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Carg08461 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg08461
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionCDGSH iron-sulfur domain-containing protein NEET
Genome locationCarg_Chr02:5563999..5564655
RNA-Seq ExpressionCarg08461
SyntenyCarg08461
Gene Ontology termsGO:0010506 - regulation of autophagy (biological process)
GO:0005741 - mitochondrial outer membrane (cellular component)
GO:0046872 - metal ion binding (molecular function)
GO:0051537 - 2 iron, 2 sulfur cluster binding (molecular function)
InterPro domainsIPR018967 - Iron-binding zinc finger, CDGSH type
IPR042216 - MitoNEET, CDGSH iron-sulfur domain
IPR045131 - CDGSH iron-sulfur domain-containing protein 1/2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6605678.1 CDGSH iron-sulfur domain-containing protein NEET, partial [Cucurbita argyrosperma subsp. sororia]1.8e-5097.12Show/hide
Query:  MASLPATSALPTTPPPHVNFTVGGIPRRRMVVVVRAEGGQAINPAIRKSEDKVVDSVVVADLAKPLTPYCRCWRSATFPLCDGSHVKHNKATGDNVGPLL
        MASLPATSALPTT PPH NFTVGG+PRRRMVVVVRAEGGQAINPAIRKSEDKVVDSVVVADLAKPLTPYCRCWRSATFPLCDGSHVKHNKATGDNVGPLL
Subjt:  MASLPATSALPTTPPPHVNFTVGGIPRRRMVVVVRAEGGQAINPAIRKSEDKVVDSVVVADLAKPLTPYCRCWRSATFPLCDGSHVKHNKATGDNVGPLL

Query:  LKKQ
        LKKQ
Subjt:  LKKQ

KAG7035586.1 CDGSH iron-sulfur domain-containing protein NEET [Cucurbita argyrosperma subsp. argyrosperma]1.4e-52100Show/hide
Query:  MASLPATSALPTTPPPHVNFTVGGIPRRRMVVVVRAEGGQAINPAIRKSEDKVVDSVVVADLAKPLTPYCRCWRSATFPLCDGSHVKHNKATGDNVGPLL
        MASLPATSALPTTPPPHVNFTVGGIPRRRMVVVVRAEGGQAINPAIRKSEDKVVDSVVVADLAKPLTPYCRCWRSATFPLCDGSHVKHNKATGDNVGPLL
Subjt:  MASLPATSALPTTPPPHVNFTVGGIPRRRMVVVVRAEGGQAINPAIRKSEDKVVDSVVVADLAKPLTPYCRCWRSATFPLCDGSHVKHNKATGDNVGPLL

Query:  LKKQ
        LKKQ
Subjt:  LKKQ

XP_022958373.1 CDGSH iron-sulfur domain-containing protein NEET [Cucurbita moschata]2.3e-5097.12Show/hide
Query:  MASLPATSALPTTPPPHVNFTVGGIPRRRMVVVVRAEGGQAINPAIRKSEDKVVDSVVVADLAKPLTPYCRCWRSATFPLCDGSHVKHNKATGDNVGPLL
        MASLPATSALPTT PPH NFTVGG+PRRRMVVVVRAEGGQAINPAIRKSEDKVVDSVVVADLAKPLTPYCRCWRSATFPLCDGSHVKHNKATGDNVGPLL
Subjt:  MASLPATSALPTTPPPHVNFTVGGIPRRRMVVVVRAEGGQAINPAIRKSEDKVVDSVVVADLAKPLTPYCRCWRSATFPLCDGSHVKHNKATGDNVGPLL

Query:  LKKQ
        LKKQ
Subjt:  LKKQ

XP_022996357.1 CDGSH iron-sulfur domain-containing protein NEET [Cucurbita maxima]3.1e-4794.23Show/hide
Query:  MASLPATSALPTTPPPHVNFTVGGIPRRRMVVVVRAEGGQAINPAIRKSEDKVVDSVVVADLAKPLTPYCRCWRSATFPLCDGSHVKHNKATGDNVGPLL
        MASL ATSALPTT PPH NFTVGG+PRRRM VVVRAEGG+AINPAIRKSEDKVVDSVVVADLAKPLTPYCRCWRSATFPLCDGSHVKHNKATGDNVGPLL
Subjt:  MASLPATSALPTTPPPHVNFTVGGIPRRRMVVVVRAEGGQAINPAIRKSEDKVVDSVVVADLAKPLTPYCRCWRSATFPLCDGSHVKHNKATGDNVGPLL

Query:  LKKQ
        LKKQ
Subjt:  LKKQ

XP_023534172.1 CDGSH iron-sulfur domain-containing protein NEET [Cucurbita pepo subsp. pepo]1.3e-4895.19Show/hide
Query:  MASLPATSALPTTPPPHVNFTVGGIPRRRMVVVVRAEGGQAINPAIRKSEDKVVDSVVVADLAKPLTPYCRCWRSATFPLCDGSHVKHNKATGDNVGPLL
        MASLPATSALPTT PPHVNFT+GG+PRRRM VVVRAEGG+AINPAIRKSEDKVVDSVVVADLAKPLTPYCRCWRSATFPLCDGSHVKHNKATGDNVGPLL
Subjt:  MASLPATSALPTTPPPHVNFTVGGIPRRRMVVVVRAEGGQAINPAIRKSEDKVVDSVVVADLAKPLTPYCRCWRSATFPLCDGSHVKHNKATGDNVGPLL

Query:  LKKQ
        LKKQ
Subjt:  LKKQ

TrEMBL top hitse value%identityAlignment
A0A2N9GG84 ZnF_CDGSH domain-containing protein9.9e-3176.6Show/hide
Query:  TTPPPHV-NFTVGGIPRRRMVVVVRAEGGQAINPAIRKSEDKVVDSVVVADLAKPLTPYCRCWRSATFPLCDGSHVKHNKATGDNVGPLLLKKQ
        TTP  H  + + GG+  R   VVVRAE  QAINP IRKSEDKVVD+VVV DL+KPLT YCRCWRS TFPLCDGSHVKHNKATGDNVGPLLLKKQ
Subjt:  TTPPPHV-NFTVGGIPRRRMVVVVRAEGGQAINPAIRKSEDKVVDSVVVADLAKPLTPYCRCWRSATFPLCDGSHVKHNKATGDNVGPLLLKKQ

A0A2P5CG12 CDGSH iron-sulfur domain-containing protein 2A1.7e-3087.67Show/hide
Query:  VVVRAEGGQAINPAIRKSEDKVVDSVVVADLAKPLTPYCRCWRSATFPLCDGSHVKHNKATGDNVGPLLLKKQ
        +VV+AEG QAINP IRK+EDKVVDSVVV++L+KPLTPYCRCWRS TFPLCDGSHVKHNKATGDNVGPLLLKKQ
Subjt:  VVVRAEGGQAINPAIRKSEDKVVDSVVVADLAKPLTPYCRCWRSATFPLCDGSHVKHNKATGDNVGPLLLKKQ

A0A6A2ZR57 CDGSH iron-sulfur domain-containing protein 2A2.6e-3171.57Show/hide
Query:  ATSALPTTPPPHVNFTVGGI---PRRRMVVVVRAEGGQAINPAIRKSEDKVVDSVVVADLAKPLTPYCRCWRSATFPLCDGSHVKHNKATGDNVGPLLLK
        +T+AL   P P + F V  I   PR    +VVRAE GQ INP IRK+E+KVVDSVVV++L+KPLTPYCRCWRS TFPLCDGSHVKHNKATGDNVGPLLLK
Subjt:  ATSALPTTPPPHVNFTVGGI---PRRRMVVVVRAEGGQAINPAIRKSEDKVVDSVVVADLAKPLTPYCRCWRSATFPLCDGSHVKHNKATGDNVGPLLLK

Query:  KQ
        KQ
Subjt:  KQ

A0A6J1H2X5 CDGSH iron-sulfur domain-containing protein NEET1.1e-5097.12Show/hide
Query:  MASLPATSALPTTPPPHVNFTVGGIPRRRMVVVVRAEGGQAINPAIRKSEDKVVDSVVVADLAKPLTPYCRCWRSATFPLCDGSHVKHNKATGDNVGPLL
        MASLPATSALPTT PPH NFTVGG+PRRRMVVVVRAEGGQAINPAIRKSEDKVVDSVVVADLAKPLTPYCRCWRSATFPLCDGSHVKHNKATGDNVGPLL
Subjt:  MASLPATSALPTTPPPHVNFTVGGIPRRRMVVVVRAEGGQAINPAIRKSEDKVVDSVVVADLAKPLTPYCRCWRSATFPLCDGSHVKHNKATGDNVGPLL

Query:  LKKQ
        LKKQ
Subjt:  LKKQ

A0A6J1K1P5 CDGSH iron-sulfur domain-containing protein NEET1.5e-4794.23Show/hide
Query:  MASLPATSALPTTPPPHVNFTVGGIPRRRMVVVVRAEGGQAINPAIRKSEDKVVDSVVVADLAKPLTPYCRCWRSATFPLCDGSHVKHNKATGDNVGPLL
        MASL ATSALPTT PPH NFTVGG+PRRRM VVVRAEGG+AINPAIRKSEDKVVDSVVVADLAKPLTPYCRCWRSATFPLCDGSHVKHNKATGDNVGPLL
Subjt:  MASLPATSALPTTPPPHVNFTVGGIPRRRMVVVVRAEGGQAINPAIRKSEDKVVDSVVVADLAKPLTPYCRCWRSATFPLCDGSHVKHNKATGDNVGPLL

Query:  LKKQ
        LKKQ
Subjt:  LKKQ

SwissProt top hitse value%identityAlignment
B9EPI1 CDGSH iron-sulfur domain-containing protein 2A1.0e-1658.73Show/hide
Query:  INPAIRKSEDKVVDSVVVADLAKPLTPYCRCWRSATFPLCDGSHVKHNKATGDNVGPLLLKKQ
        IN  I+K   KVV+ + + DL +    YCRCWRS TFP+CD SH+KHN+ TGDNVGPL+LKK+
Subjt:  INPAIRKSEDKVVDSVVVADLAKPLTPYCRCWRSATFPLCDGSHVKHNKATGDNVGPLLLKKQ

Q6AZG1 CDGSH iron-sulfur domain-containing protein 2B1.0e-1660.32Show/hide
Query:  INPAIRKSEDKVVDSVVVADLAKPLTPYCRCWRSATFPLCDGSHVKHNKATGDNVGPLLLKKQ
        IN  I+K   KVV+ + + DL      YCRCWRS TFP+CDGSH KHN+ TGDNVGPL+LKK+
Subjt:  INPAIRKSEDKVVDSVVVADLAKPLTPYCRCWRSATFPLCDGSHVKHNKATGDNVGPLLLKKQ

Q6PCF8 CDGSH iron-sulfur domain-containing protein 2A7.8e-1748.19Show/hide
Query:  VGGIPRRRMVVVVRAEGGQAINPAIRKSEDKVVDSVVVADLAKPLTPYCRCWRSATFPLCDGSHVKHNKATGDNVGPLLLKKQ
        +G +  R  ++  + +    IN  I+K   KVV+ + + DL      YCRCWRS TFP+CDGSH KHN+ TGDNVGPL+LKK+
Subjt:  VGGIPRRRMVVVVRAEGGQAINPAIRKSEDKVVDSVVVADLAKPLTPYCRCWRSATFPLCDGSHVKHNKATGDNVGPLLLKKQ

Q7T326 CDGSH iron-sulfur domain-containing protein 22.7e-1760.32Show/hide
Query:  INPAIRKSEDKVVDSVVVADLAKPLTPYCRCWRSATFPLCDGSHVKHNKATGDNVGPLLLKKQ
        IN  I+K   KVV+ + + DL  P   YCRCWRS TFP+CD SH+KHN+ TGDNVGPL+LKK+
Subjt:  INPAIRKSEDKVVDSVVVADLAKPLTPYCRCWRSATFPLCDGSHVKHNKATGDNVGPLLLKKQ

Q9FLI7 CDGSH iron-sulfur domain-containing protein NEET8.6e-3273.33Show/hide
Query:  PHVNFTVGGIPRRRM-VVVVRAEGGQAINPAIRKSEDKVVDSVVVADLAKPLTPYCRCWRSATFPLCDGSHVKHNKATGDNVGPLLLKKQ
        P    T G + R++  +VVVRAEGG  INP IRK+EDKVVDSVVV +L+K +TPYCRCWRS TFPLCDGSHVKHNKA GDNVGPLLLKKQ
Subjt:  PHVNFTVGGIPRRRM-VVVVRAEGGQAINPAIRKSEDKVVDSVVVADLAKPLTPYCRCWRSATFPLCDGSHVKHNKATGDNVGPLLLKKQ

Arabidopsis top hitse value%identityAlignment
AT5G51720.1 2 iron, 2 sulfur cluster binding6.1e-3373.33Show/hide
Query:  PHVNFTVGGIPRRRM-VVVVRAEGGQAINPAIRKSEDKVVDSVVVADLAKPLTPYCRCWRSATFPLCDGSHVKHNKATGDNVGPLLLKKQ
        P    T G + R++  +VVVRAEGG  INP IRK+EDKVVDSVVV +L+K +TPYCRCWRS TFPLCDGSHVKHNKA GDNVGPLLLKKQ
Subjt:  PHVNFTVGGIPRRRM-VVVVRAEGGQAINPAIRKSEDKVVDSVVVADLAKPLTPYCRCWRSATFPLCDGSHVKHNKATGDNVGPLLLKKQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCTCGCTTCCTGCCACTTCCGCCTTACCAACAACCCCTCCTCCTCACGTTAACTTCACCGTCGGCGGAATTCCGCGGCGGCGCATGGTGGTGGTGGTCAGAGCCGA
AGGCGGCCAAGCCATAAACCCAGCAATCAGGAAGAGCGAGGACAAAGTGGTGGACTCCGTGGTTGTCGCCGACCTTGCCAAGCCCCTCACACCCTATTGCAGATGTTGGA
GGTCAGCCACATTTCCTCTATGTGATGGAAGCCATGTTAAGCACAACAAGGCCACCGGAGATAATGTCGGCCCTTTGCTCTTAAAGAAGCAATAG
mRNA sequenceShow/hide mRNA sequence
GGAGATCCACCGATTAGGCCGGTTTAAGGCACCTTTAAACCCTGCCCTCCACACGTTCATCATCCATTACCACATTTCCTTCACTCGCATCACCACCCTTCCTCTGCTCC
TCCAATGGCCTCGCTTCCTGCCACTTCCGCCTTACCAACAACCCCTCCTCCTCACGTTAACTTCACCGTCGGCGGAATTCCGCGGCGGCGCATGGTGGTGGTGGTCAGAG
CCGAAGGCGGCCAAGCCATAAACCCAGCAATCAGGAAGAGCGAGGACAAAGTGGTGGACTCCGTGGTTGTCGCCGACCTTGCCAAGCCCCTCACACCCTATTGCAGATGT
TGGAGGTCAGCCACATTTCCTCTATGTGATGGAAGCCATGTTAAGCACAACAAGGCCACCGGAGATAATGTCGGCCCTTTGCTCTTAAAGAAGCAATAGAGACAGACACA
CTCTTTCATGTTTTTTCTTCCAACTTCTTCTCTGTTCATTCTACTTTTATTTGCATTCCCATCCCTCATCTTTATAACATTATCAATTTACTCCTTATCACCCTTC
Protein sequenceShow/hide protein sequence
MASLPATSALPTTPPPHVNFTVGGIPRRRMVVVVRAEGGQAINPAIRKSEDKVVDSVVVADLAKPLTPYCRCWRSATFPLCDGSHVKHNKATGDNVGPLLLKKQ