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Carg08337 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg08337
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description30S ribosomal protein S11, chloroplastic
Genome locationCarg_Chr05:3462197..3464470
RNA-Seq ExpressionCarg08337
SyntenyCarg08337
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7029773.1 30S ribosomal protein S11, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]6.4e-69100Show/hide
Query:  MKEPTPSTVSLRLVRLPSSVEELIDSPELLKERRNFEFGLSIAELTLDEEYDLAVAAASVVFLARWVLNHPIHSWSSTGTCGFKGPRTLFAAQTATGNAI
        MKEPTPSTVSLRLVRLPSSVEELIDSPELLKERRNFEFGLSIAELTLDEEYDLAVAAASVVFLARWVLNHPIHSWSSTGTCGFKGPRTLFAAQTATGNAI
Subjt:  MKEPTPSTVSLRLVRLPSSVEELIDSPELLKERRNFEFGLSIAELTLDEEYDLAVAAASVVFLARWVLNHPIHSWSSTGTCGFKGPRTLFAAQTATGNAI

Query:  RAKAYQEIPTWKKQAQRKKKTWGGDWFGSEIEIE
        RAKAYQEIPTWKKQAQRKKKTWGGDWFGSEIEIE
Subjt:  RAKAYQEIPTWKKQAQRKKKTWGGDWFGSEIEIE
TrEMBL top hitse value%identityAlignment
No hits found
SwissProt top hitse value%identityAlignment
A0ZZ68 30S ribosomal protein S11, chloroplastic5.2e-0580.65Show/hide
Query:  SWSSTGTCGFKGPR--TLFAAQTATGNAIRA
        SWSS GTCGFKG R  T FAAQTA GNAIRA
Subjt:  SWSSTGTCGFKGPR--TLFAAQTATGNAIRA
A4QJE8 30S ribosomal protein S11, chloroplastic3.0e-0572.97Show/hide
Query:  SWSSTGTCGFKGPR--TLFAAQTATGNAIRAKAYQEI
        SWSS GTCGFKG R  T FAAQTA GNAIRA   Q I
Subjt:  SWSSTGTCGFKGPR--TLFAAQTATGNAIRAKAYQEI
A4QJN2 30S ribosomal protein S11, chloroplastic3.0e-0572.97Show/hide
Query:  SWSSTGTCGFKGPR--TLFAAQTATGNAIRAKAYQEI
        SWSS GTCGFKG R  T FAAQTA GNAIRA   Q I
Subjt:  SWSSTGTCGFKGPR--TLFAAQTATGNAIRAKAYQEI
A4QKD8 30S ribosomal protein S11, chloroplastic5.2e-0580.65Show/hide
Query:  SWSSTGTCGFKGPR--TLFAAQTATGNAIRA
        SWSS GTCGFKG R  T FAAQTA GNAIRA
Subjt:  SWSSTGTCGFKGPR--TLFAAQTATGNAIRA
Q09ME4 30S ribosomal protein S11, chloroplastic5.2e-0574.29Show/hide
Query:  SWSSTGTCGFKGPR--TLFAAQTATGNAIRAKAYQ
        SWSS GTCGF+G R  T FAAQTA GNAIRA A Q
Subjt:  SWSSTGTCGFKGPR--TLFAAQTATGNAIRAKAYQ
Arabidopsis top hitse value%identityAlignment
ATCG00750.1 ribosomal protein S118.2e-0677.42Show/hide
Query:  SWSSTGTCGFKGPR--TLFAAQTATGNAIRA
        SWSS GTCGF+G R  T FAAQTA GNAIRA
Subjt:  SWSSTGTCGFKGPR--TLFAAQTATGNAIRA

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGGAACCTACACCGTCTACAGTCTCTCTTAGACTTGTGCGGCTACCTTCGAGTGTCGAAGAACTCATTGATTCCCCTGAACTACTAAAGGAGCGAAGAAATTTTGA
GTTCGGGCTTTCCATAGCAGAGTTGACTCTTGATGAGGAGTATGACTTAGCAGTAGCTGCTGCATCAGTGGTGTTCTTAGCCAGATGGGTTCTGAATCATCCAATTCACT
CATGGTCCTCCACTGGTACTTGTGGATTCAAAGGTCCAAGGACACTATTTGCTGCTCAAACCGCAACAGGAAATGCTATTCGGGCAAAAGCATATCAAGAGATACCCACA
TGGAAGAAACAGGCACAAAGAAAGAAAAAAACATGGGGTGGGGACTGGTTTGGGAGTGAGATTGAGATTGAATGA
mRNA sequenceShow/hide mRNA sequence
ATGAAGGAACCTACACCGTCTACAGTCTCTCTTAGACTTGTGCGGCTACCTTCGAGTGTCGAAGAACTCATTGATTCCCCTGAACTACTAAAGGAGCGAAGAAATTTTGA
GTTCGGGCTTTCCATAGCAGAGTTGACTCTTGATGAGGAGTATGACTTAGCAGTAGCTGCTGCATCAGTGGTGTTCTTAGCCAGATGGGTTCTGAATCATCCAATTCACT
CATGGTCCTCCACTGGTACTTGTGGATTCAAAGGTCCAAGGACACTATTTGCTGCTCAAACCGCAACAGGAAATGCTATTCGGGCAAAAGCATATCAAGAGATACCCACA
TGGAAGAAACAGGCACAAAGAAAGAAAAAAACATGGGGTGGGGACTGGTTTGGGAGTGAGATTGAGATTGAATGA
Protein sequenceShow/hide protein sequence
MKEPTPSTVSLRLVRLPSSVEELIDSPELLKERRNFEFGLSIAELTLDEEYDLAVAAASVVFLARWVLNHPIHSWSSTGTCGFKGPRTLFAAQTATGNAIRAKAYQEIPT
WKKQAQRKKKTWGGDWFGSEIEIE