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Carg08479 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg08479
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionlate embryogenesis abundant protein At5g17165-like
Genome locationCarg_Chr02:5469738..5469932
RNA-Seq ExpressionCarg08479
SyntenyCarg08479
Gene Ontology termsNA
InterPro domainsIPR039291 - Late embryogenesis abundant protein At5g17165-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6605657.1 ATP-dependent DNA helicase SRS2-like protein, partial [Cucurbita argyrosperma subsp. sororia]9.6e-31100Show/hide
Query:  MLHSLSEDYWAPHPQTGVFGPPTTQHNPVPSDTSGGGAKEGSVLELKVWFRHVELEDPEKPHSL
        MLHSLSEDYWAPHPQTGVFGPPTTQHNPVPSDTSGGGAKEGSVLELKVWFRHVELEDPEKPHSL
Subjt:  MLHSLSEDYWAPHPQTGVFGPPTTQHNPVPSDTSGGGAKEGSVLELKVWFRHVELEDPEKPHSL

KAG7035568.1 Late embryogenesis abundant protein, partial [Cucurbita argyrosperma subsp. argyrosperma]9.6e-31100Show/hide
Query:  MLHSLSEDYWAPHPQTGVFGPPTTQHNPVPSDTSGGGAKEGSVLELKVWFRHVELEDPEKPHSL
        MLHSLSEDYWAPHPQTGVFGPPTTQHNPVPSDTSGGGAKEGSVLELKVWFRHVELEDPEKPHSL
Subjt:  MLHSLSEDYWAPHPQTGVFGPPTTQHNPVPSDTSGGGAKEGSVLELKVWFRHVELEDPEKPHSL

XP_022957877.1 late embryogenesis abundant protein At5g17165-like [Cucurbita moschata]8.7e-2494.64Show/hide
Query:  MLHSLSEDYWAPHPQTGVFGPPTTQHNPVPSDTSGGGAKEGSVLELKVWFRHVELE
        M+HSLSEDYWAPHPQTGVFGPP TQHNPVPSDTS GGAKEGSVLELKVWFRHVELE
Subjt:  MLHSLSEDYWAPHPQTGVFGPPTTQHNPVPSDTSGGGAKEGSVLELKVWFRHVELE

XP_022995249.1 late embryogenesis abundant protein At5g17165-like [Cucurbita maxima]7.6e-2889.06Show/hide
Query:  MLHSLSEDYWAPHPQTGVFGPPTTQHNPVPSDTSGGGAKEGSVLELKVWFRHVELEDPEKPHSL
        M+HS+SEDYWAPHPQTGVFGPP +QHNPVPSDTS GGAKEGSVLELKVWFRH+ELEDPEKPH L
Subjt:  MLHSLSEDYWAPHPQTGVFGPPTTQHNPVPSDTSGGGAKEGSVLELKVWFRHVELEDPEKPHSL

XP_023532525.1 late embryogenesis abundant protein At5g17165-like [Cucurbita pepo subsp. pepo]1.5e-2892.19Show/hide
Query:  MLHSLSEDYWAPHPQTGVFGPPTTQHNPVPSDTSGGGAKEGSVLELKVWFRHVELEDPEKPHSL
        M+HS+SEDYWAPHPQTGVFGPP TQHNPVPSDTS GGAKEGSVLELKVWFRHVELEDPEKPH+L
Subjt:  MLHSLSEDYWAPHPQTGVFGPPTTQHNPVPSDTSGGGAKEGSVLELKVWFRHVELEDPEKPHSL

TrEMBL top hitse value%identityAlignment
A0A0A0KRJ5 Uncharacterized protein9.4e-1670.97Show/hide
Query:  LSEDYWAPHPQTGVFGPPTTQHN--PVPSDTSGGGAKEGSVLELKVWFRHVELEDPEKPHSL
        LSEDYW PHP+TGVFGPP   HN   VP+DTS GG  EGSVL LK WFRH  LED EKPH+L
Subjt:  LSEDYWAPHPQTGVFGPPTTQHN--PVPSDTSGGGAKEGSVLELKVWFRHVELEDPEKPHSL

A0A1S4E6U6 uncharacterized protein LOC1035046943.2e-1668.75Show/hide
Query:  HSLSEDYWAPHPQTGVFGPPTTQHN--PVPSDTSGGGAKEGSVLELKVWFRHVELEDPEKPHSL
        H+LS++YW PHPQTGVFGPP   HN   +P+DTS GG  EGSVL LK WFRH  LED EKPHSL
Subjt:  HSLSEDYWAPHPQTGVFGPPTTQHN--PVPSDTSGGGAKEGSVLELKVWFRHVELEDPEKPHSL

A0A5A7UIY1 Uncharacterized protein4.2e-1665.62Show/hide
Query:  HSLSEDYWAPHPQTGVFGPPTTQH--NPVPSDTSGGGAKEGSVLELKVWFRHVELEDPEKPHSL
        H+LS++YW PHPQTGVFGPP   H  + +P+DTS GG + GSVL LK WFRH  LED EKPHSL
Subjt:  HSLSEDYWAPHPQTGVFGPPTTQH--NPVPSDTSGGGAKEGSVLELKVWFRHVELEDPEKPHSL

A0A6J1H0D3 late embryogenesis abundant protein At5g17165-like4.2e-2494.64Show/hide
Query:  MLHSLSEDYWAPHPQTGVFGPPTTQHNPVPSDTSGGGAKEGSVLELKVWFRHVELE
        M+HSLSEDYWAPHPQTGVFGPP TQHNPVPSDTS GGAKEGSVLELKVWFRHVELE
Subjt:  MLHSLSEDYWAPHPQTGVFGPPTTQHNPVPSDTSGGGAKEGSVLELKVWFRHVELE

A0A6J1K564 late embryogenesis abundant protein At5g17165-like3.7e-2889.06Show/hide
Query:  MLHSLSEDYWAPHPQTGVFGPPTTQHNPVPSDTSGGGAKEGSVLELKVWFRHVELEDPEKPHSL
        M+HS+SEDYWAPHPQTGVFGPP +QHNPVPSDTS GGAKEGSVLELKVWFRH+ELEDPEKPH L
Subjt:  MLHSLSEDYWAPHPQTGVFGPPTTQHNPVPSDTSGGGAKEGSVLELKVWFRHVELEDPEKPHSL

SwissProt top hitse value%identityAlignment
F4KFM8 Late embryogenesis abundant protein At5g171656.3e-0950Show/hide
Query:  MLHSLSEDYWAPHPQTGVFGPPTTQHNPVPSDTSGGGAKEGSVLELKVWFRHVELEDPEKPH
        M+   S+ YW+PHPQTGVFGP ++  N    D   GG +E SV+E K WFR   LED +K H
Subjt:  MLHSLSEDYWAPHPQTGVFGPPTTQHNPVPSDTSGGGAKEGSVLELKVWFRHVELEDPEKPH

Arabidopsis top hitse value%identityAlignment
AT3G03150.1 unknown protein5.3e-1150.88Show/hide
Query:  SEDYWAPHPQTGVFGPPTTQHNPVPSDTSGGGAKEGSVLELKVWFRHVELEDPEKPH
        S+ YW+PHP+TGVFGP TT+H    S T+ G  ++ +VLE   WFR   LED +K H
Subjt:  SEDYWAPHPQTGVFGPPTTQHNPVPSDTSGGGAKEGSVLELKVWFRHVELEDPEKPH

AT5G17165.1 unknown protein4.5e-1050Show/hide
Query:  MLHSLSEDYWAPHPQTGVFGPPTTQHNPVPSDTSGGGAKEGSVLELKVWFRHVELEDPEKPH
        M+   S+ YW+PHPQTGVFGP ++  N    D   GG +E SV+E K WFR   LED +K H
Subjt:  MLHSLSEDYWAPHPQTGVFGPPTTQHNPVPSDTSGGGAKEGSVLELKVWFRHVELEDPEKPH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTCCACTCCTTATCCGAAGACTACTGGGCGCCACATCCCCAAACCGGAGTCTTCGGCCCACCAACAACTCAACACAATCCTGTTCCTAGCGACACGTCGGGTGGCGG
CGCCAAAGAGGGCTCCGTTCTCGAGCTGAAGGTTTGGTTCCGACACGTCGAGCTGGAGGACCCTGAGAAGCCACACTCCCTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGCTCCACTCCTTATCCGAAGACTACTGGGCGCCACATCCCCAAACCGGAGTCTTCGGCCCACCAACAACTCAACACAATCCTGTTCCTAGCGACACGTCGGGTGGCGG
CGCCAAAGAGGGCTCCGTTCTCGAGCTGAAGGTTTGGTTCCGACACGTCGAGCTGGAGGACCCTGAGAAGCCACACTCCCTGTAA
Protein sequenceShow/hide protein sequence
MLHSLSEDYWAPHPQTGVFGPPTTQHNPVPSDTSGGGAKEGSVLELKVWFRHVELEDPEKPHSL