; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg08442 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg08442
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionDNA polymerase delta subunit 4
Genome locationCarg_Chr02:5687518..5688686
RNA-Seq ExpressionCarg08442
SyntenyCarg08442
Gene Ontology termsGO:0000731 - DNA synthesis involved in DNA repair (biological process)
GO:0006261 - DNA-dependent DNA replication (biological process)
GO:0043625 - delta DNA polymerase complex (cellular component)
GO:0003887 - DNA-directed DNA polymerase activity (molecular function)
InterPro domainsIPR007218 - DNA polymerase delta, subunit 4


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6605696.1 DNA polymerase delta subunit 4, partial [Cucurbita argyrosperma subsp. sororia]5.9e-61100Show/hide
Query:  MASARGGMKDFYKQRKNSGVSKVSKPSSRKTKSRANSATLDSDAVQPAALISHGSLDLRDDYGESENILRQFDMNMAYGPCLGMTRMERWELARKLGLNP
        MASARGGMKDFYKQRKNSGVSKVSKPSSRKTKSRANSATLDSDAVQPAALISHGSLDLRDDYGESENILRQFDMNMAYGPCLGMTRMERWELARKLGLNP
Subjt:  MASARGGMKDFYKQRKNSGVSKVSKPSSRKTKSRANSATLDSDAVQPAALISHGSLDLRDDYGESENILRQFDMNMAYGPCLGMTRMERWELARKLGLNP

Query:  PKEIESLLKGGKVQLECLWASRI
        PKEIESLLKGGKVQLECLWASRI
Subjt:  PKEIESLLKGGKVQLECLWASRI

XP_008467236.1 PREDICTED: DNA polymerase delta subunit 4 [Cucumis melo]5.7e-4880.8Show/hide
Query:  MASARGGMKDFYKQRKNSGVS--KVSKPSSRKTKSRANSATLDSDAVQPAALISHGSLDLRDDYGESENILRQFDMNMAYGPCLGMTRMERWELARKLGL
        MAS RGG+KDFYKQRK+SG+S  K SKPSSRKTKS ANSA+L S+AVQPAAL+SHGSLDL+DDYGESEN+LRQFDMNMAYGPCLGMTRM RWE A  LGL
Subjt:  MASARGGMKDFYKQRKNSGVS--KVSKPSSRKTKSRANSATLDSDAVQPAALISHGSLDLRDDYGESENILRQFDMNMAYGPCLGMTRMERWELARKLGL

Query:  NPPKEIESLLKGGKVQLECLWASRI
        NPPK+I +LLK GKVQLECLW SR+
Subjt:  NPPKEIESLLKGGKVQLECLWASRI

XP_022957680.1 uncharacterized protein LOC111459143 [Cucurbita moschata]3.8e-6098.37Show/hide
Query:  MASARGGMKDFYKQRKNSGVSKVSKPSSRKTKSRANSATLDSDAVQPAALISHGSLDLRDDYGESENILRQFDMNMAYGPCLGMTRMERWELARKLGLNP
        MASARGGMKDFYKQRKNSGVSKVSKPSSRKTKSRANSATLDSD VQPAALISHGSLDLRDDYGESENILRQFDMNMAYGPCLGMTRMERWELARKLGLNP
Subjt:  MASARGGMKDFYKQRKNSGVSKVSKPSSRKTKSRANSATLDSDAVQPAALISHGSLDLRDDYGESENILRQFDMNMAYGPCLGMTRMERWELARKLGLNP

Query:  PKEIESLLKGGKVQLECLWASRI
        PKEIE+LLKGGKVQLECLWASRI
Subjt:  PKEIESLLKGGKVQLECLWASRI

XP_022995740.1 uncharacterized protein LOC111491182 [Cucurbita maxima]9.4e-5996.75Show/hide
Query:  MASARGGMKDFYKQRKNSGVSKVSKPSSRKTKSRANSATLDSDAVQPAALISHGSLDLRDDYGESENILRQFDMNMAYGPCLGMTRMERWELARKLGLNP
        MASARGGMKDFYKQRKNSGVSKVSKPSS KTKSRA+SATLDSD VQPAALISHGSLDLRDDYGESENILRQFDMNMAYGPCLGMTRMERWELARKLGLNP
Subjt:  MASARGGMKDFYKQRKNSGVSKVSKPSSRKTKSRANSATLDSDAVQPAALISHGSLDLRDDYGESENILRQFDMNMAYGPCLGMTRMERWELARKLGLNP

Query:  PKEIESLLKGGKVQLECLWASRI
        PKEIE+LLKGGKVQLECLWASRI
Subjt:  PKEIESLLKGGKVQLECLWASRI

XP_023532644.1 uncharacterized protein LOC111794744 [Cucurbita pepo subsp. pepo]7.2e-5996.75Show/hide
Query:  MASARGGMKDFYKQRKNSGVSKVSKPSSRKTKSRANSATLDSDAVQPAALISHGSLDLRDDYGESENILRQFDMNMAYGPCLGMTRMERWELARKLGLNP
        MASARGGMKDFYKQRKNSGVSKVSKPSSRKTKSRANSATLDSD VQPA LISHGSLDLRDDYGESENILRQFDMNMAYGPCLGMTRMERWELA KLGLNP
Subjt:  MASARGGMKDFYKQRKNSGVSKVSKPSSRKTKSRANSATLDSDAVQPAALISHGSLDLRDDYGESENILRQFDMNMAYGPCLGMTRMERWELARKLGLNP

Query:  PKEIESLLKGGKVQLECLWASRI
        PKEIE+LLKGGKVQLECLWASRI
Subjt:  PKEIESLLKGGKVQLECLWASRI

TrEMBL top hitse value%identityAlignment
A0A0A0KND6 Uncharacterized protein4.0e-4780Show/hide
Query:  MASARGGMKDFYKQRKNSGVS--KVSKPSSRKTKSRANSATLDSDAVQPAALISHGSLDLRDDYGESENILRQFDMNMAYGPCLGMTRMERWELARKLGL
        MAS RGG+KDFYKQRK+SG+S  K SKPSSRKTKS ANSA+L SDAVQPAAL+SHGSLDL+DDYG SEN LRQFDMN AYGPCLGMTRM RWE A  LGL
Subjt:  MASARGGMKDFYKQRKNSGVS--KVSKPSSRKTKSRANSATLDSDAVQPAALISHGSLDLRDDYGESENILRQFDMNMAYGPCLGMTRMERWELARKLGL

Query:  NPPKEIESLLKGGKVQLECLWASRI
        NPPK+I +LLK GKVQLECLW SR+
Subjt:  NPPKEIESLLKGGKVQLECLWASRI

A0A1S3CT23 DNA polymerase delta subunit 42.8e-4880.8Show/hide
Query:  MASARGGMKDFYKQRKNSGVS--KVSKPSSRKTKSRANSATLDSDAVQPAALISHGSLDLRDDYGESENILRQFDMNMAYGPCLGMTRMERWELARKLGL
        MAS RGG+KDFYKQRK+SG+S  K SKPSSRKTKS ANSA+L S+AVQPAAL+SHGSLDL+DDYGESEN+LRQFDMNMAYGPCLGMTRM RWE A  LGL
Subjt:  MASARGGMKDFYKQRKNSGVS--KVSKPSSRKTKSRANSATLDSDAVQPAALISHGSLDLRDDYGESENILRQFDMNMAYGPCLGMTRMERWELARKLGL

Query:  NPPKEIESLLKGGKVQLECLWASRI
        NPPK+I +LLK GKVQLECLW SR+
Subjt:  NPPKEIESLLKGGKVQLECLWASRI

A0A5A7UNL0 DNA polymerase delta subunit 42.8e-4880.8Show/hide
Query:  MASARGGMKDFYKQRKNSGVS--KVSKPSSRKTKSRANSATLDSDAVQPAALISHGSLDLRDDYGESENILRQFDMNMAYGPCLGMTRMERWELARKLGL
        MAS RGG+KDFYKQRK+SG+S  K SKPSSRKTKS ANSA+L S+AVQPAAL+SHGSLDL+DDYGESEN+LRQFDMNMAYGPCLGMTRM RWE A  LGL
Subjt:  MASARGGMKDFYKQRKNSGVS--KVSKPSSRKTKSRANSATLDSDAVQPAALISHGSLDLRDDYGESENILRQFDMNMAYGPCLGMTRMERWELARKLGL

Query:  NPPKEIESLLKGGKVQLECLWASRI
        NPPK+I +LLK GKVQLECLW SR+
Subjt:  NPPKEIESLLKGGKVQLECLWASRI

A0A6J1H180 uncharacterized protein LOC1114591431.8e-6098.37Show/hide
Query:  MASARGGMKDFYKQRKNSGVSKVSKPSSRKTKSRANSATLDSDAVQPAALISHGSLDLRDDYGESENILRQFDMNMAYGPCLGMTRMERWELARKLGLNP
        MASARGGMKDFYKQRKNSGVSKVSKPSSRKTKSRANSATLDSD VQPAALISHGSLDLRDDYGESENILRQFDMNMAYGPCLGMTRMERWELARKLGLNP
Subjt:  MASARGGMKDFYKQRKNSGVSKVSKPSSRKTKSRANSATLDSDAVQPAALISHGSLDLRDDYGESENILRQFDMNMAYGPCLGMTRMERWELARKLGLNP

Query:  PKEIESLLKGGKVQLECLWASRI
        PKEIE+LLKGGKVQLECLWASRI
Subjt:  PKEIESLLKGGKVQLECLWASRI

A0A6J1K4T3 uncharacterized protein LOC1114911824.5e-5996.75Show/hide
Query:  MASARGGMKDFYKQRKNSGVSKVSKPSSRKTKSRANSATLDSDAVQPAALISHGSLDLRDDYGESENILRQFDMNMAYGPCLGMTRMERWELARKLGLNP
        MASARGGMKDFYKQRKNSGVSKVSKPSS KTKSRA+SATLDSD VQPAALISHGSLDLRDDYGESENILRQFDMNMAYGPCLGMTRMERWELARKLGLNP
Subjt:  MASARGGMKDFYKQRKNSGVSKVSKPSSRKTKSRANSATLDSDAVQPAALISHGSLDLRDDYGESENILRQFDMNMAYGPCLGMTRMERWELARKLGLNP

Query:  PKEIESLLKGGKVQLECLWASRI
        PKEIE+LLKGGKVQLECLWASRI
Subjt:  PKEIESLLKGGKVQLECLWASRI

SwissProt top hitse value%identityAlignment
O59835 DNA polymerase delta subunit 44.3e-0651.16Show/hide
Query:  ENILRQFDMNMAYGPCLGMTRMERWELARKLGLNPPKEIESLL
        E IL  FD    YGP LGMTRM+RW+ A+   LNPP+ +  +L
Subjt:  ENILRQFDMNMAYGPCLGMTRMERWELARKLGLNPPKEIESLL

Q3T0X9 DNA polymerase delta subunit 41.6e-0844.07Show/hide
Query:  ESENILRQFDMNMAYGPCLGMTRMERWELARKLGLNPPKEIESLLKG--GKVQLEC-LW
        E   +LRQFD+   YGPC G+TR++RW  A ++GL PP E+  +L+   G  + +C LW
Subjt:  ESENILRQFDMNMAYGPCLGMTRMERWELARKLGLNPPKEIESLLKG--GKVQLEC-LW

Q9CWP8 DNA polymerase delta subunit 41.7e-0752.38Show/hide
Query:  ILRQFDMNMAYGPCLGMTRMERWELARKLGLNPPKEIESLLK
        +LRQFD+   YGPC G+TR++RW  A ++GL PP E+  +LK
Subjt:  ILRQFDMNMAYGPCLGMTRMERWELARKLGLNPPKEIESLLK

Q9HCU8 DNA polymerase delta subunit 42.1e-0843.75Show/hide
Query:  RDDYGESENILRQFDMNMAYGPCLGMTRMERWELARKLGLNPPKEIESLLK--GGKVQLEC-LW
        RD+      +LRQFD+   YGPC G+TR++RW  A+++GL PP E+  +LK   G  + +C LW
Subjt:  RDDYGESENILRQFDMNMAYGPCLGMTRMERWELARKLGLNPPKEIESLLK--GGKVQLEC-LW

Arabidopsis top hitse value%identityAlignment
AT1G09815.1 polymerase delta 43.5e-3559.52Show/hide
Query:  MASARGGMKDFYKQRKNS---GVSKVSKPSSRKTKSRANSATLDSDAVQPAALISHGSLDLRDDYGESENILRQFDMNMAYGPCLGMTRMERWELARKLG
        MA+    +K FYKQ K++   G+SK SKPSSRK   + ++A   SD  QPAALISHGS+DL +DY + E +LRQFDMN+ YGPCLGMTR++RWE A +LG
Subjt:  MASARGGMKDFYKQRKNS---GVSKVSKPSSRKTKSRANSATLDSDAVQPAALISHGSLDLRDDYGESENILRQFDMNMAYGPCLGMTRMERWELARKLG

Query:  LNPPKEIESLLKGGKVQLECLWASRI
        +NPP EIE LLK GKVQ +CLW  R+
Subjt:  LNPPKEIESLLKGGKVQLECLWASRI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCATCCGCTCGAGGAGGGATGAAAGATTTCTACAAGCAAAGGAAGAACAGTGGAGTCTCTAAGGTTTCAAAGCCCTCTTCTAGAAAAACCAAATCTCGGGCCAACTC
TGCAACTTTGGACTCCGATGCCGTTCAACCGGCGGCTCTTATTTCTCACGGTTCCCTCGATCTCCGAGATGATTATGGTGAGTCTGAGAATATACTGAGGCAATTTGACA
TGAACATGGCCTATGGACCTTGCCTTGGAATGACAAGAATGGAACGATGGGAGCTTGCCCGTAAGCTTGGTTTGAACCCTCCAAAAGAAATTGAGTCACTCTTAAAGGGT
GGGAAAGTGCAGTTAGAGTGCTTGTGGGCTTCCCGAATCTAA
mRNA sequenceShow/hide mRNA sequence
TCAAGAACAAAATTCAAATTTTGAAAATCGATCAGAGAGAGTGAGAGGAAGAAAAATGGCATCCGCTCGAGGAGGGATGAAAGATTTCTACAAGCAAAGGAAGAACAGTG
GAGTCTCTAAGGTTTCAAAGCCCTCTTCTAGAAAAACCAAATCTCGGGCCAACTCTGCAACTTTGGACTCCGATGCCGTTCAACCGGCGGCTCTTATTTCTCACGGTTCC
CTCGATCTCCGAGATGATTATGGTGAGTCTGAGAATATACTGAGGCAATTTGACATGAACATGGCCTATGGACCTTGCCTTGGAATGACAAGAATGGAACGATGGGAGCT
TGCCCGTAAGCTTGGTTTGAACCCTCCAAAAGAAATTGAGTCACTCTTAAAGGGTGGGAAAGTGCAGTTAGAGTGCTTGTGGGCTTCCCGAATCTAAAGACTGCCCTGTT
ACCTATGTTATTTTCGGTTAATGTATGAAGTTTATGATGTGCTTTTGGACAAAATGTTCAGCCTCTGGCTGAAATCATAAATGCTCTTGTTTTCTTTTTTCCTTTGTCAT
GTTTCTTAAAAGAAATCTGTCTACCTTGTAGAATTTAAAATCTATGTCAATGTCATAATGGTGGTAGGGA
Protein sequenceShow/hide protein sequence
MASARGGMKDFYKQRKNSGVSKVSKPSSRKTKSRANSATLDSDAVQPAALISHGSLDLRDDYGESENILRQFDMNMAYGPCLGMTRMERWELARKLGLNPPKEIESLLKG
GKVQLECLWASRI