CuGenDBv2

Gene ID	Carg08334
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	psbP domain-containing protein 5, chloroplastic
Genome location	Carg_Chr05:3449739..3450309
RNA-Seq Expression	Carg08334
Synteny	Carg08334
Gene Ontology terms	GO:0015979 - photosynthesis (biological process) GO:0009507 - chloroplast (cellular component) GO:0009654 - photosystem II oxygen evolving complex (cellular component) GO:0019898 - extrinsic component of membrane (cellular component) GO:0005509 - calcium ion binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6598825.1 PsbP domain-containing protein 5, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]

2.3e-54

99.15

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Query:  MALLNSSLSVSTPTNASLPNLSFFSNRPRNFPSRKIIGMYKKLSLCSTSISKSTSENVFSRRDLLLFGLSSSFVLTFPSLGSLAEEQLKAATMVDEVNAY
        MALLNSSLSVSTPTNASLPNLSFFSNRPRN PSRKIIGMYKKLSLCSTSISKSTSENVFSRRDLLLFGLSSSFVLTFPSLGSLAEEQLKAATMVDEVNAY
Subjt:  MALLNSSLSVSTPTNASLPNLSFFSNRPRNFPSRKIIGMYKKLSLCSTSISKSTSENVFSRRDLLLFGLSSSFVLTFPSLGSLAEEQLKAATMVDEVNAY

Query:  SYIYPLELPSTNFAFKW
        SYIYPLELPSTNFAFKW
Subjt:  SYIYPLELPSTNFAFKW

KAG7029770.1 PsbP domain-containing protein 5, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]

4.6e-55

100

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Query:  MALLNSSLSVSTPTNASLPNLSFFSNRPRNFPSRKIIGMYKKLSLCSTSISKSTSENVFSRRDLLLFGLSSSFVLTFPSLGSLAEEQLKAATMVDEVNAY
        MALLNSSLSVSTPTNASLPNLSFFSNRPRNFPSRKIIGMYKKLSLCSTSISKSTSENVFSRRDLLLFGLSSSFVLTFPSLGSLAEEQLKAATMVDEVNAY
Subjt:  MALLNSSLSVSTPTNASLPNLSFFSNRPRNFPSRKIIGMYKKLSLCSTSISKSTSENVFSRRDLLLFGLSSSFVLTFPSLGSLAEEQLKAATMVDEVNAY

Query:  SYIYPLELPSTNFAFKW
        SYIYPLELPSTNFAFKW
Subjt:  SYIYPLELPSTNFAFKW

XP_022929567.1 psbP domain-containing protein 5, chloroplastic [Cucurbita moschata]

2.3e-54

99.15

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Query:  MALLNSSLSVSTPTNASLPNLSFFSNRPRNFPSRKIIGMYKKLSLCSTSISKSTSENVFSRRDLLLFGLSSSFVLTFPSLGSLAEEQLKAATMVDEVNAY
        MALLNSSLSVSTPTNASLPNLSFFSNRPRN PSRKIIGMYKKLSLCSTSISKSTSENVFSRRDLLLFGLSSSFVLTFPSLGSLAEEQLKAATMVDEVNAY
Subjt:  MALLNSSLSVSTPTNASLPNLSFFSNRPRNFPSRKIIGMYKKLSLCSTSISKSTSENVFSRRDLLLFGLSSSFVLTFPSLGSLAEEQLKAATMVDEVNAY

Query:  SYIYPLELPSTNFAFKW
        SYIYPLELPSTNFAFKW
Subjt:  SYIYPLELPSTNFAFKW

XP_022997451.1 psbP domain-containing protein 5, chloroplastic [Cucurbita maxima]

2.6e-50

92.31

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Query:  MALLNSSLSVSTPTNASLPNLSFFSNRPRNFPSRKIIGMYKKLSLCSTSISKSTSENVFSRRDLLLFGLSSSFVLTFPSLGSLAEEQLKAATMVDEVNAY
        MALLNSSLS STPTNASLPNLSFF NRPR+ PSRKIIGMYKK +LCSTSISKSTS NVFSRRDLLLFGLSSSFVLTFPSLGSLAEE+LKAATMVDEVNAY
Subjt:  MALLNSSLSVSTPTNASLPNLSFFSNRPRNFPSRKIIGMYKKLSLCSTSISKSTSENVFSRRDLLLFGLSSSFVLTFPSLGSLAEEQLKAATMVDEVNAY

Query:  SYIYPLELPSTNFAFKW
        SYIYPLELPSTNF+FKW
Subjt:  SYIYPLELPSTNFAFKW

XP_023545350.1 psbP domain-containing protein 5, chloroplastic [Cucurbita pepo subsp. pepo]

6.2e-52

94.87

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Query:  MALLNSSLSVSTPTNASLPNLSFFSNRPRNFPSRKIIGMYKKLSLCSTSISKSTSENVFSRRDLLLFGLSSSFVLTFPSLGSLAEEQLKAATMVDEVNAY
        MALLNSSLSVSTPTNASLPNLSFFSNRP N PSRKIIG+YKK +LCSTSISKSTSENVFSRRDLLLFGLSSSFVLTFPSLGSLAEE+LKAATMVDEVNAY
Subjt:  MALLNSSLSVSTPTNASLPNLSFFSNRPRNFPSRKIIGMYKKLSLCSTSISKSTSENVFSRRDLLLFGLSSSFVLTFPSLGSLAEEQLKAATMVDEVNAY

Query:  SYIYPLELPSTNFAFKW
        SYIYPLELPSTNFAFKW
Subjt:  SYIYPLELPSTNFAFKW

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LM60 PsbP domain-containing protein

1.3e-42

80.34

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Query:  MALLNSSLSVSTPTNASLPNLSFFSNRPRNFPSRKIIGMYKKLSLCSTSISKSTSENVFSRRDLLLFGLSSSFVLTFPSLGSLAEEQLKAATMVDEVNAY
        MALLNSSLSVST TN SLPNL FF N+P+N P RK IGMYKK ++CSTSISK TSEN  SRRDLLLFGL+SS  L+FPSLGSLAEE+LKAATMVDE+NAY
Subjt:  MALLNSSLSVSTPTNASLPNLSFFSNRPRNFPSRKIIGMYKKLSLCSTSISKSTSENVFSRRDLLLFGLSSSFVLTFPSLGSLAEEQLKAATMVDEVNAY

Query:  SYIYPLELPSTNFAFKW
        SY YPLEL STNFAFKW
Subjt:  SYIYPLELPSTNFAFKW

A0A1S4DVK9 psbP domain-containing protein 5, chloroplastic isoform X2

2.9e-39

76.07

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Query:  MALLNSSLSVSTPTNASLPNLSFFSNRPRNFPSRKIIGMYKKLSLCSTSISKSTSENVFSRRDLLLFGLSSSFVLTFPSLGSLAEEQLKAATMVDEVNAY
        MALL SSLSVST TNASLPNL FF N+P+N P RK IGMY K +LCST ISK TSE+ F RR+LLLFGL+SS  L FPSLGSLAEE+LK+ATMVDE+NAY
Subjt:  MALLNSSLSVSTPTNASLPNLSFFSNRPRNFPSRKIIGMYKKLSLCSTSISKSTSENVFSRRDLLLFGLSSSFVLTFPSLGSLAEEQLKAATMVDEVNAY

Query:  SYIYPLELPSTNFAFKW
        SY YP+EL STNFAFKW
Subjt:  SYIYPLELPSTNFAFKW

A0A1S4DWE4 psbP domain-containing protein 5, chloroplastic isoform X1

2.9e-39

76.07

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Query:  MALLNSSLSVSTPTNASLPNLSFFSNRPRNFPSRKIIGMYKKLSLCSTSISKSTSENVFSRRDLLLFGLSSSFVLTFPSLGSLAEEQLKAATMVDEVNAY
        MALL SSLSVST TNASLPNL FF N+P+N P RK IGMY K +LCST ISK TSE+ F RR+LLLFGL+SS  L FPSLGSLAEE+LK+ATMVDE+NAY
Subjt:  MALLNSSLSVSTPTNASLPNLSFFSNRPRNFPSRKIIGMYKKLSLCSTSISKSTSENVFSRRDLLLFGLSSSFVLTFPSLGSLAEEQLKAATMVDEVNAY

Query:  SYIYPLELPSTNFAFKW
        SY YP+EL STNFAFKW
Subjt:  SYIYPLELPSTNFAFKW

A0A6J1EN40 psbP domain-containing protein 5, chloroplastic

1.1e-54

99.15

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Query:  MALLNSSLSVSTPTNASLPNLSFFSNRPRNFPSRKIIGMYKKLSLCSTSISKSTSENVFSRRDLLLFGLSSSFVLTFPSLGSLAEEQLKAATMVDEVNAY
        MALLNSSLSVSTPTNASLPNLSFFSNRPRN PSRKIIGMYKKLSLCSTSISKSTSENVFSRRDLLLFGLSSSFVLTFPSLGSLAEEQLKAATMVDEVNAY
Subjt:  MALLNSSLSVSTPTNASLPNLSFFSNRPRNFPSRKIIGMYKKLSLCSTSISKSTSENVFSRRDLLLFGLSSSFVLTFPSLGSLAEEQLKAATMVDEVNAY

Query:  SYIYPLELPSTNFAFKW
        SYIYPLELPSTNFAFKW
Subjt:  SYIYPLELPSTNFAFKW

A0A6J1K7I1 psbP domain-containing protein 5, chloroplastic

1.3e-50

92.31

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Query:  MALLNSSLSVSTPTNASLPNLSFFSNRPRNFPSRKIIGMYKKLSLCSTSISKSTSENVFSRRDLLLFGLSSSFVLTFPSLGSLAEEQLKAATMVDEVNAY
        MALLNSSLS STPTNASLPNLSFF NRPR+ PSRKIIGMYKK +LCSTSISKSTS NVFSRRDLLLFGLSSSFVLTFPSLGSLAEE+LKAATMVDEVNAY
Subjt:  MALLNSSLSVSTPTNASLPNLSFFSNRPRNFPSRKIIGMYKKLSLCSTSISKSTSENVFSRRDLLLFGLSSSFVLTFPSLGSLAEEQLKAATMVDEVNAY

Query:  SYIYPLELPSTNFAFKW
        SYIYPLELPSTNF+FKW
Subjt:  SYIYPLELPSTNFAFKW

SwissProt top hits

e value

%identity

Alignment

P82715 PsbP domain-containing protein 5, chloroplastic

5.5e-11

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Query:  PNLSFFSNRPRNFPSRKIIGMYKKLSLCSTSIS--KSTSENVFSRRDLLLFGLSSSFVLTFPSLG---------SLAEEQLKAATMVDEVNAYSYIYPLE
        PN   F  R  N  S K  G  K+L +  + +S    +SE   SRRDL+L GLSS   +  P             ++ E+LK  TMVD++NAYSY YPL+
Subjt:  PNLSFFSNRPRNFPSRKIIGMYKKLSLCSTSIS--KSTSENVFSRRDLLLFGLSSSFVLTFPSLG---------SLAEEQLKAATMVDEVNAYSYIYPLE

Query:  LPSTNFAFKW
         PS    FKW
Subjt:  LPSTNFAFKW

Arabidopsis top hits

e value

%identity

Alignment

AT5G11450.1 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein

3.9e-12

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Query:  PNLSFFSNRPRNFPSRKIIGMYKKLSLCSTSIS--KSTSENVFSRRDLLLFGLSSSFVLTFPSLG---------SLAEEQLKAATMVDEVNAYSYIYPLE
        PN   F  R  N  S K  G  K+L +  + +S    +SE   SRRDL+L GLSS   +  P             ++ E+LK  TMVD++NAYSY YPL+
Subjt:  PNLSFFSNRPRNFPSRKIIGMYKKLSLCSTSIS--KSTSENVFSRRDLLLFGLSSSFVLTFPSLG---------SLAEEQLKAATMVDEVNAYSYIYPLE

Query:  LPSTNFAFKW
         PS    FKW
Subjt:  LPSTNFAFKW

Sequences

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CDS sequence

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ATGGCGCTTCTCAATTCCTCTCTATCTGTTTCTACTCCCACCAACGCTTCTCTTCCAAATCTGTCCTTCTTCAGCAATCGACCTAGAAACTTCCCCTCTCGGAAAATAAT
TGGAATGTACAAGAAATTGAGTCTCTGTTCGACTTCAATCTCAAAATCCACCTCAGAAAATGTGTTTTCCAGAAGGGATTTGTTGCTATTTGGGCTTTCTTCTTCGTTTG
TTCTGACATTTCCATCATTAGGTTCTCTTGCGGAGGAACAGTTGAAGGCTGCTACAATGGTCGACGAAGTAAATGCTTATTCTTATATTTATCCACTGGAATTGCCGTCT
ACTAATTTCGCCTTCAAATGGTAG

mRNA sequence

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Protein sequence

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MALLNSSLSVSTPTNASLPNLSFFSNRPRNFPSRKIIGMYKKLSLCSTSISKSTSENVFSRRDLLLFGLSSSFVLTFPSLGSLAEEQLKAATMVDEVNAYSYIYPLELPS
TNFAFKW

Carg08334 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome