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Carg08522 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg08522
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionRING-type domain-containing protein
Genome locationCarg_Chr02:5194041..5194511
RNA-Seq ExpressionCarg08522
SyntenyCarg08522
Gene Ontology termsGO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6605615.1 hypothetical protein SDJN03_02932, partial [Cucurbita argyrosperma subsp. sororia]1.1e-5692.97Show/hide
Query:  FLNFAINGQRSSQILHLFTRILLQFKLLAAHFGLIKPSPENVAESPFERPTSYVLLTEGRYPSLVTVPAVDLQARIKTSLPIIEYGDFVEKQGRVSPENK
        FLNFAINGQRSSQ       ILLQFKLLAAHFGLIKPSPENVAESPFERPTSYVLLTEGRYPSLVTVPAVDLQARIKTSLPIIEYGDFVEKQGRVSPENK
Subjt:  FLNFAINGQRSSQILHLFTRILLQFKLLAAHFGLIKPSPENVAESPFERPTSYVLLTEGRYPSLVTVPAVDLQARIKTSLPIIEYGDFVEKQGRVSPENK

Query:  VDEENRKCTICLCEMERSETMRELSNCC
        VDEENRKCTICLCEMERSETMRELS  C
Subjt:  VDEENRKCTICLCEMERSETMRELSNCC

KAG7035527.1 hypothetical protein SDJN02_02323, partial [Cucurbita argyrosperma subsp. argyrosperma]5.3e-83100Show/hide
Query:  MGFLNFAINGQRSSQILHLFTRILLQFKLLAAHFGLIKPSPENVAESPFERPTSYVLLTEGRYPSLVTVPAVDLQARIKTSLPIIEYGDFVEKQGRVSPE
        MGFLNFAINGQRSSQILHLFTRILLQFKLLAAHFGLIKPSPENVAESPFERPTSYVLLTEGRYPSLVTVPAVDLQARIKTSLPIIEYGDFVEKQGRVSPE
Subjt:  MGFLNFAINGQRSSQILHLFTRILLQFKLLAAHFGLIKPSPENVAESPFERPTSYVLLTEGRYPSLVTVPAVDLQARIKTSLPIIEYGDFVEKQGRVSPE

Query:  NKVDEENRKCTICLCEMERSETMRELSNCCHVFHRYWISGLMSFGLLALFVDPCLI
        NKVDEENRKCTICLCEMERSETMRELSNCCHVFHRYWISGLMSFGLLALFVDPCLI
Subjt:  NKVDEENRKCTICLCEMERSETMRELSNCCHVFHRYWISGLMSFGLLALFVDPCLI

XP_022996076.1 RING-H2 finger protein ATL46-like [Cucurbita maxima]6.1e-6392.65Show/hide
Query:  MGFLNFAINGQRSSQILH-LFTRILLQFKLLAAHFGLIKPSPENVAESPFERPTSYVLLTEGRYPSLVTVPAVDLQARIKTSLPIIEYGDFVEKQGRVSP
        MGFL+FAIN Q SSQILH  FTRILLQFKLLAAHFGLIKPSPE VA+SPFERPTSYVLLTEGRYPSLVTVPAVDLQ RIKTSLPIIEYGDFVEKQGR SP
Subjt:  MGFLNFAINGQRSSQILH-LFTRILLQFKLLAAHFGLIKPSPENVAESPFERPTSYVLLTEGRYPSLVTVPAVDLQARIKTSLPIIEYGDFVEKQGRVSP

Query:  ENKVDEENRKCTICLCEMERSETMRELSNCCHVFHR
        ENKVDEENRKCTICLCEMERSETMREL NCCHVFHR
Subjt:  ENKVDEENRKCTICLCEMERSETMRELSNCCHVFHR

XP_023533023.1 RING-H2 finger protein ATL2-like [Cucurbita pepo subsp. pepo]9.1e-6797.01Show/hide
Query:  MGFLNFAINGQRSSQILHLFTRILLQFKLLAAHFGLIKPSPENVAESPFERPTSYVLLTEGRYPSLVTVPAVDLQARIKTSLPIIEYGDFVEKQGRVSPE
        MGFL+FAINGQRSSQILHLFTRILLQFKLLAAHFGLIKPSPE+VAESPFERPTSYVLLTEGRYPSLVTVPAVDLQARIKTSLPIIEYGDFVEKQGR SPE
Subjt:  MGFLNFAINGQRSSQILHLFTRILLQFKLLAAHFGLIKPSPENVAESPFERPTSYVLLTEGRYPSLVTVPAVDLQARIKTSLPIIEYGDFVEKQGRVSPE

Query:  NKVDEENRKCTICLCEMERSETMRELSNCCHVFH
         KVDEENRKCTICLCEMERSETMRELSNCCHVFH
Subjt:  NKVDEENRKCTICLCEMERSETMRELSNCCHVFH

XP_038907243.1 RING-H2 finger protein ATL2-like [Benincasa hispida]3.4e-4570.37Show/hide
Query:  MGFLNFAINGQRSSQILHLFTRILLQFKLLAAHFGLIKPSPENVAESPFERPTSYVLLTEGRYPSLVTVPAVDLQARIKTSLPIIEYGDFVEKQGRVSPE
        MGFL F+IN    SQILH FT ILLQ KLLAAHF L+K SPE+ A+SPF+RPTS+V LTEG   SLVTVPA DLQ RIK SLPI+ + DF+ KQG    E
Subjt:  MGFLNFAINGQRSSQILHLFTRILLQFKLLAAHFGLIKPSPENVAESPFERPTSYVLLTEGRYPSLVTVPAVDLQARIKTSLPIIEYGDFVEKQGRVSPE

Query:  NKVDEENRKCTICLCEMERSETMRELSNCCHVFHR
        N+ DEENR CT+CLCEMERSE+MREL NCCHVFHR
Subjt:  NKVDEENRKCTICLCEMERSETMRELSNCCHVFHR

TrEMBL top hitse value%identityAlignment
A0A2Z7BRP5 RING-type domain-containing protein1.1e-1436.5Show/hide
Query:  MGFLNFAINGQRSSQI--LHLFTRILLQFKLLAAHFGLIKPSPENVAESPFERPTSYVLLTEGRYPSLVTVPAVDLQARIKTSLPIIEYGDFVEKQGRVS
        MGFL  AI  +  +    L + T +   F +     G+ KP PE   E P  R  +Y+ + +G  PSLV +P   + A IK  +PII+Y D  ++ G + 
Subjt:  MGFLNFAINGQRSSQI--LHLFTRILLQFKLLAAHFGLIKPSPENVAESPFERPTSYVLLTEGRYPSLVTVPAVDLQARIKTSLPIIEYGDFVEKQGRVS

Query:  PENKVDEENRKCTICLCEMERSETMRELSNCCHVFHR
             D +   CT+CL  +  S+ +RELSNC HVFHR
Subjt:  PENKVDEENRKCTICLCEMERSETMRELSNCCHVFHR

A0A5B7BME5 Putative Brassinosteroid-responsive RING-H28.7e-1535.71Show/hide
Query:  FKLLAAHFGLIKPSP---ENVAESPFERPTSYVLLTEGRYPSLVTVPAVDLQARIKTSLPIIEYGDFVEKQGRV--SPENKVDEENRKCTICLCEMERSE
        F +   H G++K +P   E   E  F    S +++ +G  PSLV +P   + A IK  LP+++YGDF EK+  +    + +++EE++ C +CL  +E   
Subjt:  FKLLAAHFGLIKPSP---ENVAESPFERPTSYVLLTEGRYPSLVTVPAVDLQARIKTSLPIIEYGDFVEKQGRV--SPENKVDEENRKCTICLCEMERSE

Query:  TMRELSNCCHVFHRYWISGLMSFGLL
         +REL NCCHVFHR  +   +  G L
Subjt:  TMRELSNCCHVFHRYWISGLMSFGLL

A0A6J1AZI3 E3 ubiquitin-protein ligase RHA2B-like1.0e-1543.9Show/hide
Query:  ILHLFTRILLQFKLLAAHFGLIKPSPENVAESPFERPT---SYVLLTEGRYPSLVTVPAVDLQARIKTSLPIIEYGDFVEKQGRVSPENKVDEENRKCTI
        +L+L       FK    H GL+KP PE   E  +   T   +YVL+ +GR  SLV VP   + A IK SLP++EYG F+E+ G    ++K  E N  CT+
Subjt:  ILHLFTRILLQFKLLAAHFGLIKPSPENVAESPFERPT---SYVLLTEGRYPSLVTVPAVDLQARIKTSLPIIEYGDFVEKQGRVSPENKVDEENRKCTI

Query:  CLCEMERSETMRELSNCCHVFHR
        CL  ME+SE +R L  CCHVFH+
Subjt:  CLCEMERSETMRELSNCCHVFHR

A0A6J1E009 RING-H2 finger protein ATL2-like2.6e-3558.45Show/hide
Query:  MGFLNFAINGQRSSQILHLFTRILLQFKLLAAHFGLIKPSPENV--AESPFERPTSYVLLTEGRYPSLVTVPAVDLQARIKTSLPIIEYGDFVEKQGRVS
        MGFL FAING R SQILH FT I  + K L  + G++KP P+    A+   +RPTSYV +TEG  PSLVTVPA DLQARIK SLPI+E+GDF  K G + 
Subjt:  MGFLNFAINGQRSSQILHLFTRILLQFKLLAAHFGLIKPSPENV--AESPFERPTSYVLLTEGRYPSLVTVPAVDLQARIKTSLPIIEYGDFVEKQGRVS

Query:  -----PENKVDEENRKCTICLCEMERSETMRELSNCCHVFHR
              E + +EE  +CTICL +ME+SE MRELSNCCHVFH+
Subjt:  -----PENKVDEENRKCTICLCEMERSETMRELSNCCHVFHR

A0A6J1K3P6 RING-H2 finger protein ATL46-like3.0e-6392.65Show/hide
Query:  MGFLNFAINGQRSSQILH-LFTRILLQFKLLAAHFGLIKPSPENVAESPFERPTSYVLLTEGRYPSLVTVPAVDLQARIKTSLPIIEYGDFVEKQGRVSP
        MGFL+FAIN Q SSQILH  FTRILLQFKLLAAHFGLIKPSPE VA+SPFERPTSYVLLTEGRYPSLVTVPAVDLQ RIKTSLPIIEYGDFVEKQGR SP
Subjt:  MGFLNFAINGQRSSQILH-LFTRILLQFKLLAAHFGLIKPSPENVAESPFERPTSYVLLTEGRYPSLVTVPAVDLQARIKTSLPIIEYGDFVEKQGRVSP

Query:  ENKVDEENRKCTICLCEMERSETMRELSNCCHVFHR
        ENKVDEENRKCTICLCEMERSETMREL NCCHVFHR
Subjt:  ENKVDEENRKCTICLCEMERSETMRELSNCCHVFHR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G34990.1 RING/U-box superfamily protein1.8e-0430.23Show/hide
Query:  TEGRYPSLVTVPAV-DLQARIKTSLPIIEYGDFVEKQGRVSPENKVDEENRKCTICLCEMERSETMRELSNCCHVFHRYWISGLMS
        T+    S  ++ AV  L   I  S P   Y +  E+        ++     +C +C+CE E  ET+R +  CCHVFH   +S  +S
Subjt:  TEGRYPSLVTVPAV-DLQARIKTSLPIIEYGDFVEKQGRVSPENKVDEENRKCTICLCEMERSETMRELSNCCHVFHRYWISGLMS

AT2G35000.1 RING/U-box superfamily protein4.0e-0457.69Show/hide
Query:  KCTICLCEMERSETMRELSNCCHVFH
        +C +CLCE E  ET+R +  CCHVFH
Subjt:  KCTICLCEMERSETMRELSNCCHVFH

AT3G43430.1 RING/U-box superfamily protein4.0e-0439.39Show/hide
Query:  PAVDLQARIKTSLPIIEYGDFVEKQGRVSPENKVDEENRKCTICLCEMERSETMRELSNCCHVFHR
        P++  Q  IK SL +  + D VE+    SP       N  C +CL ++E  + +REL NC HVFHR
Subjt:  PAVDLQARIKTSLPIIEYGDFVEKQGRVSPENKVDEENRKCTICLCEMERSETMRELSNCCHVFHR

AT5G20885.1 RING/U-box superfamily protein2.4e-0432Show/hide
Query:  PAVDLQARIKTSLPIIEYGDFVEKQGRVSPENKVDEENRKCTICLCEMERSETMRELSNCCHVFHRYWISGLMSF
        P++  QA IK SL +  + D  E+   +         N  C +CL ++E  + +REL NC H+FHR  I   + +
Subjt:  PAVDLQARIKTSLPIIEYGDFVEKQGRVSPENKVDEENRKCTICLCEMERSETMRELSNCCHVFHRYWISGLMSF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGTTCCTCAATTTCGCCATTAACGGCCAAAGAAGCTCTCAAATCCTCCATCTCTTCACCAGAATCCTCCTCCAATTCAAGCTTCTCGCTGCTCATTTCGGCCTCAT
CAAGCCCTCGCCGGAGAATGTCGCTGAGTCTCCCTTCGAGCGCCCTACAAGCTACGTGTTGCTCACCGAGGGCCGCTACCCCTCACTGGTCACTGTCCCGGCCGTGGATT
TACAGGCCAGGATCAAGACCAGCCTTCCGATCATCGAGTATGGGGATTTTGTTGAAAAACAGGGGAGGGTGTCGCCGGAAAATAAGGTGGATGAAGAGAATCGAAAGTGT
ACGATCTGTTTGTGTGAAATGGAGAGATCGGAGACGATGAGAGAGCTCTCTAATTGCTGCCATGTCTTCCATCGGTATTGGATAAGTGGATTGATGAGTTTCGGATTACT
TGCCCTGTTTGTAGATCCATGCTTGATTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGGTTCCTCAATTTCGCCATTAACGGCCAAAGAAGCTCTCAAATCCTCCATCTCTTCACCAGAATCCTCCTCCAATTCAAGCTTCTCGCTGCTCATTTCGGCCTCAT
CAAGCCCTCGCCGGAGAATGTCGCTGAGTCTCCCTTCGAGCGCCCTACAAGCTACGTGTTGCTCACCGAGGGCCGCTACCCCTCACTGGTCACTGTCCCGGCCGTGGATT
TACAGGCCAGGATCAAGACCAGCCTTCCGATCATCGAGTATGGGGATTTTGTTGAAAAACAGGGGAGGGTGTCGCCGGAAAATAAGGTGGATGAAGAGAATCGAAAGTGT
ACGATCTGTTTGTGTGAAATGGAGAGATCGGAGACGATGAGAGAGCTCTCTAATTGCTGCCATGTCTTCCATCGGTATTGGATAAGTGGATTGATGAGTTTCGGATTACT
TGCCCTGTTTGTAGATCCATGCTTGATTTGA
Protein sequenceShow/hide protein sequence
MGFLNFAINGQRSSQILHLFTRILLQFKLLAAHFGLIKPSPENVAESPFERPTSYVLLTEGRYPSLVTVPAVDLQARIKTSLPIIEYGDFVEKQGRVSPENKVDEENRKC
TICLCEMERSETMRELSNCCHVFHRYWISGLMSFGLLALFVDPCLI