CuGenDBv2

Gene ID	Carg08333
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	psbP domain-containing protein 5, chloroplastic
Genome location	Carg_Chr05:3446595..3448474
RNA-Seq Expression	Carg08333
Synteny	Carg08333
Gene Ontology terms	GO:0015979 - photosynthesis (biological process) GO:0009507 - chloroplast (cellular component) GO:0009654 - photosystem II oxygen evolving complex (cellular component) GO:0019898 - extrinsic component of membrane (cellular component) GO:0005509 - calcium ion binding (molecular function)
InterPro domains	IPR002683 - PsbP, C-terminal IPR016123 - Mog1/PsbP, alpha/beta/alpha sandwich

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7029769.1 PsbP domain-containing protein 5, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]

6.8e-124

100

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Query:  MSLNCMIHNSLSFQGWNQENPNVILRLLHCLVRLRNIVCSLSNLNYLDFLHINFIGFAHVVADARLRIVSERVDFIDNLIISVTIGPPNSMYIKSKDKST
        MSLNCMIHNSLSFQGWNQENPNVILRLLHCLVRLRNIVCSLSNLNYLDFLHINFIGFAHVVADARLRIVSERVDFIDNLIISVTIGPPNSMYIKSKDKST
Subjt:  MSLNCMIHNSLSFQGWNQENPNVILRLLHCLVRLRNIVCSLSNLNYLDFLHINFIGFAHVVADARLRIVSERVDFIDNLIISVTIGPPNSMYIKSKDKST

Query:  WTAKDVADSVLSDKSALRVTSSQRLAESSVLDTQSSNIDGEPYWYYEYLVRKSPTKIVGESNIYRHYVASTAERDGFLYSINASTLGAQWNSMGPFLQQT
        WTAKDVADSVLSDKSALRVTSSQRLAESSVLDTQSSNIDGEPYWYYEYLVRKSPTKIVGESNIYRHYVASTAERDGFLYSINASTLGAQWNSMGPFLQQT
Subjt:  WTAKDVADSVLSDKSALRVTSSQRLAESSVLDTQSSNIDGEPYWYYEYLVRKSPTKIVGESNIYRHYVASTAERDGFLYSINASTLGAQWNSMGPFLQQT

Query:  VESFRLLPPTEDYVPPYKDPWRFW
        VESFRLLPPTEDYVPPYKDPWRFW
Subjt:  VESFRLLPPTEDYVPPYKDPWRFW

XP_022929567.1 psbP domain-containing protein 5, chloroplastic [Cucurbita moschata]

2.1e-85

99.38

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Query:  DARLRIVSERVDFIDNLIISVTIGPPNSMYIKSKDKSTWTAKDVADSVLSDKSALRVTSSQRLAESSVLDTQSSNIDGEPYWYYEYLVRKSPTKIVGESN
        DARLRIVSERVDFIDNLIISVTIGPPNSMYIKSKDKSTWTAKDVADSVLSDKSALRVTSSQRLAESSVLDT SSNIDGEPYWYYEYLVRKSPTKIVGESN
Subjt:  DARLRIVSERVDFIDNLIISVTIGPPNSMYIKSKDKSTWTAKDVADSVLSDKSALRVTSSQRLAESSVLDTQSSNIDGEPYWYYEYLVRKSPTKIVGESN

Query:  IYRHYVASTAERDGFLYSINASTLGAQWNSMGPFLQQTVESFRLLPPTEDYVPPYKDPWRFW
        IYRHYVASTAERDGFLYSINASTLGAQWNSMGPFLQQTVESFRLLPPTEDYVPPYKDPWRFW
Subjt:  IYRHYVASTAERDGFLYSINASTLGAQWNSMGPFLQQTVESFRLLPPTEDYVPPYKDPWRFW

XP_022997451.1 psbP domain-containing protein 5, chloroplastic [Cucurbita maxima]

6.2e-85

98.77

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Query:  DARLRIVSERVDFIDNLIISVTIGPPNSMYIKSKDKSTWTAKDVADSVLSDKSALRVTSSQRLAESSVLDTQSSNIDGEPYWYYEYLVRKSPTKIVGESN
        DARLRIVSERVDFIDNLIISVTIGPPNSMYIKSKDKSTWTAKDVADSVLSDKSALRVTSSQRLAESSVLDT SSNIDGEPYWYYEYLVRKSPTKIVGESN
Subjt:  DARLRIVSERVDFIDNLIISVTIGPPNSMYIKSKDKSTWTAKDVADSVLSDKSALRVTSSQRLAESSVLDTQSSNIDGEPYWYYEYLVRKSPTKIVGESN

Query:  IYRHYVASTAERDGFLYSINASTLGAQWNSMGPFLQQTVESFRLLPPTEDYVPPYKDPWRFW
        IYRHYVASTAERDGFLYSINASTLGAQWNSMGPFLQ+TVESFRLLPPTEDYVPPYKDPWRFW
Subjt:  IYRHYVASTAERDGFLYSINASTLGAQWNSMGPFLQQTVESFRLLPPTEDYVPPYKDPWRFW

XP_023545350.1 psbP domain-containing protein 5, chloroplastic [Cucurbita pepo subsp. pepo]

8.1e-85

98.15

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Query:  DARLRIVSERVDFIDNLIISVTIGPPNSMYIKSKDKSTWTAKDVADSVLSDKSALRVTSSQRLAESSVLDTQSSNIDGEPYWYYEYLVRKSPTKIVGESN
        DARLRIVSERVDF+DNLIISVTIGPPNSMYIKSKDKSTWTAKDVADSVLSDKSALRVTSSQRLAESSVLDT SSNIDGEPYWYYEYLVRKSPTKIVGESN
Subjt:  DARLRIVSERVDFIDNLIISVTIGPPNSMYIKSKDKSTWTAKDVADSVLSDKSALRVTSSQRLAESSVLDTQSSNIDGEPYWYYEYLVRKSPTKIVGESN

Query:  IYRHYVASTAERDGFLYSINASTLGAQWNSMGPFLQQTVESFRLLPPTEDYVPPYKDPWRFW
        IYRHYVASTAERDGFLYSINASTLGAQWNSMGPFLQ+TVESFRLLPPTEDYVPPYKDPWRFW
Subjt:  IYRHYVASTAERDGFLYSINASTLGAQWNSMGPFLQQTVESFRLLPPTEDYVPPYKDPWRFW

XP_038884128.1 psbP domain-containing protein 5, chloroplastic [Benincasa hispida]

6.9e-84

97.53

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Query:  DARLRIVSERVDFIDNLIISVTIGPPNSMYIKSKDKSTWTAKDVADSVLSDKSALRVTSSQRLAESSVLDTQSSNIDGEPYWYYEYLVRKSPTKIVGESN
        DARLRIVSERVDFIDNLIISVTIGPPNSMYIKSKDKSTW AKDVADSVLSDKSALRVTSSQRLAESSVLDT SSNIDGEPYWYYEYLVRKSPTKIVGESN
Subjt:  DARLRIVSERVDFIDNLIISVTIGPPNSMYIKSKDKSTWTAKDVADSVLSDKSALRVTSSQRLAESSVLDTQSSNIDGEPYWYYEYLVRKSPTKIVGESN

Query:  IYRHYVASTAERDGFLYSINASTLGAQWNSMGPFLQQTVESFRLLPPTEDYVPPYKDPWRFW
        IYRHYVASTAERDGFLYSINASTLGAQWN MGPFLQ+TVESFRLLPPTEDYVPPYKDPWRFW
Subjt:  IYRHYVASTAERDGFLYSINASTLGAQWNSMGPFLQQTVESFRLLPPTEDYVPPYKDPWRFW

TrEMBL top hits

e value

%identity

Alignment

A0A1S4DWE4 psbP domain-containing protein 5, chloroplastic isoform X1

2.8e-83

95.68

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Query:  DARLRIVSERVDFIDNLIISVTIGPPNSMYIKSKDKSTWTAKDVADSVLSDKSALRVTSSQRLAESSVLDTQSSNIDGEPYWYYEYLVRKSPTKIVGESN
        DARLRIVSERVDFIDNLIISVTIGPPNS+YIKSKDKSTW AKDVADSVLSDKSALRVTSSQR+AESSVLDT SSNIDGEPYWYYEYLVRKSPTKIVGESN
Subjt:  DARLRIVSERVDFIDNLIISVTIGPPNSMYIKSKDKSTWTAKDVADSVLSDKSALRVTSSQRLAESSVLDTQSSNIDGEPYWYYEYLVRKSPTKIVGESN

Query:  IYRHYVASTAERDGFLYSINASTLGAQWNSMGPFLQQTVESFRLLPPTEDYVPPYKDPWRFW
        IYRHYVASTAERDGFLY+INASTLGAQWN+MGPFLQ+TVESFRLLPPTEDYVPPYKDPWRFW
Subjt:  IYRHYVASTAERDGFLYSINASTLGAQWNSMGPFLQQTVESFRLLPPTEDYVPPYKDPWRFW

A0A5A7VF72 PsbP domain-containing protein 5

2.8e-83

95.68

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Query:  DARLRIVSERVDFIDNLIISVTIGPPNSMYIKSKDKSTWTAKDVADSVLSDKSALRVTSSQRLAESSVLDTQSSNIDGEPYWYYEYLVRKSPTKIVGESN
        DARLRIVSERVDFIDNLIISVTIGPPNS+YIKSKDKSTW AKDVADSVLSDKSALRVTSSQR+AESSVLDT SSNIDGEPYWYYEYLVRKSPTKIVGESN
Subjt:  DARLRIVSERVDFIDNLIISVTIGPPNSMYIKSKDKSTWTAKDVADSVLSDKSALRVTSSQRLAESSVLDTQSSNIDGEPYWYYEYLVRKSPTKIVGESN

Query:  IYRHYVASTAERDGFLYSINASTLGAQWNSMGPFLQQTVESFRLLPPTEDYVPPYKDPWRFW
        IYRHYVASTAERDGFLY+INASTLGAQWN+MGPFLQ+TVESFRLLPPTEDYVPPYKDPWRFW
Subjt:  IYRHYVASTAERDGFLYSINASTLGAQWNSMGPFLQQTVESFRLLPPTEDYVPPYKDPWRFW

A0A6J1BPK2 psbP domain-containing protein 5, chloroplastic

1.4e-82

95.06

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Query:  DARLRIVSERVDFIDNLIISVTIGPPNSMYIKSKDKSTWTAKDVADSVLSDKSALRVTSSQRLAESSVLDTQSSNIDGEPYWYYEYLVRKSPTKIVGESN
        DARLRIVSERVDFIDNL+ISVTIGPPNSM+IKSKDKSTW+AKDVADSVLSDKSALRVTSSQRLAESSVLDT SSNIDGEPYWYYEYLVRKSPTKIVGESN
Subjt:  DARLRIVSERVDFIDNLIISVTIGPPNSMYIKSKDKSTWTAKDVADSVLSDKSALRVTSSQRLAESSVLDTQSSNIDGEPYWYYEYLVRKSPTKIVGESN

Query:  IYRHYVASTAERDGFLYSINASTLGAQWNSMGPFLQQTVESFRLLPPTEDYVPPYKDPWRFW
        IYRHYVASTAERDGFLYSI+ASTLGAQWN+MGPFLQ+ VESFRLLPPTEDYVPPYKDPWRFW
Subjt:  IYRHYVASTAERDGFLYSINASTLGAQWNSMGPFLQQTVESFRLLPPTEDYVPPYKDPWRFW

A0A6J1EN40 psbP domain-containing protein 5, chloroplastic

1.0e-85

99.38

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Query:  DARLRIVSERVDFIDNLIISVTIGPPNSMYIKSKDKSTWTAKDVADSVLSDKSALRVTSSQRLAESSVLDTQSSNIDGEPYWYYEYLVRKSPTKIVGESN
        DARLRIVSERVDFIDNLIISVTIGPPNSMYIKSKDKSTWTAKDVADSVLSDKSALRVTSSQRLAESSVLDT SSNIDGEPYWYYEYLVRKSPTKIVGESN
Subjt:  DARLRIVSERVDFIDNLIISVTIGPPNSMYIKSKDKSTWTAKDVADSVLSDKSALRVTSSQRLAESSVLDTQSSNIDGEPYWYYEYLVRKSPTKIVGESN

Query:  IYRHYVASTAERDGFLYSINASTLGAQWNSMGPFLQQTVESFRLLPPTEDYVPPYKDPWRFW
        IYRHYVASTAERDGFLYSINASTLGAQWNSMGPFLQQTVESFRLLPPTEDYVPPYKDPWRFW
Subjt:  IYRHYVASTAERDGFLYSINASTLGAQWNSMGPFLQQTVESFRLLPPTEDYVPPYKDPWRFW

A0A6J1K7I1 psbP domain-containing protein 5, chloroplastic

3.0e-85

98.77

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Query:  DARLRIVSERVDFIDNLIISVTIGPPNSMYIKSKDKSTWTAKDVADSVLSDKSALRVTSSQRLAESSVLDTQSSNIDGEPYWYYEYLVRKSPTKIVGESN
        DARLRIVSERVDFIDNLIISVTIGPPNSMYIKSKDKSTWTAKDVADSVLSDKSALRVTSSQRLAESSVLDT SSNIDGEPYWYYEYLVRKSPTKIVGESN
Subjt:  DARLRIVSERVDFIDNLIISVTIGPPNSMYIKSKDKSTWTAKDVADSVLSDKSALRVTSSQRLAESSVLDTQSSNIDGEPYWYYEYLVRKSPTKIVGESN

Query:  IYRHYVASTAERDGFLYSINASTLGAQWNSMGPFLQQTVESFRLLPPTEDYVPPYKDPWRFW
        IYRHYVASTAERDGFLYSINASTLGAQWNSMGPFLQ+TVESFRLLPPTEDYVPPYKDPWRFW
Subjt:  IYRHYVASTAERDGFLYSINASTLGAQWNSMGPFLQQTVESFRLLPPTEDYVPPYKDPWRFW

SwissProt top hits

e value

%identity

Alignment

P82715 PsbP domain-containing protein 5, chloroplastic

1.4e-68

77.16

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Query:  DARLRIVSERVDFIDNLIISVTIGPPNSMYIKSKDKSTWTAKDVADSVLSDKSALRVTSSQRLAESSVLDTQSSNIDGEPYWYYEYLVRKSPTKIVGESN
        DARLRIVSERVD  DNL+IS++IGPPNS  + SK+K TW+AK+VADSVLSDKSALRVTSSQRL ESSVLD  +S+IDGEPYWYYEYLVRKSPTKI   S 
Subjt:  DARLRIVSERVDFIDNLIISVTIGPPNSMYIKSKDKSTWTAKDVADSVLSDKSALRVTSSQRLAESSVLDTQSSNIDGEPYWYYEYLVRKSPTKIVGESN

Query:  IYRHYVASTAERDGFLYSINASTLGAQWNSMGPFLQQTVESFRLLPPTEDYVPPYKDPWRFW
        +YRHY++STAERDG+LY+INASTLG QW+ MGP L++ V SFRLLPPT+ YVPPYKDPWRFW
Subjt:  IYRHYVASTAERDGFLYSINASTLGAQWNSMGPFLQQTVESFRLLPPTEDYVPPYKDPWRFW

Arabidopsis top hits

e value

%identity

Alignment

AT5G11450.1 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein

1.0e-69

77.16

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Query:  DARLRIVSERVDFIDNLIISVTIGPPNSMYIKSKDKSTWTAKDVADSVLSDKSALRVTSSQRLAESSVLDTQSSNIDGEPYWYYEYLVRKSPTKIVGESN
        DARLRIVSERVD  DNL+IS++IGPPNS  + SK+K TW+AK+VADSVLSDKSALRVTSSQRL ESSVLD  +S+IDGEPYWYYEYLVRKSPTKI   S 
Subjt:  DARLRIVSERVDFIDNLIISVTIGPPNSMYIKSKDKSTWTAKDVADSVLSDKSALRVTSSQRLAESSVLDTQSSNIDGEPYWYYEYLVRKSPTKIVGESN

Query:  IYRHYVASTAERDGFLYSINASTLGAQWNSMGPFLQQTVESFRLLPPTEDYVPPYKDPWRFW
        +YRHY++STAERDG+LY+INASTLG QW+ MGP L++ V SFRLLPPT+ YVPPYKDPWRFW
Subjt:  IYRHYVASTAERDGFLYSINASTLGAQWNSMGPFLQQTVESFRLLPPTEDYVPPYKDPWRFW

Sequences

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CDS sequence

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mRNA sequence

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ATGTCCTTAAATTGTATGATACATAATTCCTTATCTTTTCAAGGGTGGAATCAAGAAAACCCGAACGTTATTCTTCGGCTGCTCCACTGTCTCGTAAGATTAAGAAACAT
AGTTTGTTCTTTGAGCAACTTGAATTATTTAGATTTTCTTCATATTAACTTCATTGGGTTTGCACACGTCGTAGCTGATGCACGATTGAGGATTGTCTCTGAGCGAGTTG
ATTTCATCGACAACCTAATCATATCGGTTACGATAGGCCCTCCAAATTCCATGTATATAAAATCAAAGGACAAGAGTACTTGGACAGCAAAAGATGTTGCAGACTCTGTT
TTATCCGACAAATCTGCATTGCGGGTCACTTCGAGTCAGCGCCTGGCTGAGAGTTCAGTCCTAGATACTCAGTCAAGTAATATTGATGGTGAGCCATACTGGTATTATGA
GTACCTTGTTCGAAAGTCGCCAACAAAAATCGTCGGAGAATCCAACATTTACAGGCATTATGTTGCATCGACTGCAGAACGAGATGGCTTTCTGTATTCTATCAATGCTT
CAACTCTTGGCGCGCAATGGAACTCTATGGGACCTTTTCTGCAGCAAACCGTCGAGTCATTTCGACTTCTTCCTCCCACGGAAGACTATGTTCCTCCATACAAGGATCCA
TGGAGATTTTGGTGACATTTTTTTTTGTATCCACACTGCATTTACAAGCATTTTTGTATCGTATTCTTTTGTCGAGTGAGTTCTAGTTCATTTTCGAGATCTAGGCGTAG
CTACAGATTTTGAAGGGTCAGCTTTAGACAAAGTTGATCTCTCCATGATCAAACTATGTTGTGTATTTCATTGCCACTTCCAAGTCCAAAAACCTTCAATAGCATAAAAC
TTTGAAAATCATGCTCATGGCCATTACACAGTAGAAGAAGAAACTTGAACCTGATTGAACTTGAAAAGAATATGAAAAGATCCGCTTGTAACTTTTATTCGATGAGCGAC
GGTCCTTCCACTCAGCACCTTCGGATCATTAAGG

Protein sequence

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MSLNCMIHNSLSFQGWNQENPNVILRLLHCLVRLRNIVCSLSNLNYLDFLHINFIGFAHVVADARLRIVSERVDFIDNLIISVTIGPPNSMYIKSKDKSTWTAKDVADSV
LSDKSALRVTSSQRLAESSVLDTQSSNIDGEPYWYYEYLVRKSPTKIVGESNIYRHYVASTAERDGFLYSINASTLGAQWNSMGPFLQQTVESFRLLPPTEDYVPPYKDP
WRFW

Carg08333 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome