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Carg08463 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg08463
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description40S ribosomal protein S20
Genome locationCarg_Chr02:5546882..5548454
RNA-Seq ExpressionCarg08463
SyntenyCarg08463
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0022627 - cytosolic small ribosomal subunit (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6576788.1 40S ribosomal protein S20-2, partial [Cucurbita argyrosperma subsp. sororia]7.1e-5999.17Show/hide
Query:  MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV
        MAYAAMKPTKAGLED QEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV
Subjt:  MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV

Query:  VKQITSITIEPGVEVEVTIAD
        VKQITSITIEPGVEVEVTIAD
Subjt:  VKQITSITIEPGVEVEVTIAD

KAG6605675.1 40S ribosomal protein S20-2, partial [Cucurbita argyrosperma subsp. sororia]2.4e-59100Show/hide
Query:  MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV
        MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV
Subjt:  MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV

Query:  VKQITSITIEPGVEVEVTIAD
        VKQITSITIEPGVEVEVTIAD
Subjt:  VKQITSITIEPGVEVEVTIAD

XP_022922646.1 40S ribosomal protein S20-2-like isoform X1 [Cucurbita moschata]7.1e-5999.17Show/hide
Query:  MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV
        MAYAAMKPTKAGLED QEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV
Subjt:  MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV

Query:  VKQITSITIEPGVEVEVTIAD
        VKQITSITIEPGVEVEVTIAD
Subjt:  VKQITSITIEPGVEVEVTIAD

XP_022929156.1 40S ribosomal protein S20-2 [Cucurbita moschata]2.4e-59100Show/hide
Query:  MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV
        MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV
Subjt:  MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV

Query:  VKQITSITIEPGVEVEVTIAD
        VKQITSITIEPGVEVEVTIAD
Subjt:  VKQITSITIEPGVEVEVTIAD

XP_022985516.1 40S ribosomal protein S20-2-like [Cucurbita maxima]7.1e-5999.17Show/hide
Query:  MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV
        MAYAAMKPTKAGLED QEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV
Subjt:  MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV

Query:  VKQITSITIEPGVEVEVTIAD
        VKQITSITIEPGVEVEVTIAD
Subjt:  VKQITSITIEPGVEVEVTIAD

TrEMBL top hitse value%identityAlignment
A0A6J1E3W2 40S ribosomal protein S20-2-like isoform X23.4e-5999.17Show/hide
Query:  MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV
        MAYAAMKPTKAGLED QEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV
Subjt:  MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV

Query:  VKQITSITIEPGVEVEVTIAD
        VKQITSITIEPGVEVEVTIAD
Subjt:  VKQITSITIEPGVEVEVTIAD

A0A6J1E4N9 40S ribosomal protein S20-2-like isoform X13.4e-5999.17Show/hide
Query:  MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV
        MAYAAMKPTKAGLED QEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV
Subjt:  MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV

Query:  VKQITSITIEPGVEVEVTIAD
        VKQITSITIEPGVEVEVTIAD
Subjt:  VKQITSITIEPGVEVEVTIAD

A0A6J1H2U8 40S ribosomal protein S20-21.2e-59100Show/hide
Query:  MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV
        MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV
Subjt:  MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV

Query:  VKQITSITIEPGVEVEVTIAD
        VKQITSITIEPGVEVEVTIAD
Subjt:  VKQITSITIEPGVEVEVTIAD

A0A6J1I3A7 40S ribosomal protein S20-21.2e-59100Show/hide
Query:  MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV
        MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV
Subjt:  MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV

Query:  VKQITSITIEPGVEVEVTIAD
        VKQITSITIEPGVEVEVTIAD
Subjt:  VKQITSITIEPGVEVEVTIAD

A0A6J1J8F7 40S ribosomal protein S20-2-like3.4e-5999.17Show/hide
Query:  MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV
        MAYAAMKPTKAGLED QEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV
Subjt:  MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV

Query:  VKQITSITIEPGVEVEVTIAD
        VKQITSITIEPGVEVEVTIAD
Subjt:  VKQITSITIEPGVEVEVTIAD

SwissProt top hitse value%identityAlignment
P23403 40S ribosomal protein S204.8e-4272.81Show/hide
Query:  PTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSI
        P KA + D +  IH+IRITL+S+NVK+LEKVCADL+RGAK+K L+VKGPVRMPTK L ITTRK+PCGEG+ TWDRF++R+HKR+IDL S +++VKQITSI
Subjt:  PTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSI

Query:  TIEPGVEVEVTIAD
        +IEPGVEVEVTIAD
Subjt:  TIEPGVEVEVTIAD

P35686 40S ribosomal protein S203.7e-5083.61Show/hide
Query:  MAYA-AMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSAD
        +AYA  MK  K G E +QE  H+IRITLSSK+VKNLEKVC DLV+GAKDK L+VKGPVRMPTKVLHITTRKSPCGEGTNTWDRFE+RVHKRVIDL SSAD
Subjt:  MAYA-AMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSAD

Query:  VVKQITSITIEPGVEVEVTIAD
        VVKQITSITIEPGVEVEVTI+D
Subjt:  VVKQITSITIEPGVEVEVTIAD

P49200 40S ribosomal protein S20-12.2e-5591.67Show/hide
Query:  AYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVV
        AY  MKP KAGLE+  EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMPTKVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DVV
Subjt:  AYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVV

Query:  KQITSITIEPGVEVEVTIAD
        KQITSITIEPGVEVEVTIAD
Subjt:  KQITSITIEPGVEVEVTIAD

Q3ZBH8 40S ribosomal protein S201.1e-4170.09Show/hide
Query:  AMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQI
        A K T     + +  IH+IRITL+S+NVK+LEKVCADL+RGAK+K L+VKGPVRMPTK L ITTRK+PCGEG+ TWDRF++R+HKR+IDL S +++VKQI
Subjt:  AMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQI

Query:  TSITIEPGVEVEVTIAD
        TSI+IEPGVEVEVTIAD
Subjt:  TSITIEPGVEVEVTIAD

Q9STY6 40S ribosomal protein S20-22.6e-5692.56Show/hide
Query:  MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV
        MAY  MKPTKAGLE   EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMPTKVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DV
Subjt:  MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV

Query:  VKQITSITIEPGVEVEVTIAD
        VKQITSITIEPGVEVEVTIAD
Subjt:  VKQITSITIEPGVEVEVTIAD

Arabidopsis top hitse value%identityAlignment
AT3G45030.1 Ribosomal protein S10p/S20e family protein1.6e-5691.67Show/hide
Query:  AYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVV
        AY  MKP KAGLE+  EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMPTKVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DVV
Subjt:  AYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVV

Query:  KQITSITIEPGVEVEVTIAD
        KQITSITIEPGVEVEVTIAD
Subjt:  KQITSITIEPGVEVEVTIAD

AT3G47370.1 Ribosomal protein S10p/S20e family protein1.9e-5792.56Show/hide
Query:  MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV
        MAY  MKPTKAGLE   EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMPTKVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DV
Subjt:  MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV

Query:  VKQITSITIEPGVEVEVTIAD
        VKQITSITIEPGVEVEVTIAD
Subjt:  VKQITSITIEPGVEVEVTIAD

AT3G47370.2 Ribosomal protein S10p/S20e family protein1.9e-5792.56Show/hide
Query:  MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV
        MAY  MKPTKAGLE   EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMPTKVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DV
Subjt:  MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV

Query:  VKQITSITIEPGVEVEVTIAD
        VKQITSITIEPGVEVEVTIAD
Subjt:  VKQITSITIEPGVEVEVTIAD

AT3G47370.3 Ribosomal protein S10p/S20e family protein1.9e-5792.56Show/hide
Query:  MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV
        MAY  MKPTKAGLE   EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMPTKVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DV
Subjt:  MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV

Query:  VKQITSITIEPGVEVEVTIAD
        VKQITSITIEPGVEVEVTIAD
Subjt:  VKQITSITIEPGVEVEVTIAD

AT5G62300.1 Ribosomal protein S10p/S20e family protein1.6e-5691.67Show/hide
Query:  AYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVV
        AY  MKP KAGLE+  EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMPTKVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DVV
Subjt:  AYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVV

Query:  KQITSITIEPGVEVEVTIAD
        KQITSITIEPGVEVEVTIAD
Subjt:  KQITSITIEPGVEVEVTIAD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGTATGCAGCGATGAAGCCTACGAAGGCTGGTTTGGAGGACGCACAAGAGCAGATCCACAAGATTAGGATCACTCTTTCGTCGAAGAACGTGAAGAACCTTGAGAA
GGTCTGTGCTGATTTGGTTCGGGGTGCCAAGGACAAGAGATTGAGGGTCAAGGGACCTGTGAGGATGCCAACGAAAGTCCTGCACATCACCACCAGGAAATCTCCATGCG
GTGAAGGTACCAACACATGGGACAGATTTGAACTTCGTGTTCACAAGCGGGTCATCGACCTCTTTAGCTCTGCTGATGTTGTTAAGCAGATTACATCTATCACCATTGAA
CCAGGTGTTGAGGTTGAAGTAACAATTGCTGATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCGTATGCAGCGATGAAGCCTACGAAGGCTGGTTTGGAGGACGCACAAGAGCAGATCCACAAGATTAGGATCACTCTTTCGTCGAAGAACGTGAAGAACCTTGAGAA
GGTCTGTGCTGATTTGGTTCGGGGTGCCAAGGACAAGAGATTGAGGGTCAAGGGACCTGTGAGGATGCCAACGAAAGTCCTGCACATCACCACCAGGAAATCTCCATGCG
GTGAAGGTACCAACACATGGGACAGATTTGAACTTCGTGTTCACAAGCGGGTCATCGACCTCTTTAGCTCTGCTGATGTTGTTAAGCAGATTACATCTATCACCATTGAA
CCAGGTGTTGAGGTTGAAGTAACAATTGCTGATTGA
Protein sequenceShow/hide protein sequence
MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIE
PGVEVEVTIAD