; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg08574 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg08574
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionexosome complex component RRP41-like
Genome locationCarg_Chr02:4887827..4890589
RNA-Seq ExpressionCarg08574
SyntenyCarg08574
Gene Ontology termsGO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0071051 - polyadenylation-dependent snoRNA 3'-end processing (biological process)
GO:0071028 - nuclear mRNA surveillance (biological process)
GO:0009845 - seed germination (biological process)
GO:0016075 - rRNA catabolic process (biological process)
GO:0034475 - U4 snRNA 3'-end processing (biological process)
GO:0034427 - nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' (biological process)
GO:0000177 - cytoplasmic exosome (RNase complex) (cellular component)
GO:0005730 - nucleolus (cellular component)
GO:0000176 - nuclear exosome (RNase complex) (cellular component)
GO:0016740 - transferase activity (molecular function)
GO:0008408 - 3'-5' exonuclease activity (molecular function)
InterPro domainsIPR001247 - Exoribonuclease, phosphorolytic domain 1
IPR015847 - Exoribonuclease, phosphorolytic domain 2
IPR020568 - Ribosomal protein S5 domain 2-type fold
IPR027408 - PNPase/RNase PH domain superfamily
IPR036345 - Exoribonuclease, PH domain 2 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6570792.1 Exosome complex component RRP41-like protein, partial [Cucurbita argyrosperma subsp. sororia]5.4e-12590.35Show/hide
Query:  MAKKATPATTTYSPSPTTHKTRPPIFRSDDVDWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
        MAKKATPAT+TYSPSPTTHKTRPPIFRSDDVDWVRPDGR FHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
Subjt:  MAKKATPATTTYSPSPTTHKTRPPIFRSDDVDWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT

Query:  FSTSIRGQVDQKTRSSLHLLHKALEGAIILEMFPKTTVDVFALVLESGGSELPVMISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENYEDG
        FST +RGQ  +    S  +LHKALEGAIILE FPKTTVDVFALVLESGGS+LPV+ISCASLALADAGIMLYDLVASVSVSCFGKNLLIDP LEEENY+DG
Subjt:  FSTSIRGQVDQKTRSSLHLLHKALEGAIILEMFPKTTVDVFALVLESGGSELPVMISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENYEDG

Query:  SLMITCMPSRYELTQLTITGQWSTAKINEGMQLCVDASCKLVKIMRSCLKES-ATISEE
        SLMITCMPSRYE+TQLTITG+WSTAKINEGMQLC+DASCKLV IMRSCLKES AT+SEE
Subjt:  SLMITCMPSRYELTQLTITGQWSTAKINEGMQLCVDASCKLVKIMRSCLKES-ATISEE

KAG7035475.1 Exosome complex component RRP41-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma]3.5e-140100Show/hide
Query:  MAKKATPATTTYSPSPTTHKTRPPIFRSDDVDWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
        MAKKATPATTTYSPSPTTHKTRPPIFRSDDVDWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
Subjt:  MAKKATPATTTYSPSPTTHKTRPPIFRSDDVDWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT

Query:  FSTSIRGQVDQKTRSSLHLLHKALEGAIILEMFPKTTVDVFALVLESGGSELPVMISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENYEDG
        FSTSIRGQVDQKTRSSLHLLHKALEGAIILEMFPKTTVDVFALVLESGGSELPVMISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENYEDG
Subjt:  FSTSIRGQVDQKTRSSLHLLHKALEGAIILEMFPKTTVDVFALVLESGGSELPVMISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENYEDG

Query:  SLMITCMPSRYELTQLTITGQWSTAKINEGMQLCVDASCKLVKIMRSCLKESATISEE
        SLMITCMPSRYELTQLTITGQWSTAKINEGMQLCVDASCKLVKIMRSCLKESATISEE
Subjt:  SLMITCMPSRYELTQLTITGQWSTAKINEGMQLCVDASCKLVKIMRSCLKESATISEE

XP_022140702.1 exosome complex component RRP41-like [Momordica charantia]2.9e-12689.92Show/hide
Query:  MAKKATPATTTYSPSPTTHKTRPPIFRSDDVDWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
        MAKKATPATTTYSPSPT HKTRPPIFRSD+ DWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
Subjt:  MAKKATPATTTYSPSPTTHKTRPPIFRSDDVDWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT

Query:  FSTSIRGQVDQKTRSSLHLLHKALEGAIILEMFPKTTVDVFALVLESGGSELPVMISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENYEDG
        F+T +RGQ  +    S  +LHKALEGAIILE FPKTTVD+FALVLESGGS+LPV+ISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENY+DG
Subjt:  FSTSIRGQVDQKTRSSLHLLHKALEGAIILEMFPKTTVDVFALVLESGGSELPVMISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENYEDG

Query:  SLMITCMPSRYELTQLTITGQWSTAKINEGMQLCVDASCKLVKIMRSCLKESATISEE
        SLMITCMPSRYE+TQLTITG+WSTAKINEGMQLC+DASCKLVKIMRSCLKESATIS++
Subjt:  SLMITCMPSRYELTQLTITGQWSTAKINEGMQLCVDASCKLVKIMRSCLKESATISEE

XP_023534484.1 exosome complex component RRP41-like isoform X1 [Cucurbita pepo subsp. pepo]3.2e-12591.15Show/hide
Query:  MAKKATPATTTYSPSPTTHKTRPPIFRSDDVDWVRPDGRGFHQCRPAF--FRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSY
        MAKKATPATTTYSPSPTTHKTRPPIFRSDDVDWVRPDGRGFHQCRPA+  FRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDI RLNCSVSY
Subjt:  MAKKATPATTTYSPSPTTHKTRPPIFRSDDVDWVRPDGRGFHQCRPAF--FRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSY

Query:  TTFSTSIRGQVDQKTRSSLHLLHKALEGAIILEMFPKTTVDVFALVLESGGSELPVMISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENYE
        +TFST +RGQ  +    S  +LHKALEGAIILEMFPKTTVDVFALVLESGG +LPV+ISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENYE
Subjt:  TTFSTSIRGQVDQKTRSSLHLLHKALEGAIILEMFPKTTVDVFALVLESGGSELPVMISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENYE

Query:  DGSLMITCMPSRYELTQLTITGQWSTAKINEGMQLCVDASCKLVKIMRSCLKESATISEE
        DGSLMITCMPSR ELTQLTITG+WSTAKINEGMQLCVDA CKLVKIMRSCLKESATISEE
Subjt:  DGSLMITCMPSRYELTQLTITGQWSTAKINEGMQLCVDASCKLVKIMRSCLKESATISEE

XP_023534485.1 exosome complex component RRP41-like isoform X2 [Cucurbita pepo subsp. pepo]4.4e-12792.25Show/hide
Query:  MAKKATPATTTYSPSPTTHKTRPPIFRSDDVDWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
        MAKKATPATTTYSPSPTTHKTRPPIFRSDDVDWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDI RLNCSVSY+T
Subjt:  MAKKATPATTTYSPSPTTHKTRPPIFRSDDVDWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT

Query:  FSTSIRGQVDQKTRSSLHLLHKALEGAIILEMFPKTTVDVFALVLESGGSELPVMISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENYEDG
        FST +RGQ  +    S  +LHKALEGAIILEMFPKTTVDVFALVLESGG +LPV+ISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENYEDG
Subjt:  FSTSIRGQVDQKTRSSLHLLHKALEGAIILEMFPKTTVDVFALVLESGGSELPVMISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENYEDG

Query:  SLMITCMPSRYELTQLTITGQWSTAKINEGMQLCVDASCKLVKIMRSCLKESATISEE
        SLMITCMPSR ELTQLTITG+WSTAKINEGMQLCVDA CKLVKIMRSCLKESATISEE
Subjt:  SLMITCMPSRYELTQLTITGQWSTAKINEGMQLCVDASCKLVKIMRSCLKESATISEE

TrEMBL top hitse value%identityAlignment
A0A0A0KEK6 Uncharacterized protein1.0e-12187.26Show/hide
Query:  MAKKATPATTTYSPSPTTHKTRPPIFRSDDVDWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
        MAKKATP TTTYSPSPT HKTRP +FR+DDV+WVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
Subjt:  MAKKATPATTTYSPSPTTHKTRPPIFRSDDVDWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT

Query:  FSTSIRGQVDQKTRSSLHLLHKALEGAIILEMFPKTTVDVFALVLESGGSELPVMISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENYEDG
        FST +RGQ   + +    +LHK+LEGAIILE FPKTTVDVFALVLESGGS+LPV+ISCASLALADAGIMLYDLVASVSVSCFGKNLLID +LEEENY+DG
Subjt:  FSTSIRGQVDQKTRSSLHLLHKALEGAIILEMFPKTTVDVFALVLESGGSELPVMISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENYEDG

Query:  SLMITCMPSRYELTQLTITGQWSTAKINEGMQLCVDASCKLVKIMRSCLKESA-TISEE
        SLMITCMPSRYE+TQLTITG+W+T+KINEGMQLC+DASCKLV+IMRSCLKESA TISEE
Subjt:  SLMITCMPSRYELTQLTITGQWSTAKINEGMQLCVDASCKLVKIMRSCLKESA-TISEE

A0A1S3CKF3 exosome complex component RRP41-like2.1e-12288.08Show/hide
Query:  MAKKATP-ATTTYSPSPTTHKTRPPIFRSDDVDWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYT
        MAKKATP  TTTYSPSPT HKTRPP+FR+DDV+WVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYT
Subjt:  MAKKATP-ATTTYSPSPTTHKTRPPIFRSDDVDWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYT

Query:  TFSTSIRGQVDQKTRSSLHLLHKALEGAIILEMFPKTTVDVFALVLESGGSELPVMISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENYED
        TFST +RGQ  +    S  +LHK+LEGAIILE FPKTTVDVFALVLESGGS+LPV+ISCASLALADAGIMLYDLVASVSVSCFGKNLLIDP+LEEENY+D
Subjt:  TFSTSIRGQVDQKTRSSLHLLHKALEGAIILEMFPKTTVDVFALVLESGGSELPVMISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENYED

Query:  GSLMITCMPSRYELTQLTITGQWSTAKINEGMQLCVDASCKLVKIMRSCLKES-ATISEE
        GSLMITCMPSRYE+TQLTITG+W+T+KINEGMQLC+DASCKLV+IMRSCLKES ATISEE
Subjt:  GSLMITCMPSRYELTQLTITGQWSTAKINEGMQLCVDASCKLVKIMRSCLKES-ATISEE

A0A6J1CHT0 exosome complex component RRP41-like1.4e-12689.92Show/hide
Query:  MAKKATPATTTYSPSPTTHKTRPPIFRSDDVDWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
        MAKKATPATTTYSPSPT HKTRPPIFRSD+ DWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
Subjt:  MAKKATPATTTYSPSPTTHKTRPPIFRSDDVDWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT

Query:  FSTSIRGQVDQKTRSSLHLLHKALEGAIILEMFPKTTVDVFALVLESGGSELPVMISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENYEDG
        F+T +RGQ  +    S  +LHKALEGAIILE FPKTTVD+FALVLESGGS+LPV+ISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENY+DG
Subjt:  FSTSIRGQVDQKTRSSLHLLHKALEGAIILEMFPKTTVDVFALVLESGGSELPVMISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENYEDG

Query:  SLMITCMPSRYELTQLTITGQWSTAKINEGMQLCVDASCKLVKIMRSCLKESATISEE
        SLMITCMPSRYE+TQLTITG+WSTAKINEGMQLC+DASCKLVKIMRSCLKESATIS++
Subjt:  SLMITCMPSRYELTQLTITGQWSTAKINEGMQLCVDASCKLVKIMRSCLKESATISEE

A0A6J1FYV1 exosome complex component RRP41-like2.6e-12590.35Show/hide
Query:  MAKKATPATTTYSPSPTTHKTRPPIFRSDDVDWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
        MAKKATPATTTYSPSPTTHKTRPPIFRSDDVDWVRPDGR FHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
Subjt:  MAKKATPATTTYSPSPTTHKTRPPIFRSDDVDWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT

Query:  FSTSIRGQVDQKTRSSLHLLHKALEGAIILEMFPKTTVDVFALVLESGGSELPVMISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENYEDG
        FST +RGQ  +    S  +LHKALEGAII E FPKTTVDVFALVLESGGS+LPV+ISCASLALADAGIMLYDLVASVSVSCFGKNLLIDP LEEENY+DG
Subjt:  FSTSIRGQVDQKTRSSLHLLHKALEGAIILEMFPKTTVDVFALVLESGGSELPVMISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENYEDG

Query:  SLMITCMPSRYELTQLTITGQWSTAKINEGMQLCVDASCKLVKIMRSCLKES-ATISEE
        SLMITCMPSRYE+TQLTITG+WSTAKINEGMQLC+DASCKLV IMRSCLKES AT+SEE
Subjt:  SLMITCMPSRYELTQLTITGQWSTAKINEGMQLCVDASCKLVKIMRSCLKES-ATISEE

A0A6J1JDA9 exosome complex component RRP41-like2.6e-12590.35Show/hide
Query:  MAKKATPATTTYSPSPTTHKTRPPIFRSDDVDWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
        MAKKATPAT+TYSPSPTTHKTRPPIFRSDDVDWVRPDGR FHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
Subjt:  MAKKATPATTTYSPSPTTHKTRPPIFRSDDVDWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT

Query:  FSTSIRGQVDQKTRSSLHLLHKALEGAIILEMFPKTTVDVFALVLESGGSELPVMISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENYEDG
        FST +RGQ  +    S  +LHKALEGAIILE FPKTTVDVFALVLESGGS+LPV+ISCASLALADAGIMLYDLVASVSVSCFGKNLLIDP LEEENY+DG
Subjt:  FSTSIRGQVDQKTRSSLHLLHKALEGAIILEMFPKTTVDVFALVLESGGSELPVMISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENYEDG

Query:  SLMITCMPSRYELTQLTITGQWSTAKINEGMQLCVDASCKLVKIMRSCLKES-ATISEE
        SLMITCMPSRYE+TQLTITG+WSTAKINEGMQLC+DASCKLV IMRSCLKES AT+SEE
Subjt:  SLMITCMPSRYELTQLTITGQWSTAKINEGMQLCVDASCKLVKIMRSCLKES-ATISEE

SwissProt top hitse value%identityAlignment
A2RVK7 Exosome complex component RRP41-like2.6e-9871.04Show/hide
Query:  MAKKATPATTTYSPSPTTHKTRPPIFRSDDVDWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
        MA K   AT TYSP     ++R PIF+  D+DW RPDGRGFHQCRPA  +TGAV++ASGSAYAEFGNTKVIVSVFGPRESKKAM+YSD+GRLNC+VSYT 
Subjt:  MAKKATPATTTYSPSPTTHKTRPPIFRSDDVDWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT

Query:  FSTSIRGQ-VDQKTRSSLHLLHKALEGAIILEMFPKTTVDVFALVLESGGSELPVMISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENYED
        F++   GQ  D K  SS  +LHKALEG I++E FPKTTVDVFALVLESGGS+L V+ISCASLALADAGIM+YDL+ +VSVSC GK+L+IDP+ EEE  ED
Subjt:  FSTSIRGQ-VDQKTRSSLHLLHKALEGAIILEMFPKTTVDVFALVLESGGSELPVMISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENYED

Query:  GSLMITCMPSRYELTQLTITGQWSTAKINEGMQLCVDASCKLVKIMRSCLKESATISEE
        GS M+TCMPSRYE+TQLTITG+W+T  INE MQLC+DAS KL +IMR CLK+SA+ S+E
Subjt:  GSLMITCMPSRYELTQLTITGQWSTAKINEGMQLCVDASCKLVKIMRSCLKESATISEE

O59223 Exosome complex component Rrp412.7e-2633.05Show/hide
Query:  RPPIFRSDDVDWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSDIGRLNCSVSYTTFSTSIRGQ--VDQKTRSSLH
        +P   +  D +  R DGR  ++ RP   + G +  A+GSAY E+G  K+I +V+GPRE   K +   D   L    +   FS   R +   D+++     
Subjt:  RPPIFRSDDVDWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSDIGRLNCSVSYTTFSTSIRGQ--VDQKTRSSLH

Query:  LLHKALEGAIILEMFPKTTVDVFALVLESGGSELPVMISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENYEDGSLMITCMPSRYELTQLTI
        ++  ALE A+ILEMFP+T++DVF  VL++        I+ ASLALADAGI + DLVA+ +       +++D   EE+NY +  + +  MP + ++T L +
Subjt:  LLHKALEGAIILEMFPKTTVDVFALVLESGGSELPVMISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENYEDGSLMITCMPSRYELTQLTI

Query:  TGQWSTAKINEGMQLCVDASCKLVKIMRSCLKE
         G  +  +  E ++L +  +  + +  R  LKE
Subjt:  TGQWSTAKINEGMQLCVDASCKLVKIMRSCLKE

Q6P0I8 Exosome complex component MTR33.5e-2635.14Show/hide
Query:  RGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRES-KKAMMYSDIGRLNCSVSYTTFSTSIRGQVDQ--KTRSSLHLLHKALEGAIILEMFPK
        RG    RP F R G V+ A GSAY E GNTK+I SV+GP+E+ ++       GRL C      FS   RG   Q  + R     L ++L   + L  +P+
Subjt:  RGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRES-KKAMMYSDIGRLNCSVSYTTFSTSIRGQVDQ--KTRSSLHLLHKALEGAIILEMFPK

Query:  TTVDVFALVLESGGSELPVMISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEE------ENYED--GSLMITCMPSRYELTQLTITGQWSTAKI
        + +DV  +VLE+ GS L   ++CAS+ALADAGI +YD+V   ++   G   L+DP   E      E Y D  G + +  +P+  +++ L   G+     +
Subjt:  TTVDVFALVLESGGSELPVMISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEE------ENYED--GSLMITCMPSRYELTQLTITGQWSTAKI

Query:  NEGMQLCVDASCKLVKIMRSCL
         E M+ C+D   KL  +++  L
Subjt:  NEGMQLCVDASCKLVKIMRSCL

Q8U0L9 Exosome complex component Rrp411.6e-2633.48Show/hide
Query:  RPPIFRSDDVDWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSDIGRLNCSVSYTTFSTSIRGQ--VDQKTRSSLH
        +P   +  D +  R DGR  ++ RP   + G +  A+GSAY E+G  K+I +V+GPRE   K +   D   L    +   FS   R +   D+++     
Subjt:  RPPIFRSDDVDWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSDIGRLNCSVSYTTFSTSIRGQ--VDQKTRSSLH

Query:  LLHKALEGAIILEMFPKTTVDVFALVLESGGSELPVMISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENYEDGSLMITCMPSRYELTQLTI
        ++  ALE A+ILEMFP+T +DVF  VL++        I+ ASLALADAGI + DLVA+ S       +++D   EE+NY +  + +  MP + ++T L +
Subjt:  LLHKALEGAIILEMFPKTTVDVFALVLESGGSELPVMISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENYEDGSLMITCMPSRYELTQLTI

Query:  TGQWSTAKINEGMQLCVDASCKLVKIMRSCLKE
         G  +  +  E ++L +  +  + +  R  LKE
Subjt:  TGQWSTAKINEGMQLCVDASCKLVKIMRSCLKE

Q9V119 Exosome complex component Rrp411.0e-2533.05Show/hide
Query:  RPPIFRSDDVDWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSDIGRLNCSVSYTTFSTSIRGQ--VDQKTRSSLH
        +P   +  D +  R DGR  ++ RP     G +  A+GSAY E+G  K+I +V+GPRE   K +   D   L    +   FS   R +   D+++     
Subjt:  RPPIFRSDDVDWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSDIGRLNCSVSYTTFSTSIRGQ--VDQKTRSSLH

Query:  LLHKALEGAIILEMFPKTTVDVFALVLESGGSELPVMISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENYEDGSLMITCMPSRYELTQLTI
        ++  ALE A+ILEMFP+T +DVF  VL++        I+ ASLALADAGI + DLVA+ +       +++D   EE+NY +  + +  MP + ++T L +
Subjt:  LLHKALEGAIILEMFPKTTVDVFALVLESGGSELPVMISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENYEDGSLMITCMPSRYELTQLTI

Query:  TGQWSTAKINEGMQLCVDASCKLVKIMRSCLKE
         G  +  +  E ++L +  +  + +  R  LKE
Subjt:  TGQWSTAKINEGMQLCVDASCKLVKIMRSCLKE

Arabidopsis top hitse value%identityAlignment
AT3G46210.1 Ribosomal protein S5 domain 2-like superfamily protein6.2e-1028.83Show/hide
Query:  RPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTSIRGQVDQKTRSSLHLLHKALEGAIILEMFP
        R DGR  +Q RP       ++   GSA    G+TKV+ +V+GP+   K    ++         +        GQ+ +  +    +L + ++   +L + P
Subjt:  RPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTSIRGQVDQKTRSSLHLLHKALEGAIILEMFP

Query:  KTTVDVFALVLESGGSELPVMISCASLALADAGIMLYDLVASVSVSCFGKN--LLIDPMLEEE
         TT  V   V+   GS LP  I+ A  AL DAGI +  L  ++   C  +N  L++DP   EE
Subjt:  KTTVDVFALVLESGGSELPVMISCASLALADAGIMLYDLVASVSVSCFGKN--LLIDPMLEEE

AT3G46210.2 Ribosomal protein S5 domain 2-like superfamily protein6.2e-1028.83Show/hide
Query:  RPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTSIRGQVDQKTRSSLHLLHKALEGAIILEMFP
        R DGR  +Q RP       ++   GSA    G+TKV+ +V+GP+   K    ++         +        GQ+ +  +    +L + ++   +L + P
Subjt:  RPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTSIRGQVDQKTRSSLHLLHKALEGAIILEMFP

Query:  KTTVDVFALVLESGGSELPVMISCASLALADAGIMLYDLVASVSVSCFGKN--LLIDPMLEEE
         TT  V   V+   GS LP  I+ A  AL DAGI +  L  ++   C  +N  L++DP   EE
Subjt:  KTTVDVFALVLESGGSELPVMISCASLALADAGIMLYDLVASVSVSCFGKN--LLIDPMLEEE

AT3G61620.1 3'-5'-exoribonuclease family protein1.7e-2029.15Show/hide
Query:  VRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRE--SKKAMMYSDIGRLNCSVSYTTFSTS--IRGQVDQKTRSSLHLLHKALEGAII
        +R DGR F++ R      G V+ A GSA  E GNTKVI +V+GPRE  +K     +D   + C  S   FST    R + D+++     ++ + +E  I+
Subjt:  VRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRE--SKKAMMYSDIGRLNCSVSYTTFSTS--IRGQVDQKTRSSLHLLHKALEGAII

Query:  LEMFPKTTVDVFALVLESGGSELPVMISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENYEDGSLMITCMPSRYELTQLTITGQWSTAKINE
         E+ P + +D+F  VL++ G      I+ A+LALADAGI + DL  S S        L+D    E++     + +  +P   +++ L +  +        
Subjt:  LEMFPKTTVDVFALVLESGGSELPVMISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENYEDGSLMITCMPSRYELTQLTITGQWSTAKINE

Query:  GMQLCVDASCKLVKIMRSCLKES
           L  +    + + +R  L+E+
Subjt:  GMQLCVDASCKLVKIMRSCLKES

AT3G61620.2 3'-5'-exoribonuclease family protein1.7e-2029.15Show/hide
Query:  VRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRE--SKKAMMYSDIGRLNCSVSYTTFSTS--IRGQVDQKTRSSLHLLHKALEGAII
        +R DGR F++ R      G V+ A GSA  E GNTKVI +V+GPRE  +K     +D   + C  S   FST    R + D+++     ++ + +E  I+
Subjt:  VRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRE--SKKAMMYSDIGRLNCSVSYTTFSTS--IRGQVDQKTRSSLHLLHKALEGAII

Query:  LEMFPKTTVDVFALVLESGGSELPVMISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENYEDGSLMITCMPSRYELTQLTITGQWSTAKINE
         E+ P + +D+F  VL++ G      I+ A+LALADAGI + DL  S S        L+D    E++     + +  +P   +++ L +  +        
Subjt:  LEMFPKTTVDVFALVLESGGSELPVMISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENYEDGSLMITCMPSRYELTQLTITGQWSTAKINE

Query:  GMQLCVDASCKLVKIMRSCLKES
           L  +    + + +R  L+E+
Subjt:  GMQLCVDASCKLVKIMRSCLKES

AT4G27490.1 3'-5'-exoribonuclease family protein1.9e-9971.04Show/hide
Query:  MAKKATPATTTYSPSPTTHKTRPPIFRSDDVDWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
        MA K   AT TYSP     ++R PIF+  D+DW RPDGRGFHQCRPA  +TGAV++ASGSAYAEFGNTKVIVSVFGPRESKKAM+YSD+GRLNC+VSYT 
Subjt:  MAKKATPATTTYSPSPTTHKTRPPIFRSDDVDWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT

Query:  FSTSIRGQ-VDQKTRSSLHLLHKALEGAIILEMFPKTTVDVFALVLESGGSELPVMISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENYED
        F++   GQ  D K  SS  +LHKALEG I++E FPKTTVDVFALVLESGGS+L V+ISCASLALADAGIM+YDL+ +VSVSC GK+L+IDP+ EEE  ED
Subjt:  FSTSIRGQ-VDQKTRSSLHLLHKALEGAIILEMFPKTTVDVFALVLESGGSELPVMISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENYED

Query:  GSLMITCMPSRYELTQLTITGQWSTAKINEGMQLCVDASCKLVKIMRSCLKESATISEE
        GS M+TCMPSRYE+TQLTITG+W+T  INE MQLC+DAS KL +IMR CLK+SA+ S+E
Subjt:  GSLMITCMPSRYELTQLTITGQWSTAKINEGMQLCVDASCKLVKIMRSCLKESATISEE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAAAAAAAGCGACACCTGCTACCACTACGTATTCTCCGTCTCCTACTACCCACAAAACCAGGCCACCCATCTTCAGAAGCGACGACGTCGATTGGGTTCGCCCAGA
TGGCCGAGGCTTCCACCAGTGCCGTCCTGCTTTTTTCAGGACTGGTGCTGTAAATGCTGCTTCAGGTTCAGCTTATGCAGAGTTTGGTAATACCAAGGTCATTGTTTCTG
TTTTTGGCCCTAGAGAAAGTAAGAAAGCAATGATGTACAGTGATATTGGCCGGCTGAATTGTAGTGTCAGTTATACAACATTTTCGACTTCAATTCGGGGACAGGTGGAT
CAGAAAACAAGGAGTTCTCTTCATTTGCTACATAAAGCTTTGGAGGGGGCAATAATACTGGAGATGTTCCCCAAGACAACTGTTGATGTATTTGCCTTGGTGTTGGAATC
TGGAGGCAGTGAGCTTCCTGTTATGATATCATGTGCTAGTCTTGCACTTGCTGATGCAGGGATTATGCTTTATGATCTTGTTGCCTCAGTTTCTGTGAGCTGTTTTGGGA
AGAATCTTCTTATTGATCCTATGTTGGAGGAGGAAAACTACGAAGATGGAAGTTTGATGATAACTTGTATGCCATCTCGTTACGAACTCACTCAGCTCACTATCACAGGC
CAGTGGTCAACTGCTAAAATTAATGAGGGTATGCAACTTTGCGTTGATGCGTCGTGTAAGCTTGTGAAGATCATGCGGTCATGTTTGAAGGAATCTGCCACCATTTCAGA
GGAATAA
mRNA sequenceShow/hide mRNA sequence
ATGGCAAAAAAAGCGACACCTGCTACCACTACGTATTCTCCGTCTCCTACTACCCACAAAACCAGGCCACCCATCTTCAGAAGCGACGACGTCGATTGGGTTCGCCCAGA
TGGCCGAGGCTTCCACCAGTGCCGTCCTGCTTTTTTCAGGACTGGTGCTGTAAATGCTGCTTCAGGTTCAGCTTATGCAGAGTTTGGTAATACCAAGGTCATTGTTTCTG
TTTTTGGCCCTAGAGAAAGTAAGAAAGCAATGATGTACAGTGATATTGGCCGGCTGAATTGTAGTGTCAGTTATACAACATTTTCGACTTCAATTCGGGGACAGGTGGAT
CAGAAAACAAGGAGTTCTCTTCATTTGCTACATAAAGCTTTGGAGGGGGCAATAATACTGGAGATGTTCCCCAAGACAACTGTTGATGTATTTGCCTTGGTGTTGGAATC
TGGAGGCAGTGAGCTTCCTGTTATGATATCATGTGCTAGTCTTGCACTTGCTGATGCAGGGATTATGCTTTATGATCTTGTTGCCTCAGTTTCTGTGAGCTGTTTTGGGA
AGAATCTTCTTATTGATCCTATGTTGGAGGAGGAAAACTACGAAGATGGAAGTTTGATGATAACTTGTATGCCATCTCGTTACGAACTCACTCAGCTCACTATCACAGGC
CAGTGGTCAACTGCTAAAATTAATGAGGGTATGCAACTTTGCGTTGATGCGTCGTGTAAGCTTGTGAAGATCATGCGGTCATGTTTGAAGGAATCTGCCACCATTTCAGA
GGAATAAAAGTAAGCCATTTTTTCATTCCAAGGAAAAGAACACAAAAGAATTGGAATGGTGGAAGAAGCGAAGTTGACTTGAAGCTATTTTTGCATTTATTATAATGTTG
GTGAGTCAAGTCAGAGCCTCAGCCTACCTCTTTCTGGTCTTCCTGGTCTATGGTCTGCGCTTCTGCCAACGCCCATTTTCAAAGTCTATTCCCCCACCAAAGTCAATTTT
CATTATATACATGTATGTGTATTATTCTTTTTTTAATGGTTAGTTATGATCCTTTGAGATAATA
Protein sequenceShow/hide protein sequence
MAKKATPATTTYSPSPTTHKTRPPIFRSDDVDWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTSIRGQVD
QKTRSSLHLLHKALEGAIILEMFPKTTVDVFALVLESGGSELPVMISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENYEDGSLMITCMPSRYELTQLTITG
QWSTAKINEGMQLCVDASCKLVKIMRSCLKESATISEE