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Carg08485 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg08485
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionSWR1 complex subunit 2
Genome locationCarg_Chr02:5427807..5429756
RNA-Seq ExpressionCarg08485
SyntenyCarg08485
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0043486 - histone exchange (biological process)
GO:0005634 - nucleus (cellular component)
InterPro domainsIPR008895 - Vps72/YL1 family


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6605652.1 SWR1 complex subunit 2, partial [Cucurbita argyrosperma subsp. sororia]1.3e-7385.2Show/hide
Query:  MDSSKERVAPVFLERSSRSTRGKRMTKLLDEEIEEDELFWNQDALKEEEVDDEYEEDPEIVDEHDSDFSEDVSSVSIPFHDIFLVGHKKFFTTWLPFYGQ
        MDSSKERVAPVFLERSSRSTRGKRMTKLLDEEIEEDELFWNQDALKEEEVDDEYEEDPEIVDEHDSDFSED                             
Subjt:  MDSSKERVAPVFLERSSRSTRGKRMTKLLDEEIEEDELFWNQDALKEEEVDDEYEEDPEIVDEHDSDFSEDVSSVSIPFHDIFLVGHKKFFTTWLPFYGQ

Query:  DSEPEEEAENEADERTQTKKRLVSPGKTSSKDNNKKRAVSKIEESSKDEASTDHSTPPEHHDTPDDTEVERTEKKSTRTSAVVREAERDVIRSHNE
        DSEPEEEAENEADERTQTKKRLVSPGKTSSKDNNKKRAVSKIEESSKDEASTDHSTPPEHHDTPDDTEVERTEKKSTRTSAVVREAERDVIRSHNE
Subjt:  DSEPEEEAENEADERTQTKKRLVSPGKTSSKDNNKKRAVSKIEESSKDEASTDHSTPPEHHDTPDDTEVERTEKKSTRTSAVVREAERDVIRSHNE
KAG7035562.1 SWR1 complex subunit 2 [Cucurbita argyrosperma subsp. argyrosperma]1.1e-98100Show/hide
Query:  MDSSKERVAPVFLERSSRSTRGKRMTKLLDEEIEEDELFWNQDALKEEEVDDEYEEDPEIVDEHDSDFSEDVSSVSIPFHDIFLVGHKKFFTTWLPFYGQ
        MDSSKERVAPVFLERSSRSTRGKRMTKLLDEEIEEDELFWNQDALKEEEVDDEYEEDPEIVDEHDSDFSEDVSSVSIPFHDIFLVGHKKFFTTWLPFYGQ
Subjt:  MDSSKERVAPVFLERSSRSTRGKRMTKLLDEEIEEDELFWNQDALKEEEVDDEYEEDPEIVDEHDSDFSEDVSSVSIPFHDIFLVGHKKFFTTWLPFYGQ

Query:  DSEPEEEAENEADERTQTKKRLVSPGKTSSKDNNKKRAVSKIEESSKDEASTDHSTPPEHHDTPDDTEVERTEKKSTRTSAVVREAERDVIRSHNEGES
        DSEPEEEAENEADERTQTKKRLVSPGKTSSKDNNKKRAVSKIEESSKDEASTDHSTPPEHHDTPDDTEVERTEKKSTRTSAVVREAERDVIRSHNEGES
Subjt:  DSEPEEEAENEADERTQTKKRLVSPGKTSSKDNNKKRAVSKIEESSKDEASTDHSTPPEHHDTPDDTEVERTEKKSTRTSAVVREAERDVIRSHNEGES
XP_022970136.1 SWR1 complex subunit 2 [Cucurbita maxima]6.4e-5769.95Show/hide
Query:  MDSSKERVAPVFLERSSRSTRGKRMTKLLDEEIEEDELFWNQDALKEEEVDDEYEEDPEIVDEHDSDFSEDVSSVSIPFHDIFLVGHKKFFTTWLPFYGQ
        MDSSKE  A VFL+RSSR TRGKRMTKLLD+E+EEDELFWNQDALKE+EVDDEYEE+PE+ DE DSDF+ED                             
Subjt:  MDSSKERVAPVFLERSSRSTRGKRMTKLLDEEIEEDELFWNQDALKEEEVDDEYEEDPEIVDEHDSDFSEDVSSVSIPFHDIFLVGHKKFFTTWLPFYGQ

Query:  DSEPEEEAENEADERTQTKKRLVSPGKTSSKDNNKKRAVSKIEESSKDEASTDHSTPPEHHDTPDDTEVERTEKKSTRTSAVVREAERDVIRS
        +SEPEEEAENEADERTQTKKRL+ PGKT SK+ NKKR VSKIE+SSKDEASTD STPPEHHDTPDDTEVERT +KSTRTS +VR+AERD IR+
Subjt:  DSEPEEEAENEADERTQTKKRLVSPGKTSSKDNNKKRAVSKIEESSKDEASTDHSTPPEHHDTPDDTEVERTEKKSTRTSAVVREAERDVIRS
XP_038907261.1 SWR1 complex subunit 2 isoform X1 [Benincasa hispida]4.0e-5970.98Show/hide
Query:  MDSSKERVAPVFLERSSRSTRGKRMTKLLDEEIEEDELFWNQDALKEEEVDDEYEEDPEIVDEHDSDFSEDVSSVSIPFHDIFLVGHKKFFTTWLPFYGQ
        MDSSKE  APVFL+RSSR TRGKRMTKLLDEE+EEDELFWNQDALKE+EVDDEYEE+PE+ DE DSDF+ED                             
Subjt:  MDSSKERVAPVFLERSSRSTRGKRMTKLLDEEIEEDELFWNQDALKEEEVDDEYEEDPEIVDEHDSDFSEDVSSVSIPFHDIFLVGHKKFFTTWLPFYGQ

Query:  DSEPEEEAENEADERTQTKKRLVSPGKTSSKDNNKKRAVSKIEESSKDEASTDHSTPPEHHDTPDDTEVERTEKKSTRTSAVVREAERDVIRS
        +SEPEEEAENEADERTQTKKRL+ PGKTSSK+ NKKR VSK+E+ SKDEASTDHSTPPEHHDTPDDTEVERT +KSTRTS +VR+AERD IR+
Subjt:  DSEPEEEAENEADERTQTKKRLVSPGKTSSKDNNKKRAVSKIEESSKDEASTDHSTPPEHHDTPDDTEVERTEKKSTRTSAVVREAERDVIRS
XP_038907266.1 SWR1 complex subunit 2 isoform X2 [Benincasa hispida]4.0e-5970.98Show/hide
Query:  MDSSKERVAPVFLERSSRSTRGKRMTKLLDEEIEEDELFWNQDALKEEEVDDEYEEDPEIVDEHDSDFSEDVSSVSIPFHDIFLVGHKKFFTTWLPFYGQ
        MDSSKE  APVFL+RSSR TRGKRMTKLLDEE+EEDELFWNQDALKE+EVDDEYEE+PE+ DE DSDF+ED                             
Subjt:  MDSSKERVAPVFLERSSRSTRGKRMTKLLDEEIEEDELFWNQDALKEEEVDDEYEEDPEIVDEHDSDFSEDVSSVSIPFHDIFLVGHKKFFTTWLPFYGQ

Query:  DSEPEEEAENEADERTQTKKRLVSPGKTSSKDNNKKRAVSKIEESSKDEASTDHSTPPEHHDTPDDTEVERTEKKSTRTSAVVREAERDVIRS
        +SEPEEEAENEADERTQTKKRL+ PGKTSSK+ NKKR VSK+E+ SKDEASTDHSTPPEHHDTPDDTEVERT +KSTRTS +VR+AERD IR+
Subjt:  DSEPEEEAENEADERTQTKKRLVSPGKTSSKDNNKKRAVSKIEESSKDEASTDHSTPPEHHDTPDDTEVERTEKKSTRTSAVVREAERDVIRS
TrEMBL top hitse value%identityAlignment
A0A1S3CUJ8 SWR1 complex subunit 27.6e-5669.95Show/hide
Query:  MDSSKERVAPVFLERSSRSTRGKRMTKLLDEEIEEDELFWNQDALKEEEVDDEYEEDPEIVDEHDSDFSEDVSSVSIPFHDIFLVGHKKFFTTWLPFYGQ
        MDSSKE   PVFL+RSSR TRGKRMTKLLDEE EEDELFWNQDALKE+EVDDEYEE+PE+ DE DSDF+ED                             
Subjt:  MDSSKERVAPVFLERSSRSTRGKRMTKLLDEEIEEDELFWNQDALKEEEVDDEYEEDPEIVDEHDSDFSEDVSSVSIPFHDIFLVGHKKFFTTWLPFYGQ

Query:  DSEPEEEAENEADERTQTKKRLVSPGKTSSKDNNKKRAVSKIEESSKDEASTDHSTPPEHHDTPDDTEVERTEKKSTRTSAVVREAERDVIRS
        +SEPEEEAENEA+ERTQ KKRL+ PGKT SK+ NKKRAVSKIE+ SKDEASTDHSTPPEHHDTPDDTEVERT +KSTRTS +VR+AERD IR+
Subjt:  DSEPEEEAENEADERTQTKKRLVSPGKTSSKDNNKKRAVSKIEESSKDEASTDHSTPPEHHDTPDDTEVERTEKKSTRTSAVVREAERDVIRS
A0A5A7UJC3 SWR1 complex subunit 24.5e-5669.95Show/hide
Query:  MDSSKERVAPVFLERSSRSTRGKRMTKLLDEEIEEDELFWNQDALKEEEVDDEYEEDPEIVDEHDSDFSEDVSSVSIPFHDIFLVGHKKFFTTWLPFYGQ
        MDSSKE   PVFL+RSSR TRGKRMTKLLDEE EEDELFWNQDALKE+EVDDEYEE+PE+ DE DSDF+ED                             
Subjt:  MDSSKERVAPVFLERSSRSTRGKRMTKLLDEEIEEDELFWNQDALKEEEVDDEYEEDPEIVDEHDSDFSEDVSSVSIPFHDIFLVGHKKFFTTWLPFYGQ

Query:  DSEPEEEAENEADERTQTKKRLVSPGKTSSKDNNKKRAVSKIEESSKDEASTDHSTPPEHHDTPDDTEVERTEKKSTRTSAVVREAERDVIRS
        +SEPEEEAENEA+ERTQ KKRL+ PGKT SK+ NKKRAVSKIE+ SKDEASTDHSTPPEHHDTPDDTEVERT +KSTRTS +VR+AERD IR+
Subjt:  DSEPEEEAENEADERTQTKKRLVSPGKTSSKDNNKKRAVSKIEESSKDEASTDHSTPPEHHDTPDDTEVERTEKKSTRTSAVVREAERDVIRS
A0A6J1DZB8 SWR1 complex subunit 26.9e-5769.43Show/hide
Query:  MDSSKERVAPVFLERSSRSTRGKRMTKLLDEEIEEDELFWNQDALKEEEVDDEYEEDPEIVDEHDSDFSEDVSSVSIPFHDIFLVGHKKFFTTWLPFYGQ
        M+++KE  APVFL+RSSR TRGKRMT+LLDEE+EEDELFWNQ+ALKEEE DDEYEE+PEI DE DSDF+ED                             
Subjt:  MDSSKERVAPVFLERSSRSTRGKRMTKLLDEEIEEDELFWNQDALKEEEVDDEYEEDPEIVDEHDSDFSEDVSSVSIPFHDIFLVGHKKFFTTWLPFYGQ

Query:  DSEPEEEAENEADERTQTKKRLVSPGKTSSKDNNKKRAVSKIEESSKDEASTDHSTPPEHHDTPDDTEVERTEKKSTRTSAVVREAERDVIRS
        +SEPEEEAENEAD+RTQTKKRL+ PGKTSSK  NKKRAVSKIE  SKDEASTDHSTPPEHHDTPDDTEVERT +KSTRTS +VR+AERD IR+
Subjt:  DSEPEEEAENEADERTQTKKRLVSPGKTSSKDNNKKRAVSKIEESSKDEASTDHSTPPEHHDTPDDTEVERTEKKSTRTSAVVREAERDVIRS
A0A6J1EM84 SWR1 complex subunit 23.1e-5769.95Show/hide
Query:  MDSSKERVAPVFLERSSRSTRGKRMTKLLDEEIEEDELFWNQDALKEEEVDDEYEEDPEIVDEHDSDFSEDVSSVSIPFHDIFLVGHKKFFTTWLPFYGQ
        MDSSKE  A VFL+RSSR TRGKRMTKLLD+E+EEDELFWNQDALKE+EVDDEYEE+PE+ DE DSDF+ED                             
Subjt:  MDSSKERVAPVFLERSSRSTRGKRMTKLLDEEIEEDELFWNQDALKEEEVDDEYEEDPEIVDEHDSDFSEDVSSVSIPFHDIFLVGHKKFFTTWLPFYGQ

Query:  DSEPEEEAENEADERTQTKKRLVSPGKTSSKDNNKKRAVSKIEESSKDEASTDHSTPPEHHDTPDDTEVERTEKKSTRTSAVVREAERDVIRS
        +SEPEEEAENEADERTQTKKRL+ PGKT SK+ NKKR VSKIE+SSKDEASTD STPPEHHDTPDDTEVERT +KSTRTS +VR+AERD IR+
Subjt:  DSEPEEEAENEADERTQTKKRLVSPGKTSSKDNNKKRAVSKIEESSKDEASTDHSTPPEHHDTPDDTEVERTEKKSTRTSAVVREAERDVIRS
A0A6J1HZS7 SWR1 complex subunit 23.1e-5769.95Show/hide
Query:  MDSSKERVAPVFLERSSRSTRGKRMTKLLDEEIEEDELFWNQDALKEEEVDDEYEEDPEIVDEHDSDFSEDVSSVSIPFHDIFLVGHKKFFTTWLPFYGQ
        MDSSKE  A VFL+RSSR TRGKRMTKLLD+E+EEDELFWNQDALKE+EVDDEYEE+PE+ DE DSDF+ED                             
Subjt:  MDSSKERVAPVFLERSSRSTRGKRMTKLLDEEIEEDELFWNQDALKEEEVDDEYEEDPEIVDEHDSDFSEDVSSVSIPFHDIFLVGHKKFFTTWLPFYGQ

Query:  DSEPEEEAENEADERTQTKKRLVSPGKTSSKDNNKKRAVSKIEESSKDEASTDHSTPPEHHDTPDDTEVERTEKKSTRTSAVVREAERDVIRS
        +SEPEEEAENEADERTQTKKRL+ PGKT SK+ NKKR VSKIE+SSKDEASTD STPPEHHDTPDDTEVERT +KSTRTS +VR+AERD IR+
Subjt:  DSEPEEEAENEADERTQTKKRLVSPGKTSSKDNNKKRAVSKIEESSKDEASTDHSTPPEHHDTPDDTEVERTEKKSTRTSAVVREAERDVIRS
SwissProt top hitse value%identityAlignment
F4IP06 SWR1 complex subunit 24.6e-2644.97Show/hide
Query:  VFLERSSRSTRGKRMTKLLDEEIEEDELFWNQDALKEEEVDDEYEEDPEIVDEHDSDFSEDVSSVSIPFHDIFLVGHKKFFTTWLPFYGQDSEPEEEAEN
        VFL+R++R+TRGKRMTKLLD+E+EEDE FWNQ+ALKEEE DDEYE + E+ DE DSDF++D                             + EP+  A N
Subjt:  VFLERSSRSTRGKRMTKLLDEEIEEDELFWNQDALKEEEVDDEYEEDPEIVDEHDSDFSEDVSSVSIPFHDIFLVGHKKFFTTWLPFYGQDSEPEEEAEN

Query:  EADERTQTKKRLVSPGKTSSKDNNKK-RAVSKIE-----ESSKDEASTDHSTPPEHHDTPDDTEVERTEKKSTRTSAVVREAERDVIRS
        E + R   KKRL+ PGKT+SK   KK + VS++E     E   +E         E ++  +D E E+  +KSTRTS VVR+AERD +R+
Subjt:  EADERTQTKKRLVSPGKTSSKDNNKK-RAVSKIE-----ESSKDEASTDHSTPPEHHDTPDDTEVERTEKKSTRTSAVVREAERDVIRS
Arabidopsis top hitse value%identityAlignment
AT2G36740.1 sequence-specific DNA binding transcription factors;DNA binding;DNA binding3.3e-2744.97Show/hide
Query:  VFLERSSRSTRGKRMTKLLDEEIEEDELFWNQDALKEEEVDDEYEEDPEIVDEHDSDFSEDVSSVSIPFHDIFLVGHKKFFTTWLPFYGQDSEPEEEAEN
        VFL+R++R+TRGKRMTKLLD+E+EEDE FWNQ+ALKEEE DDEYE + E+ DE DSDF++D                             + EP+  A N
Subjt:  VFLERSSRSTRGKRMTKLLDEEIEEDELFWNQDALKEEEVDDEYEEDPEIVDEHDSDFSEDVSSVSIPFHDIFLVGHKKFFTTWLPFYGQDSEPEEEAEN

Query:  EADERTQTKKRLVSPGKTSSKDNNKK-RAVSKIE-----ESSKDEASTDHSTPPEHHDTPDDTEVERTEKKSTRTSAVVREAERDVIRS
        E + R   KKRL+ PGKT+SK   KK + VS++E     E   +E         E ++  +D E E+  +KSTRTS VVR+AERD +R+
Subjt:  EADERTQTKKRLVSPGKTSSKDNNKK-RAVSKIE-----ESSKDEASTDHSTPPEHHDTPDDTEVERTEKKSTRTSAVVREAERDVIRS

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTCATCGAAAGAAAGAGTTGCTCCCGTTTTTCTTGAGCGTTCTTCTCGGTCGACTAGAGGAAAGAGGATGACTAAATTGCTTGATGAGGAAATTGAAGAAGACGA
GTTGTTTTGGAATCAGGATGCTCTTAAAGAGGAGGAGGTTGATGATGAATACGAGGAAGATCCTGAGATTGTGGATGAACATGATAGTGATTTCAGTGAAGATGTGAGTT
CTGTTTCAATTCCTTTTCACGACATATTTCTGGTCGGCCATAAAAAGTTTTTCACAACATGGCTTCCTTTTTATGGACAGGACTCTGAACCAGAGGAAGAAGCTGAGAAT
GAAGCAGATGAGAGAACACAAACAAAGAAGCGATTAGTATCTCCCGGAAAGACTTCTTCCAAGGACAATAATAAAAAGAGAGCTGTTTCCAAAATTGAGGAATCATCCAA
AGATGAAGCATCAACCGATCACTCTACGCCTCCTGAACATCACGATACACCAGACGATACTGAAGTTGAGAGAACAGAGAAGAAGTCCACTAGAACTTCAGCTGTTGTTA
GAGAAGCTGAGAGGGATGTTATTCGTAGCCACAATGAAGGTGAGTCCTGA
mRNA sequenceShow/hide mRNA sequence
AAACATACATACATACATACATACATACATACATACATACATACATACATACATACATATATATATGGCAAAAACCTGGAGGGAAACAGGGTTGAGGTGGCGGGCTCTGG
AATTCGATCGAGTAGATTTTCCCGCGCTCCATCGTTAGATAACCCCAGATCGATTTAGCGTACTGTCCAGTTCCAGTAACCAGAAAATCATCGTAATCCGCTACCACTTT
TCGGCCATCGGTAGCCGCCAGTGATTTCCACAAGTCTTGAACTTCAATTTCCAGTATTCGTAAGTGGATTTTGTTTCCCAGCCATGGATTCATCGAAAGAAAGAGTTGCT
CCCGTTTTTCTTGAGCGTTCTTCTCGGTCGACTAGAGGAAAGAGGATGACTAAATTGCTTGATGAGGAAATTGAAGAAGACGAGTTGTTTTGGAATCAGGATGCTCTTAA
AGAGGAGGAGGTTGATGATGAATACGAGGAAGATCCTGAGATTGTGGATGAACATGATAGTGATTTCAGTGAAGATGTGAGTTCTGTTTCAATTCCTTTTCACGACATAT
TTCTGGTCGGCCATAAAAAGTTTTTCACAACATGGCTTCCTTTTTATGGACAGGACTCTGAACCAGAGGAAGAAGCTGAGAATGAAGCAGATGAGAGAACACAAACAAAG
AAGCGATTAGTATCTCCCGGAAAGACTTCTTCCAAGGACAATAATAAAAAGAGAGCTGTTTCCAAAATTGAGGAATCATCCAAAGATGAAGCATCAACCGATCACTCTAC
GCCTCCTGAACATCACGATACACCAGACGATACTGAAGTTGAGAGAACAGAGAAGAAGTCCACTAGAACTTCAGCTGTTGTTAGAGAAGCTGAGAGGGATGTTATTCGTA
GCCACAATGAAGGTGAGTCCTGAATACTTGAATATTTGATTTGTAGGATGAAGACCAAACGTTGTTCATTAGAGTAGCTTGAGTTTTTCTTGAAGGCAGTTTCTTGATTG
AATAGGGTGATGCTATGATGAAGTGGGAACACTTCATTTTGGTTCATATATCCTTAAGCTTCTTGAAAAACTTTCATGATCCTATGGATTCTTTAGTCAGCCATTATTCT
TTTCATGTCAATGACTAATCATTTCAATCTTTAGATCCATTCTGTGTCCAAGAAGAACACCAAAAATACAAAACAAAATCTTTTGAGTTACCCAGAATGAGTTTGTTCAG
GAGTAACTTTAAATTTTATGACACCCAAAATTTGGTTCTCCGTCCGTTTGGTTGTAGTGGTGTCTGGGGACATAAAATCTGTAATGGTTCATGATTCAAGCCCACCGGCA
AATATTGTCCTCTTTGAATTTTTTCCTTTCAGGCTTCCCCTCAAGGTTTTTTAAAATGTGTTTGCTAAGGAGGGGTTTCCACACCCTTATAAAGA
Protein sequenceShow/hide protein sequence
MDSSKERVAPVFLERSSRSTRGKRMTKLLDEEIEEDELFWNQDALKEEEVDDEYEEDPEIVDEHDSDFSEDVSSVSIPFHDIFLVGHKKFFTTWLPFYGQDSEPEEEAEN
EADERTQTKKRLVSPGKTSSKDNNKKRAVSKIEESSKDEASTDHSTPPEHHDTPDDTEVERTEKKSTRTSAVVREAERDVIRSHNEGES