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Carg08400 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg08400
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionRRM domain-containing protein
Genome locationCarg_Chr02:5930995..5934704
RNA-Seq ExpressionCarg08400
SyntenyCarg08400
Gene Ontology termsGO:0003723 - RNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7035645.1 putative RNA-binding protein 18, partial [Cucurbita argyrosperma subsp. argyrosperma]7.9e-82100Show/hide
Query:  KFSCSSLESSLAWAEICCEVQKNPYTFVELNLLIGSLMVMIISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKLAKENMHGKLACSRPLVVRLASEKLVI
        KFSCSSLESSLAWAEICCEVQKNPYTFVELNLLIGSLMVMIISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKLAKENMHGKLACSRPLVVRLASEKLVI
Subjt:  KFSCSSLESSLAWAEICCEVQKNPYTFVELNLLIGSLMVMIISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKLAKENMHGKLACSRPLVVRLASEKLVI

Query:  NTTNNNNTSRAAGETSKSRPSGSNYGHMSRSDKIAAIKNKLRALEGGEGERSGVKKQKQG
        NTTNNNNTSRAAGETSKSRPSGSNYGHMSRSDKIAAIKNKLRALEGGEGERSGVKKQKQG
Subjt:  NTTNNNNTSRAAGETSKSRPSGSNYGHMSRSDKIAAIKNKLRALEGGEGERSGVKKQKQG

XP_022958043.1 probable RNA-binding protein 18 isoform X1 [Cucurbita moschata]5.1e-5799.17Show/hide
Query:  IISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKLAKENMHGKLACSRPLVVRLASEKLVINTTNNNNTSRAAGETSKSRPSGSNYGHMSRSDKIAAIKNK
        IISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKLAKE+MHGKLACSRPLVVRLASEKLVINTTNNNNTSRAAGETSKSRPSGSNYGHMSRSDKIAAIKNK
Subjt:  IISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKLAKENMHGKLACSRPLVVRLASEKLVINTTNNNNTSRAAGETSKSRPSGSNYGHMSRSDKIAAIKNK

Query:  LRALEGGEGERSGVKKQKQG
        LRALEGGEGERSGVKKQKQG
Subjt:  LRALEGGEGERSGVKKQKQG

XP_022958046.1 probable RNA-binding protein 18 isoform X2 [Cucurbita moschata]5.1e-5799.17Show/hide
Query:  IISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKLAKENMHGKLACSRPLVVRLASEKLVINTTNNNNTSRAAGETSKSRPSGSNYGHMSRSDKIAAIKNK
        IISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKLAKE+MHGKLACSRPLVVRLASEKLVINTTNNNNTSRAAGETSKSRPSGSNYGHMSRSDKIAAIKNK
Subjt:  IISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKLAKENMHGKLACSRPLVVRLASEKLVINTTNNNNTSRAAGETSKSRPSGSNYGHMSRSDKIAAIKNK

Query:  LRALEGGEGERSGVKKQKQG
        LRALEGGEGERSGVKKQKQG
Subjt:  LRALEGGEGERSGVKKQKQG

XP_022958047.1 probable RNA-binding protein 18 isoform X3 [Cucurbita moschata]5.1e-5799.17Show/hide
Query:  IISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKLAKENMHGKLACSRPLVVRLASEKLVINTTNNNNTSRAAGETSKSRPSGSNYGHMSRSDKIAAIKNK
        IISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKLAKE+MHGKLACSRPLVVRLASEKLVINTTNNNNTSRAAGETSKSRPSGSNYGHMSRSDKIAAIKNK
Subjt:  IISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKLAKENMHGKLACSRPLVVRLASEKLVINTTNNNNTSRAAGETSKSRPSGSNYGHMSRSDKIAAIKNK

Query:  LRALEGGEGERSGVKKQKQG
        LRALEGGEGERSGVKKQKQG
Subjt:  LRALEGGEGERSGVKKQKQG

XP_023534515.1 probable RNA-binding protein 18 isoform X2 [Cucurbita pepo subsp. pepo]1.1e-5698.33Show/hide
Query:  IISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKLAKENMHGKLACSRPLVVRLASEKLVINTTNNNNTSRAAGETSKSRPSGSNYGHMSRSDKIAAIKNK
        IISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKLAKENMHGKLACSRPLVVRLASEKLVINTTNNNNTSR  GETSKSRPSGSNYGHMSRSDKIAAIKNK
Subjt:  IISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKLAKENMHGKLACSRPLVVRLASEKLVINTTNNNNTSRAAGETSKSRPSGSNYGHMSRSDKIAAIKNK

Query:  LRALEGGEGERSGVKKQKQG
        LRALEGGEGERSGVKKQKQG
Subjt:  LRALEGGEGERSGVKKQKQG

TrEMBL top hitse value%identityAlignment
A0A6J1H0U8 probable RNA-binding protein 18 isoform X32.5e-5799.17Show/hide
Query:  IISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKLAKENMHGKLACSRPLVVRLASEKLVINTTNNNNTSRAAGETSKSRPSGSNYGHMSRSDKIAAIKNK
        IISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKLAKE+MHGKLACSRPLVVRLASEKLVINTTNNNNTSRAAGETSKSRPSGSNYGHMSRSDKIAAIKNK
Subjt:  IISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKLAKENMHGKLACSRPLVVRLASEKLVINTTNNNNTSRAAGETSKSRPSGSNYGHMSRSDKIAAIKNK

Query:  LRALEGGEGERSGVKKQKQG
        LRALEGGEGERSGVKKQKQG
Subjt:  LRALEGGEGERSGVKKQKQG

A0A6J1H0X4 probable RNA-binding protein 18 isoform X22.5e-5799.17Show/hide
Query:  IISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKLAKENMHGKLACSRPLVVRLASEKLVINTTNNNNTSRAAGETSKSRPSGSNYGHMSRSDKIAAIKNK
        IISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKLAKE+MHGKLACSRPLVVRLASEKLVINTTNNNNTSRAAGETSKSRPSGSNYGHMSRSDKIAAIKNK
Subjt:  IISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKLAKENMHGKLACSRPLVVRLASEKLVINTTNNNNTSRAAGETSKSRPSGSNYGHMSRSDKIAAIKNK

Query:  LRALEGGEGERSGVKKQKQG
        LRALEGGEGERSGVKKQKQG
Subjt:  LRALEGGEGERSGVKKQKQG

A0A6J1H211 probable RNA-binding protein 18 isoform X12.5e-5799.17Show/hide
Query:  IISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKLAKENMHGKLACSRPLVVRLASEKLVINTTNNNNTSRAAGETSKSRPSGSNYGHMSRSDKIAAIKNK
        IISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKLAKE+MHGKLACSRPLVVRLASEKLVINTTNNNNTSRAAGETSKSRPSGSNYGHMSRSDKIAAIKNK
Subjt:  IISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKLAKENMHGKLACSRPLVVRLASEKLVINTTNNNNTSRAAGETSKSRPSGSNYGHMSRSDKIAAIKNK

Query:  LRALEGGEGERSGVKKQKQG
        LRALEGGEGERSGVKKQKQG
Subjt:  LRALEGGEGERSGVKKQKQG

A0A6J1K0K5 probable RNA-binding protein 18 isoform X13.0e-5595.9Show/hide
Query:  IISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKLAKENMHGKLACSRPLVVRLASEKLVINTT--NNNNTSRAAGETSKSRPSGSNYGHMSRSDKIAAIK
        IISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKLAKENMHGKLACSRPLVVRLASEKL+INTT  NNNNTSR AGETSKSRPSGSNYGHMSRSDKIAAIK
Subjt:  IISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKLAKENMHGKLACSRPLVVRLASEKLVINTT--NNNNTSRAAGETSKSRPSGSNYGHMSRSDKIAAIK

Query:  NKLRALEGGEGERSGVKKQKQG
        NKLRALEGGEGERSG+KKQKQG
Subjt:  NKLRALEGGEGERSGVKKQKQG

A0A6J1K5I1 probable RNA-binding protein 18 isoform X23.0e-5595.9Show/hide
Query:  IISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKLAKENMHGKLACSRPLVVRLASEKLVINTT--NNNNTSRAAGETSKSRPSGSNYGHMSRSDKIAAIK
        IISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKLAKENMHGKLACSRPLVVRLASEKL+INTT  NNNNTSR AGETSKSRPSGSNYGHMSRSDKIAAIK
Subjt:  IISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKLAKENMHGKLACSRPLVVRLASEKLVINTT--NNNNTSRAAGETSKSRPSGSNYGHMSRSDKIAAIK

Query:  NKLRALEGGEGERSGVKKQKQG
        NKLRALEGGEGERSG+KKQKQG
Subjt:  NKLRALEGGEGERSGVKKQKQG

SwissProt top hitse value%identityAlignment
Q3ZCC5 Probable RNA-binding protein 183.9e-0736.27Show/hide
Query:  DFLWHTRGPKRGEPRGFAFIEYSSKEEAKLAKENMHGKLACSRPLVVRLASEKLVINTTNNNN--TSRAAGETSKSRPSGSNYGHMSRSDKIAAIKNKLR
        DFL+H  G   G+PRG+ F+ + +K+EA+ A + ++GKLA S+ LVVR A  ++     N N+     +   +S + P+ SN   +S + KI AI+ KL+
Subjt:  DFLWHTRGPKRGEPRGFAFIEYSSKEEAKLAKENMHGKLACSRPLVVRLASEKLVINTTNNNN--TSRAAGETSKSRPSGSNYGHMSRSDKIAAIKNKLR

Query:  AL
         +
Subjt:  AL

Q5R6W3 Probable RNA-binding protein 183.9e-0736.27Show/hide
Query:  DFLWHTRGPKRGEPRGFAFIEYSSKEEAKLAKENMHGKLACSRPLVVRLASEKLVINTTNNNN--TSRAAGETSKSRPSGSNYGHMSRSDKIAAIKNKLR
        DFL+H  G   G+PRG+ F+ + +K+EA+ A + ++GKLA S+ LVVR A  ++     N N+     +   +S + P+ SN   +S + KI AI+ KL+
Subjt:  DFLWHTRGPKRGEPRGFAFIEYSSKEEAKLAKENMHGKLACSRPLVVRLASEKLVINTTNNNN--TSRAAGETSKSRPSGSNYGHMSRSDKIAAIKNKLR

Query:  AL
         +
Subjt:  AL

Q6PBM8 Probable RNA-binding protein 185.1e-0737.61Show/hide
Query:  DFLWHTRGPKRGEPRGFAFIEYSSKEEAKLAKENMHGKLACSRPLVVRLASEKLVINTTNNNNTSRAAGETSKSRPSGSNYGHMSRSDKIAAIKNKLRAL
        DFL+H  GP  G+PRG+ F+ + +KEEA+ A + ++GKLA S+ LVVR A  +         N   A+ E S S         +S + KI AI+ KL+ +
Subjt:  DFLWHTRGPKRGEPRGFAFIEYSSKEEAKLAKENMHGKLACSRPLVVRLASEKLVINTTNNNNTSRAAGETSKSRPSGSNYGHMSRSDKIAAIKNKLRAL

Query:  EGGEGERSG
        E    + SG
Subjt:  EGGEGERSG

Q96H35 Probable RNA-binding protein 183.9e-0736.27Show/hide
Query:  DFLWHTRGPKRGEPRGFAFIEYSSKEEAKLAKENMHGKLACSRPLVVRLASEKLVINTTNNNN--TSRAAGETSKSRPSGSNYGHMSRSDKIAAIKNKLR
        DFL+H  G   G+PRG+ F+ + +K+EA+ A + ++GKLA S+ LVVR A  ++     N N+     +   +S + P+ SN   +S + KI AI+ KL+
Subjt:  DFLWHTRGPKRGEPRGFAFIEYSSKEEAKLAKENMHGKLACSRPLVVRLASEKLVINTTNNNN--TSRAAGETSKSRPSGSNYGHMSRSDKIAAIKNKLR

Query:  AL
         +
Subjt:  AL

Q9CR83 Probable RNA-binding protein 183.9e-0736.27Show/hide
Query:  DFLWHTRGPKRGEPRGFAFIEYSSKEEAKLAKENMHGKLACSRPLVVRLASEKLVINTTNNNN--TSRAAGETSKSRPSGSNYGHMSRSDKIAAIKNKLR
        DFL+H  G   G+PRG+ F+ + +K+EA+ A + ++GKLA S+ LVVR A  ++     N N+     +   +S + P+ SN   +S + KI AI+ KL+
Subjt:  DFLWHTRGPKRGEPRGFAFIEYSSKEEAKLAKENMHGKLACSRPLVVRLASEKLVINTTNNNN--TSRAAGETSKSRPSGSNYGHMSRSDKIAAIKNKLR

Query:  AL
         +
Subjt:  AL

Arabidopsis top hitse value%identityAlignment
AT1G71770.1 poly(A)-binding protein 51.8e-0448.84Show/hide
Query:  RGEPRGFAFIEYSSKEEAKLAKENMHGKLACSRPLVVRLASEK
        +G  RGF F+ YS+ EEA LA + M+GK+   +PL V LA  K
Subjt:  RGEPRGFAFIEYSSKEEAKLAKENMHGKLACSRPLVVRLASEK

AT1G71770.2 poly(A)-binding protein 51.8e-0448.84Show/hide
Query:  RGEPRGFAFIEYSSKEEAKLAKENMHGKLACSRPLVVRLASEK
        +G  RGF F+ YS+ EEA LA + M+GK+   +PL V LA  K
Subjt:  RGEPRGFAFIEYSSKEEAKLAKENMHGKLACSRPLVVRLASEK

AT5G52545.1 unknown protein4.5e-1151.85Show/hide
Query:  MHGKLACSRPLVVRLASEKLVINTTNNNNTSRAAGETSKSR-PSGSNYGHMSRSDKIAAIKNKLRALEGGEGERSGVKKQK
        MHG+LAC RPLVVRLASEK  +  ++++++ R+  E +++R  +GS+ G MSR +K+ AIKNKL+ALE  E E+   KKQK
Subjt:  MHGKLACSRPLVVRLASEKLVINTTNNNNTSRAAGETSKSR-PSGSNYGHMSRSDKIAAIKNKLRALEGGEGERSGVKKQK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AAGTTCAGCTGTTCATCTCTAGAATCTTCCTTGGCATGGGCAGAGATATGCTGTGAAGTCCAGAAAAATCCCTATACTTTCGTGGAACTGAACTTGCTGATTGGCTCACT
TATGGTTATGATAATATCTGAGGATTTCTTGTGGCACACACGTGGTCCGAAGCGTGGAGAGCCACGCGGATTCGCCTTCATTGAATACAGCTCCAAGGAGGAAGCTAAAC
TGGCTAAAGAGAATATGCATGGAAAATTAGCTTGCAGTCGTCCATTGGTCGTGCGCCTTGCGAGTGAGAAGCTCGTGATTAACACAACAAATAATAATAATACTTCAAGA
GCAGCAGGTGAGACGAGCAAATCAAGACCGAGTGGCAGCAACTACGGACATATGAGTCGCAGCGATAAGATTGCTGCCATAAAGAACAAATTGAGAGCTTTGGAAGGAGG
AGAGGGGGAGAGGTCTGGTGTGAAAAAACAGAAGCAAGGT
mRNA sequenceShow/hide mRNA sequence
AAGTTCAGCTGTTCATCTCTAGAATCTTCCTTGGCATGGGCAGAGATATGCTGTGAAGTCCAGAAAAATCCCTATACTTTCGTGGAACTGAACTTGCTGATTGGCTCACT
TATGGTTATGATAATATCTGAGGATTTCTTGTGGCACACACGTGGTCCGAAGCGTGGAGAGCCACGCGGATTCGCCTTCATTGAATACAGCTCCAAGGAGGAAGCTAAAC
TGGCTAAAGAGAATATGCATGGAAAATTAGCTTGCAGTCGTCCATTGGTCGTGCGCCTTGCGAGTGAGAAGCTCGTGATTAACACAACAAATAATAATAATACTTCAAGA
GCAGCAGGTGAGACGAGCAAATCAAGACCGAGTGGCAGCAACTACGGACATATGAGTCGCAGCGATAAGATTGCTGCCATAAAGAACAAATTGAGAGCTTTGGAAGGAGG
AGAGGGGGAGAGGTCTGGTGTGAAAAAACAGAAGCAAGGT
Protein sequenceShow/hide protein sequence
KFSCSSLESSLAWAEICCEVQKNPYTFVELNLLIGSLMVMIISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKLAKENMHGKLACSRPLVVRLASEKLVINTTNNNNTSR
AAGETSKSRPSGSNYGHMSRSDKIAAIKNKLRALEGGEGERSGVKKQKQG