; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg08513 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg08513
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionTumor necrosis factor receptor family protein
Genome locationCarg_Chr02:5249175..5252590
RNA-Seq ExpressionCarg08513
SyntenyCarg08513
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
GO:0008270 - zinc ion binding (molecular function)
GO:0016491 - oxidoreductase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6605625.1 hypothetical protein SDJN03_02942, partial [Cucurbita argyrosperma subsp. sororia]2.3e-7899.35Show/hide
Query:  MWWLRGIQTIRNADGGGGSAGLVFSTFARYFSRSRAENLRKINPKLTPQEASLVAQDLYGVVKQHGPLTVSNAWIKAQESGVGGLNSKTHMKLLLKWMRG
        MWWLRGIQTIRNADGGGGSAGLVFSTFAR FSRSRAENLRKINPKLTPQEASLVAQDLYGVVKQHGPLTVSNAWIKAQESGVGGLNSKTHMKLLLKWMRG
Subjt:  MWWLRGIQTIRNADGGGGSAGLVFSTFARYFSRSRAENLRKINPKLTPQEASLVAQDLYGVVKQHGPLTVSNAWIKAQESGVGGLNSKTHMKLLLKWMRG

Query:  RKMLQLFCNQVGSNKKFLLATPNDPRVEELKSASEPVVQRRKKQKAQIRRRKASK
        RKMLQLFCNQVGSNKKFLLATPNDPRVEELKSASEPVVQRRKKQKAQIRRRKASK
Subjt:  RKMLQLFCNQVGSNKKFLLATPNDPRVEELKSASEPVVQRRKKQKAQIRRRKASK

KAG7035535.1 hypothetical protein SDJN02_02332 [Cucurbita argyrosperma subsp. argyrosperma]2.1e-79100Show/hide
Query:  MWWLRGIQTIRNADGGGGSAGLVFSTFARYFSRSRAENLRKINPKLTPQEASLVAQDLYGVVKQHGPLTVSNAWIKAQESGVGGLNSKTHMKLLLKWMRG
        MWWLRGIQTIRNADGGGGSAGLVFSTFARYFSRSRAENLRKINPKLTPQEASLVAQDLYGVVKQHGPLTVSNAWIKAQESGVGGLNSKTHMKLLLKWMRG
Subjt:  MWWLRGIQTIRNADGGGGSAGLVFSTFARYFSRSRAENLRKINPKLTPQEASLVAQDLYGVVKQHGPLTVSNAWIKAQESGVGGLNSKTHMKLLLKWMRG

Query:  RKMLQLFCNQVGSNKKFLLATPNDPRVEELKSASEPVVQRRKKQKAQIRRRKASK
        RKMLQLFCNQVGSNKKFLLATPNDPRVEELKSASEPVVQRRKKQKAQIRRRKASK
Subjt:  RKMLQLFCNQVGSNKKFLLATPNDPRVEELKSASEPVVQRRKKQKAQIRRRKASK

XP_022958708.1 uncharacterized protein LOC111459852 [Cucurbita moschata]6.7e-7898.06Show/hide
Query:  MWWLRGIQTIRNADGGGGSAGLVFSTFARYFSRSRAENLRKINPKLTPQEASLVAQDLYGVVKQHGPLTVSNAWIKAQESGVGGLNSKTHMKLLLKWMRG
        MWWLRGIQTIRNADGGGGSAGLVFSTF RYFSRSRAENLRKINPKLTPQEASLVAQDLYGVVKQHGPLTVSNAWIKAQESGVGGLNSKTHMKLLLKWMRG
Subjt:  MWWLRGIQTIRNADGGGGSAGLVFSTFARYFSRSRAENLRKINPKLTPQEASLVAQDLYGVVKQHGPLTVSNAWIKAQESGVGGLNSKTHMKLLLKWMRG

Query:  RKMLQLFCNQVGSNKKFLLATPNDPRVEELKSASEPVVQRRKKQKAQIRRRKASK
        RKMLQLFCNQVGSNKKFLLATP+DPR EELKSASEPVVQRRKKQKAQIRRRKASK
Subjt:  RKMLQLFCNQVGSNKKFLLATPNDPRVEELKSASEPVVQRRKKQKAQIRRRKASK

XP_022996189.1 uncharacterized protein LOC111491495 [Cucurbita maxima]3.9e-7898.06Show/hide
Query:  MWWLRGIQTIRNADGGGGSAGLVFSTFARYFSRSRAENLRKINPKLTPQEASLVAQDLYGVVKQHGPLTVSNAWIKAQESGVGGLNSKTHMKLLLKWMRG
        MWWLRGIQTIRNADGGGGSAGLVFSTFARYFSRSRAENLRKINPKLTPQEASLVAQDLYGVVKQHGPLTVSNAWIKAQESGVGGLNSKTHMKLLLKWMRG
Subjt:  MWWLRGIQTIRNADGGGGSAGLVFSTFARYFSRSRAENLRKINPKLTPQEASLVAQDLYGVVKQHGPLTVSNAWIKAQESGVGGLNSKTHMKLLLKWMRG

Query:  RKMLQLFCNQVGSNKKFLLATPNDPRVEELKSASEPVVQRRKKQKAQIRRRKASK
        RKMLQLFCNQVGSNKKFLLATPNDPR EELKSASEPVVQRRKKQKA+IRR+KASK
Subjt:  RKMLQLFCNQVGSNKKFLLATPNDPRVEELKSASEPVVQRRKKQKAQIRRRKASK

XP_023534502.1 uncharacterized protein LOC111796041 [Cucurbita pepo subsp. pepo]8.2e-7696.18Show/hide
Query:  MWWLRGIQTIRNAD--GGGGSAGLVFSTFARYFSRSRAENLRKINPKLTPQEASLVAQDLYGVVKQHGPLTVSNAWIKAQESGVGGLNSKTHMKLLLKWM
        MWWLRGIQTIRNAD  GGGGSAGLVFSTFARYFSRSRAENLRKINPKLTP EASLVAQDLYGVVKQHGPLTVSNAWIKAQESGVGGLNSKTHMKLLLKWM
Subjt:  MWWLRGIQTIRNAD--GGGGSAGLVFSTFARYFSRSRAENLRKINPKLTPQEASLVAQDLYGVVKQHGPLTVSNAWIKAQESGVGGLNSKTHMKLLLKWM

Query:  RGRKMLQLFCNQVGSNKKFLLATPNDPRVEELKSASEPVVQRRKKQKAQIRRRKASK
        RGRKMLQLFCNQVGSNKKFLLATP+DPR EELKSASEPVVQRRKKQKAQIRRRK SK
Subjt:  RGRKMLQLFCNQVGSNKKFLLATPNDPRVEELKSASEPVVQRRKKQKAQIRRRKASK

TrEMBL top hitse value%identityAlignment
A0A0A0KK52 Uncharacterized protein1.6e-6180.39Show/hide
Query:  WLRGIQTIRNADGGGGSAGLVFSTFARYFSRSRAENLRKINPKLTPQEASLVAQDLYGVVKQHGPLTVSNAWIKAQESGVGGLNSKTHMKLLLKWMRGRK
        W R IQ I NADGGGG AGLVF+TFAR+FSR RAENLRKINPKLTPQEASLVAQDLYGVV+QHGPLT+SNAWIKAQESGV GLNSKTHMKLLLKWMRGRK
Subjt:  WLRGIQTIRNADGGGGSAGLVFSTFARYFSRSRAENLRKINPKLTPQEASLVAQDLYGVVKQHGPLTVSNAWIKAQESGVGGLNSKTHMKLLLKWMRGRK

Query:  MLQLFCNQVGSNKKFLLATPNDPRVEELKSASEPVVQRRKKQKAQIRRRKASK
        ML LFC+ VGSNKKFLL TP+DPR EELK++SE   QR+K+ K+  +RRK SK
Subjt:  MLQLFCNQVGSNKKFLLATPNDPRVEELKSASEPVVQRRKKQKAQIRRRKASK

A0A1S3ATS9 uncharacterized protein LOC1034828888.8e-6078.43Show/hide
Query:  WLRGIQTIRNADGGGGSAGLVFSTFARYFSRSRAENLRKINPKLTPQEASLVAQDLYGVVKQHGPLTVSNAWIKAQESGVGGLNSKTHMKLLLKWMRGRK
        W R IQ I N DGGGG  GLVF+TFAR+FSR RAENLRKINPKLTPQEASLVAQDLYGV++QHGPLTVSNAWIKAQESGV GLNSKTHMKLLLKWMRGR+
Subjt:  WLRGIQTIRNADGGGGSAGLVFSTFARYFSRSRAENLRKINPKLTPQEASLVAQDLYGVVKQHGPLTVSNAWIKAQESGVGGLNSKTHMKLLLKWMRGRK

Query:  MLQLFCNQVGSNKKFLLATPNDPRVEELKSASEPVVQRRKKQKAQIRRRKASK
        ML LFC+ VGSNKKFLL TP+DPR EELK+ SE   QR+K+ K+  +RRK SK
Subjt:  MLQLFCNQVGSNKKFLLATPNDPRVEELKSASEPVVQRRKKQKAQIRRRKASK

A0A6J1E538 uncharacterized protein LOC1110261273.6e-6181.17Show/hide
Query:  WLRGIQTIRNADGGGGSAGLVFSTFARYFSRSRAENLRKINPKLTPQEASLVAQDLYGVVKQHGPLTVSNAWIKAQESGVGGLNSKTHMKLLLKWMRGRK
        WLRG Q I +ADGGGGSAGLVFSTFARYFSR RAENLRKINPKLTPQEASLVAQDLYGVVKQHGPL++SNAWIKAQE GV GLNSKTHMKL+LKWMRGRK
Subjt:  WLRGIQTIRNADGGGGSAGLVFSTFARYFSRSRAENLRKINPKLTPQEASLVAQDLYGVVKQHGPLTVSNAWIKAQESGVGGLNSKTHMKLLLKWMRGRK

Query:  MLQLFCNQVGSNKKFLLAT-PNDPRVEELKSASEPVVQRRKKQKAQIRRRKASK
        ML+L CNQVGSNKKFLL+T P+DP+ ++LKS+SE  VQR K+ K   RRRK SK
Subjt:  MLQLFCNQVGSNKKFLLAT-PNDPRVEELKSASEPVVQRRKKQKAQIRRRKASK

A0A6J1H3U5 uncharacterized protein LOC1114598523.2e-7898.06Show/hide
Query:  MWWLRGIQTIRNADGGGGSAGLVFSTFARYFSRSRAENLRKINPKLTPQEASLVAQDLYGVVKQHGPLTVSNAWIKAQESGVGGLNSKTHMKLLLKWMRG
        MWWLRGIQTIRNADGGGGSAGLVFSTF RYFSRSRAENLRKINPKLTPQEASLVAQDLYGVVKQHGPLTVSNAWIKAQESGVGGLNSKTHMKLLLKWMRG
Subjt:  MWWLRGIQTIRNADGGGGSAGLVFSTFARYFSRSRAENLRKINPKLTPQEASLVAQDLYGVVKQHGPLTVSNAWIKAQESGVGGLNSKTHMKLLLKWMRG

Query:  RKMLQLFCNQVGSNKKFLLATPNDPRVEELKSASEPVVQRRKKQKAQIRRRKASK
        RKMLQLFCNQVGSNKKFLLATP+DPR EELKSASEPVVQRRKKQKAQIRRRKASK
Subjt:  RKMLQLFCNQVGSNKKFLLATPNDPRVEELKSASEPVVQRRKKQKAQIRRRKASK

A0A6J1K817 uncharacterized protein LOC1114914951.9e-7898.06Show/hide
Query:  MWWLRGIQTIRNADGGGGSAGLVFSTFARYFSRSRAENLRKINPKLTPQEASLVAQDLYGVVKQHGPLTVSNAWIKAQESGVGGLNSKTHMKLLLKWMRG
        MWWLRGIQTIRNADGGGGSAGLVFSTFARYFSRSRAENLRKINPKLTPQEASLVAQDLYGVVKQHGPLTVSNAWIKAQESGVGGLNSKTHMKLLLKWMRG
Subjt:  MWWLRGIQTIRNADGGGGSAGLVFSTFARYFSRSRAENLRKINPKLTPQEASLVAQDLYGVVKQHGPLTVSNAWIKAQESGVGGLNSKTHMKLLLKWMRG

Query:  RKMLQLFCNQVGSNKKFLLATPNDPRVEELKSASEPVVQRRKKQKAQIRRRKASK
        RKMLQLFCNQVGSNKKFLLATPNDPR EELKSASEPVVQRRKKQKA+IRR+KASK
Subjt:  RKMLQLFCNQVGSNKKFLLATPNDPRVEELKSASEPVVQRRKKQKAQIRRRKASK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G73940.1 unknown protein1.2e-3252.03Show/hide
Query:  ADGGGG-----SAGLVF-------STFARYFSRSRAENLRKINPKLTPQEASLVAQDLYGVVKQHGPLTVSNAWIKAQESGVGGLNSKTHMKLLLKWMRG
        A GGGG      A  +F       S   RY SR RA N+RKINPK+  QEA  ++  LY + K HGPL+V N W++AQE+GV GLNSKTHMKLLLKWMRG
Subjt:  ADGGGG-----SAGLVF-------STFARYFSRSRAENLRKINPKLTPQEASLVAQDLYGVVKQHGPLTVSNAWIKAQESGVGGLNSKTHMKLLLKWMRG

Query:  RKMLQLFCNQVGSNKKFL-LATPNDPRVEELKSASEPVVQRRKKQKAQ
        +KML+L CNQVGS+KKF     P DP  E+  +  E   Q  KK++++
Subjt:  RKMLQLFCNQVGSNKKFL-LATPNDPRVEELKSASEPVVQRRKKQKAQ

AT5G49410.1 unknown protein8.3e-1836.36Show/hide
Query:  VFSTFARYFSRSRAENLRKINPKLTPQEASLVAQDLYGVVKQHGPLTVSNAWIKAQESGVGGLNSKTHMKLLLKWMRGRKMLQLFCNQVGSNKKFLLAT
        V     R+F+      ++ I     P++   + + ++ ++K HGPLT++  W + +E G+ GL SK HMK++L+WMR R+ L+L CN VG +K+FL  T
Subjt:  VFSTFARYFSRSRAENLRKINPKLTPQEASLVAQDLYGVVKQHGPLTVSNAWIKAQESGVGGLNSKTHMKLLLKWMRGRKMLQLFCNQVGSNKKFLLAT

AT5G49410.2 unknown protein8.3e-1836.36Show/hide
Query:  VFSTFARYFSRSRAENLRKINPKLTPQEASLVAQDLYGVVKQHGPLTVSNAWIKAQESGVGGLNSKTHMKLLLKWMRGRKMLQLFCNQVGSNKKFLLAT
        V     R+F+      ++ I     P++   + + ++ ++K HGPLT++  W + +E G+ GL SK HMK++L+WMR R+ L+L CN VG +K+FL  T
Subjt:  VFSTFARYFSRSRAENLRKINPKLTPQEASLVAQDLYGVVKQHGPLTVSNAWIKAQESGVGGLNSKTHMKLLLKWMRGRKMLQLFCNQVGSNKKFLLAT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGTGGCTTCGCGGTATTCAAACAATTAGAAATGCAGATGGAGGTGGAGGTTCTGCTGGCCTTGTTTTCAGCACATTCGCGAGGTATTTCTCGAGGTCGCGAGCAGA
GAATCTTAGGAAAATCAATCCCAAGTTGACCCCTCAGGAGGCTTCTTTGGTTGCTCAAGATCTCTATGGTGTCGTCAAGCAGCATGGACCGCTCACAGTTTCCAATGCTT
GGATTAAAGCTCAGGAATCTGGCGTGGGTGGATTGAACAGCAAAACACACATGAAGCTGTTGCTGAAATGGATGAGGGGAAGGAAGATGCTGCAGCTTTTCTGCAACCAA
GTTGGTTCGAACAAGAAATTTCTGCTCGCCACGCCCAATGATCCTCGAGTAGAAGAGTTGAAGAGTGCTTCAGAACCAGTAGTCCAGAGACGAAAGAAACAGAAGGCACA
AATAAGGAGGAGAAAGGCATCAAAATAA
mRNA sequenceShow/hide mRNA sequence
ATGAGTAAAGAAAAACCCTGCGTGTCTAATTCTGTTCGTTCGTCGTCGACTCTCTTCGAATCTCAGTGCCTTGGCGGCAGCGGGATACCAGTGCAACAGCGCGCAGTTGT
AGCCATAGACGAATAGTGGGAGAATTTTGTACCACGAAGTAGTGCGGTAGACTAGCATCAGATATGTGGTGGCTTCGCGGTATTCAAACAATTAGAAATGCAGATGGAGG
TGGAGGTTCTGCTGGCCTTGTTTTCAGCACATTCGCGAGGTATTTCTCGAGGTCGCGAGCAGAGAATCTTAGGAAAATCAATCCCAAGTTGACCCCTCAGGAGGCTTCTT
TGGTTGCTCAAGATCTCTATGGTGTCGTCAAGCAGCATGGACCGCTCACAGTTTCCAATGCTTGGATTAAAGCTCAGGAATCTGGCGTGGGTGGATTGAACAGCAAAACA
CACATGAAGCTGTTGCTGAAATGGATGAGGGGAAGGAAGATGCTGCAGCTTTTCTGCAACCAAGTTGGTTCGAACAAGAAATTTCTGCTCGCCACGCCCAATGATCCTCG
AGTAGAAGAGTTGAAGAGTGCTTCAGAACCAGTAGTCCAGAGACGAAAGAAACAGAAGGCACAAATAAGGAGGAGAAAGGCATCAAAATAAACTTTTGCCAACGTCCACG
AGTTTACGATGCAGTCGATGGGACTGCCCTCGGACTTGTTAGTACTGATGGCGCGCTCACGACTTATGACGATGAATTTATGAGTTTCTGCCATCACCGTTTTCCCCCAA
ATTTCAACTCTTTTGGGTGTTATGCAAGGTTTCTTTTGAACATTTCACGTTGACTTGGTTTCCATGCATCGACTGACAAACATGCATTTGAATCGTGGTTGATAAAACAG
CATGGATTAGGATGTCTCATTGGATTAAACAATTTAAGTCAGAATAAAAATCTTGAATTTTT
Protein sequenceShow/hide protein sequence
MWWLRGIQTIRNADGGGGSAGLVFSTFARYFSRSRAENLRKINPKLTPQEASLVAQDLYGVVKQHGPLTVSNAWIKAQESGVGGLNSKTHMKLLLKWMRGRKMLQLFCNQ
VGSNKKFLLATPNDPRVEELKSASEPVVQRRKKQKAQIRRRKASK