRKGCFEIRSDDGEKFISLLDMKRPFTRMKELNMEEVISDIIEKIKG

Carg08321 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome