; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg08596 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg08596
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionsplicing factor U2af small subunit B-like
Genome locationCarg_Chr09:84063..84890
RNA-Seq ExpressionCarg08596
SyntenyCarg08596
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0005681 - spliceosomal complex (cellular component)
GO:0089701 - U2AF (cellular component)
GO:0030628 - pre-mRNA 3'-splice site binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR000571 - Zinc finger, CCCH-type
IPR003954 - RNA recognition motif domain, eukaryote
IPR009145 - U2 auxiliary factor small subunit
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022142994.1 splicing factor U2af small subunit B-like [Momordica charantia]1.9e-14796.72Show/hide
Query:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNV
        MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIE LNV
Subjt:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNV

Query:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRHRGYRRSRSRSRS
        CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGR+RGYRRSRSRSRS
Subjt:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRHRGYRRSRSRSRS

Query:  LSPRNRKELDRRERDYRDRESRGNGRSKERHDRYDRDGGRRRHGSPRRSRSPVREGSVERRARIEQWNREREEK
        LSPRNRK+ DRRERD+RDR+ RGNGRSKER+DRYDRDGGRRRHGSPRRSRSPVREGS ERRARIEQWNREREEK
Subjt:  LSPRNRKELDRRERDYRDRESRGNGRSKERHDRYDRDGGRRRHGSPRRSRSPVREGSVERRARIEQWNREREEK

XP_022936161.1 splicing factor U2af small subunit B-like [Cucurbita moschata]4.3e-15299.28Show/hide
Query:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNV
        MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNV
Subjt:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNV

Query:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRHRGYR--RSRSRS
        CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRHRGYR  RSRSRS
Subjt:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRHRGYR--RSRSRS

Query:  RSLSPRNRKELDRRERDYRDRESRGNGRSKERHDRYDRDGGRRRHGSPRRSRSPVREGSVERRARIEQWNREREEKQ
        RSLSPRNRKELDRRERDYRDRESRGNGRSKERHDRYDRDGGRRRHGSPRRSRSPVREGSVERRARIEQWNREREEKQ
Subjt:  RSLSPRNRKELDRRERDYRDRESRGNGRSKERHDRYDRDGGRRRHGSPRRSRSPVREGSVERRARIEQWNREREEKQ

XP_022941119.1 splicing factor U2af small subunit B-like [Cucurbita moschata]3.5e-14696.38Show/hide
Query:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNV
        MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIE LN+
Subjt:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNV

Query:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFG-RHRGYRRSRSRSR
        CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFG R RGYRRSRSRSR
Subjt:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFG-RHRGYRRSRSRSR

Query:  SLSPRNRKELDRRERDYRDRESRGNGRSKERHDRYDRDGGRRRHGSPRRSRSPVREGSVERRARIEQWNREREEKQ
        SLSPRNRK+ DRRERDYRDR+ RGNGRSKER DRYDRDGGRRRHGSPRRSRSPVREGS ERRARIEQWNREREEKQ
Subjt:  SLSPRNRKELDRRERDYRDRESRGNGRSKERHDRYDRDGGRRRHGSPRRSRSPVREGSVERRARIEQWNREREEKQ

XP_023521110.1 splicing factor U2af small subunit B-like [Cucurbita pepo subsp. pepo]1.3e-153100Show/hide
Query:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNV
        MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNV
Subjt:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNV

Query:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRHRGYRRSRSRSRS
        CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRHRGYRRSRSRSRS
Subjt:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRHRGYRRSRSRSRS

Query:  LSPRNRKELDRRERDYRDRESRGNGRSKERHDRYDRDGGRRRHGSPRRSRSPVREGSVERRARIEQWNREREEKQ
        LSPRNRKELDRRERDYRDRESRGNGRSKERHDRYDRDGGRRRHGSPRRSRSPVREGSVERRARIEQWNREREEKQ
Subjt:  LSPRNRKELDRRERDYRDRESRGNGRSKERHDRYDRDGGRRRHGSPRRSRSPVREGSVERRARIEQWNREREEKQ

XP_023525325.1 splicing factor U2af small subunit B-like [Cucurbita pepo subsp. pepo]1.0e-14596.01Show/hide
Query:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNV
        MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIE LN+
Subjt:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNV

Query:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFG-RHRGYRRSRSRSR
        CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFG R RGYRRSRSRSR
Subjt:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFG-RHRGYRRSRSRSR

Query:  SLSPRNRKELDRRERDYRDRESRGNGRSKERHDRYDRDGGRRRHGSPRRSRSPVREGSVERRARIEQWNREREEKQ
        SLSPRNRK+ DRRERDYRDR+ RGNGRSKER DR+DRDGGRRRHGSPRRSRSPVREGS ERRARIEQWNREREEKQ
Subjt:  SLSPRNRKELDRRERDYRDRESRGNGRSKERHDRYDRDGGRRRHGSPRRSRSPVREGSVERRARIEQWNREREEKQ

TrEMBL top hitse value%identityAlignment
A0A5A7VFL1 Splicing factor U2af small subunit B-like2.5e-14294.98Show/hide
Query:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNV
        MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIE LNV
Subjt:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNV

Query:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRHRGYRRSRSRSRS
        CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGR+RGYR SRSRSRS
Subjt:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRHRGYRRSRSRSRS

Query:  LSPRNRKELDRRERDYRDRESRGNGRSKERHDRYDRDGGRRRHGSPR--RSRSPV--REGSVERRARIEQWNREREEKQ
        LSPRNRKE DRRERDYR+RE RGNGRSKERH   DRDGGRRRHGSPR  RSRSPV  REGS ERRARIEQWNREREEKQ
Subjt:  LSPRNRKELDRRERDYRDRESRGNGRSKERHDRYDRDGGRRRHGSPR--RSRSPV--REGSVERRARIEQWNREREEKQ

A0A6J1CN17 splicing factor U2af small subunit B-like9.0e-14896.72Show/hide
Query:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNV
        MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIE LNV
Subjt:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNV

Query:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRHRGYRRSRSRSRS
        CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGR+RGYRRSRSRSRS
Subjt:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRHRGYRRSRSRSRS

Query:  LSPRNRKELDRRERDYRDRESRGNGRSKERHDRYDRDGGRRRHGSPRRSRSPVREGSVERRARIEQWNREREEK
        LSPRNRK+ DRRERD+RDR+ RGNGRSKER+DRYDRDGGRRRHGSPRRSRSPVREGS ERRARIEQWNREREEK
Subjt:  LSPRNRKELDRRERDYRDRESRGNGRSKERHDRYDRDGGRRRHGSPRRSRSPVREGSVERRARIEQWNREREEK

A0A6J1F6R3 splicing factor U2af small subunit B-like2.1e-15299.28Show/hide
Query:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNV
        MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNV
Subjt:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNV

Query:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRHRGYR--RSRSRS
        CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRHRGYR  RSRSRS
Subjt:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRHRGYR--RSRSRS

Query:  RSLSPRNRKELDRRERDYRDRESRGNGRSKERHDRYDRDGGRRRHGSPRRSRSPVREGSVERRARIEQWNREREEKQ
        RSLSPRNRKELDRRERDYRDRESRGNGRSKERHDRYDRDGGRRRHGSPRRSRSPVREGSVERRARIEQWNREREEKQ
Subjt:  RSLSPRNRKELDRRERDYRDRESRGNGRSKERHDRYDRDGGRRRHGSPRRSRSPVREGSVERRARIEQWNREREEKQ

A0A6J1FSM7 splicing factor U2af small subunit B-like1.7e-14696.38Show/hide
Query:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNV
        MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIE LN+
Subjt:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNV

Query:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFG-RHRGYRRSRSRSR
        CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFG R RGYRRSRSRSR
Subjt:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFG-RHRGYRRSRSRSR

Query:  SLSPRNRKELDRRERDYRDRESRGNGRSKERHDRYDRDGGRRRHGSPRRSRSPVREGSVERRARIEQWNREREEKQ
        SLSPRNRK+ DRRERDYRDR+ RGNGRSKER DRYDRDGGRRRHGSPRRSRSPVREGS ERRARIEQWNREREEKQ
Subjt:  SLSPRNRKELDRRERDYRDRESRGNGRSKERHDRYDRDGGRRRHGSPRRSRSPVREGSVERRARIEQWNREREEKQ

A0A6J1IV82 splicing factor U2af small subunit B-like1.7e-14696.38Show/hide
Query:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNV
        MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIE LN+
Subjt:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNV

Query:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFG-RHRGYRRSRSRSR
        CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFG R RGYRRSRSRSR
Subjt:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFG-RHRGYRRSRSRSR

Query:  SLSPRNRKELDRRERDYRDRESRGNGRSKERHDRYDRDGGRRRHGSPRRSRSPVREGSVERRARIEQWNREREEKQ
        SLSPRNRK+ DRRERDYRDR+ RGNGRSKER DRYDRDGGRRRHGSPRRSRSPVREGS ERRARIEQWNREREEKQ
Subjt:  SLSPRNRKELDRRERDYRDRESRGNGRSKERHDRYDRDGGRRRHGSPRRSRSPVREGSVERRARIEQWNREREEKQ

SwissProt top hitse value%identityAlignment
A1A4K8 Splicing factor U2AF 35 kDa subunit8.3e-6653.47Show/hide
Query:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEEL-GKFGEIECLN
        MAE+LASIFGTEKD+VNC FYFKIGACRHGDRCSRLHN+PT S T+ L N+Y+ P   +   D     +   ++QEH+++F+E+++ E+  K+GE+E +N
Subjt:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEEL-GKFGEIECLN

Query:  VCDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRHRGYRRSRSRSR
        VCDNL DH++GNVYV+FR E+ A  A+  L  R+++G+PI A+ SPVTDFREA CRQYE   C RGG+CNFMH+K I ++LRR+L+GR R   RSRSRSR
Subjt:  VCDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRHRGYRRSRSRSR

Query:  SLSPRNRKELDRRERDYRDRESRGNGRSKERHDRYDRDGGRRRHG
                E   R RD       G G  +ER  R  RD  R R G
Subjt:  SLSPRNRKELDRRERDYRDRESRGNGRSKERHDRYDRDGGRRRHG

Q6AUG0 Splicing factor U2af small subunit B3.3e-11573.53Show/hide
Query:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNV
        MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPT+SPT++L+NMYQRPDMITPGVDAQGQPIDP K+QEHFEDFYEDIYEEL KFGE+E LNV
Subjt:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNV

Query:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRHRGYRRSRSRSRS
        CDNLADHMIGNVYVQFREE+QA AA  ALQGRFYSGRPII ++SPVTDFREATCRQ+EEN+CNRGGYCNFMHVK IG++LRRKL+G     RRS  RSRS
Subjt:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRHRGYRRSRSRSRS

Query:  LSPRNR-----KELDRRERD--------------------YRDRES-RGNG-----RSKERHDRYDRDGGRRRHGS-PRRSRSPVREGSVERRARIEQWN
         SPR+R     ++  RRERD                    YR  +S RG G         R+DRYD DGGRRRHGS PRR+RSPVRE S ERRA+IEQWN
Subjt:  LSPRNR-----KELDRRERD--------------------YRDRES-RGNG-----RSKERHDRYDRDGGRRRHGS-PRRSRSPVREGSVERRARIEQWN

Query:  REREEK
        REREEK
Subjt:  REREEK

Q9FMY5 Splicing factor U2af small subunit B9.3e-12684.34Show/hide
Query:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNV
        MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVD QGQP+DP KIQ+HFEDFYEDI+EEL KFGE+E LNV
Subjt:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNV

Query:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRH-RGYRR-SRSRS
        CDNLADHMIGNVYV F+EED AAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEEN+CNRGGYCNFMHVK I ++LRRKLFGR+ R YRR SRSRS
Subjt:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRH-RGYRR-SRSRS

Query:  RSLSPRNRKELDR-RER-DYRDRESRGNG-RSKERHDRYDRD-GGRRRHGSPRRSRSP--VREGSVERRARIEQWNREREE
        RS+SPR ++E  R RER D RDR+  GNG RS +R +R+DRD GGRRRHGSP+RSRSP  VREGS ERRARIEQWNRER+E
Subjt:  RSLSPRNRKELDR-RER-DYRDRESRGNG-RSKERHDRYDRD-GGRRRHGSPRRSRSP--VREGSVERRARIEQWNREREE

Q9S709 Splicing factor U2af small subunit A1.1e-12380.48Show/hide
Query:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNV
        MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQP+DPRKIQEHFEDF+ED++EELGKFGEIE LN+
Subjt:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNV

Query:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRH-RGYR---RSRS
        CDNLADHMIGNVYVQF+EEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVK++ ++LRRKLFGR+ R YR   RSRS
Subjt:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRH-RGYR---RSRS

Query:  RSRSLSPRNRKELDRRERDY-------RDRE--SRGNG-RSKERHDRYDRDGGR-RRHGSPRRSRSP--VREGSVERRARIEQWNREREEKQ
        RSRS+SPRN+++ DRR+  +       RDRE    G+G RS ER +R +RDG R RR  SP+R  SP   REGS ERRARIEQWNREREEK+
Subjt:  RSRSLSPRNRKELDRRERDY-------RDRE--SRGNG-RSKERHDRYDRDGGR-RRHGSPRRSRSP--VREGSVERRARIEQWNREREEKQ

Q9ZQW8 Splicing factor U2af small subunit A1.2e-10972.85Show/hide
Query:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNV
        MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHN+P++SPTLLLSNMY RPDMITPG+DAQG PIDP KIQ  FEDFYEDI+EEL K+GEIE L+V
Subjt:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNV

Query:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRHRGYRRSRSRSRS
        CDN ADHMIGNVYVQFREEDQAA ALQAL GR+YSGRPII +FSPV+DFREATCRQYEEN+CNRGGYCNFMHVK IG+DLR++LFG     RRS S  RS
Subjt:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRHRGYRRSRSRSRS

Query:  LSP---RNRKELDR----RERDY--------RDRESRGNGRSKERH-DRYDRDGGRRRHGSPRRSRSPVREGSVERRARIEQWNREREEKQ
         SP     R++ DR    R RD+         D    G+ RS ERH   YD DG RRRH S  R+RSPVR+GS ERRA+IEQWNRERE  Q
Subjt:  LSP---RNRKELDR----RERDY--------RDRESRGNGRSKERH-DRYDRDGGRRRHGSPRRSRSPVREGSVERRARIEQWNREREEKQ

Arabidopsis top hitse value%identityAlignment
AT1G10320.1 Zinc finger C-x8-C-x5-C-x3-H type family protein1.3e-2933.22Show/hide
Query:  FGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNVCDNLADHM
        FGTE+D+ +CPF+ K GACR G RCSR+H  P  S TLL+ NMY  P  IT   D +G      + +  +E+FYED++ E  K+GE+    VC N + H+
Subjt:  FGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNVCDNLADHM

Query:  IGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEEN---NCNRGGYCNFMH-VKMIGKDLR----------------RKLFG--
         GNVYV +R  + A  A Q++ GR+++G+ +  +F  ++ ++ A C +Y ++    C+RG  CNF+H  +  G D                    LFG  
Subjt:  IGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEEN---NCNRGGYCNFMH-VKMIGKDLR----------------RKLFG--

Query:  --RHRGYRRSRSRSRS---LSPRNRKELDRRER-------------DYRDRESRGNGRSKERHDRYDRDGGRRRHGSPRRSRSPVREGSVER
          +H  +  S S + S   LS  + ++  RR R              YR R+  G+ +   R D+  R       G      SP R+GS+ER
Subjt:  --RHRGYRRSRSRSRS---LSPRNRKELDRRER-------------DYRDRESRGNGRSKERHDRYDRDGGRRRHGSPRRSRSPVREGSVER

AT1G27650.1 U2 snRNP auxiliary factor small subunit, putative8.1e-12580.48Show/hide
Query:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNV
        MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQP+DPRKIQEHFEDF+ED++EELGKFGEIE LN+
Subjt:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNV

Query:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRH-RGYR---RSRS
        CDNLADHMIGNVYVQF+EEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVK++ ++LRRKLFGR+ R YR   RSRS
Subjt:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRH-RGYR---RSRS

Query:  RSRSLSPRNRKELDRRERDY-------RDRE--SRGNG-RSKERHDRYDRDGGR-RRHGSPRRSRSP--VREGSVERRARIEQWNREREEKQ
        RSRS+SPRN+++ DRR+  +       RDRE    G+G RS ER +R +RDG R RR  SP+R  SP   REGS ERRARIEQWNREREEK+
Subjt:  RSRSLSPRNRKELDRRERDY-------RDRE--SRGNG-RSKERHDRYDRDGGR-RRHGSPRRSRSP--VREGSVERRARIEQWNREREEKQ

AT1G27650.2 U2 snRNP auxiliary factor small subunit, putative4.0e-9276.45Show/hide
Query:  MYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNVCDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFR
        MYQRPDMITPGVDAQGQP+DPRKIQEHFEDF+ED++EELGKFGEIE LN+CDNLADHMIGNVYVQF+EEDQAAAALQALQGRFYSGRPIIADFSPVTDFR
Subjt:  MYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNVCDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFR

Query:  EATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRH-RGYR---RSRSRSRSLSPRNRKELDRRERDY-------RDRE--SRGNG-RSKERHDRYDR
        EATCRQYEENNCNRGGYCNFMHVK++ ++LRRKLFGR+ R YR   RSRSRSRS+SPRN+++ DRR+  +       RDRE    G+G RS ER +R +R
Subjt:  EATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRH-RGYR---RSRSRSRSLSPRNRKELDRRERDY-------RDRE--SRGNG-RSKERHDRYDR

Query:  DGGR-RRHGSPRRSRSP--VREGSVERRARIEQWNREREEKQ
        DG R RR  SP+R  SP   REGS ERRARIEQWNREREEK+
Subjt:  DGGR-RRHGSPRRSRSP--VREGSVERRARIEQWNREREEKQ

AT5G42820.1 Zinc finger C-x8-C-x5-C-x3-H type family protein6.6e-12784.34Show/hide
Query:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNV
        MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVD QGQP+DP KIQ+HFEDFYEDI+EEL KFGE+E LNV
Subjt:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNV

Query:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRH-RGYRR-SRSRS
        CDNLADHMIGNVYV F+EED AAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEEN+CNRGGYCNFMHVK I ++LRRKLFGR+ R YRR SRSRS
Subjt:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRH-RGYRR-SRSRS

Query:  RSLSPRNRKELDR-RER-DYRDRESRGNG-RSKERHDRYDRD-GGRRRHGSPRRSRSP--VREGSVERRARIEQWNREREE
        RS+SPR ++E  R RER D RDR+  GNG RS +R +R+DRD GGRRRHGSP+RSRSP  VREGS ERRARIEQWNRER+E
Subjt:  RSLSPRNRKELDR-RER-DYRDRESRGNG-RSKERHDRYDRD-GGRRRHGSPRRSRSP--VREGSVERRARIEQWNREREE

AT5G42820.2 Zinc finger C-x8-C-x5-C-x3-H type family protein6.6e-12784.34Show/hide
Query:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNV
        MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVD QGQP+DP KIQ+HFEDFYEDI+EEL KFGE+E LNV
Subjt:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNV

Query:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRH-RGYRR-SRSRS
        CDNLADHMIGNVYV F+EED AAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEEN+CNRGGYCNFMHVK I ++LRRKLFGR+ R YRR SRSRS
Subjt:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRH-RGYRR-SRSRS

Query:  RSLSPRNRKELDR-RER-DYRDRESRGNG-RSKERHDRYDRD-GGRRRHGSPRRSRSP--VREGSVERRARIEQWNREREE
        RS+SPR ++E  R RER D RDR+  GNG RS +R +R+DRD GGRRRHGSP+RSRSP  VREGS ERRARIEQWNRER+E
Subjt:  RSLSPRNRKELDR-RER-DYRDRESRGNG-RSKERHDRYDRD-GGRRRHGSPRRSRSP--VREGSVERRARIEQWNREREE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGAACACTTGGCCTCAATATTTGGCACGGAGAAGGACCGTGTCAACTGCCCTTTCTATTTCAAGATCGGCGCCTGCCGTCATGGAGATCGCTGCTCTCGCCTCCA
CAACCGCCCTACTATTTCCCCGACACTTCTCTTGTCGAACATGTACCAACGCCCCGACATGATCACCCCCGGCGTCGATGCTCAGGGCCAGCCTATAGATCCCCGAAAGA
TTCAGGAGCACTTTGAGGATTTCTATGAAGACATTTACGAGGAACTTGGTAAGTTCGGTGAGATCGAGTGCCTTAATGTCTGTGATAATCTCGCCGACCACATGATTGGC
AATGTCTACGTTCAGTTTAGGGAGGAGGACCAGGCAGCTGCCGCATTACAAGCGTTGCAAGGGCGGTTCTACTCTGGTCGACCCATTATCGCAGATTTTTCTCCGGTGAC
TGATTTCCGCGAAGCCACGTGCCGCCAATACGAGGAGAATAATTGCAATCGAGGGGGATATTGCAATTTTATGCATGTCAAGATGATCGGGAAGGATCTGAGGAGGAAGC
TGTTCGGTAGGCATCGGGGATATAGGCGGAGCCGGAGCAGGAGTAGAAGTTTGAGTCCGCGGAACCGGAAGGAGTTGGATAGGCGCGAGAGGGATTACAGAGATCGTGAG
TCTCGCGGAAACGGACGGAGCAAGGAGCGTCATGATAGGTATGATAGGGATGGGGGAAGGAGAAGGCATGGTAGCCCCAGACGAAGCAGAAGCCCTGTGAGAGAAGGAAG
CGTAGAGCGCCGTGCCCGTATTGAACAGTGGAACCGAGAAAGGGAGGAGAAGCAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTGAACACTTGGCCTCAATATTTGGCACGGAGAAGGACCGTGTCAACTGCCCTTTCTATTTCAAGATCGGCGCCTGCCGTCATGGAGATCGCTGCTCTCGCCTCCA
CAACCGCCCTACTATTTCCCCGACACTTCTCTTGTCGAACATGTACCAACGCCCCGACATGATCACCCCCGGCGTCGATGCTCAGGGCCAGCCTATAGATCCCCGAAAGA
TTCAGGAGCACTTTGAGGATTTCTATGAAGACATTTACGAGGAACTTGGTAAGTTCGGTGAGATCGAGTGCCTTAATGTCTGTGATAATCTCGCCGACCACATGATTGGC
AATGTCTACGTTCAGTTTAGGGAGGAGGACCAGGCAGCTGCCGCATTACAAGCGTTGCAAGGGCGGTTCTACTCTGGTCGACCCATTATCGCAGATTTTTCTCCGGTGAC
TGATTTCCGCGAAGCCACGTGCCGCCAATACGAGGAGAATAATTGCAATCGAGGGGGATATTGCAATTTTATGCATGTCAAGATGATCGGGAAGGATCTGAGGAGGAAGC
TGTTCGGTAGGCATCGGGGATATAGGCGGAGCCGGAGCAGGAGTAGAAGTTTGAGTCCGCGGAACCGGAAGGAGTTGGATAGGCGCGAGAGGGATTACAGAGATCGTGAG
TCTCGCGGAAACGGACGGAGCAAGGAGCGTCATGATAGGTATGATAGGGATGGGGGAAGGAGAAGGCATGGTAGCCCCAGACGAAGCAGAAGCCCTGTGAGAGAAGGAAG
CGTAGAGCGCCGTGCCCGTATTGAACAGTGGAACCGAGAAAGGGAGGAGAAGCAGTGA
Protein sequenceShow/hide protein sequence
MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNVCDNLADHMIG
NVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRHRGYRRSRSRSRSLSPRNRKELDRRERDYRDRE
SRGNGRSKERHDRYDRDGGRRRHGSPRRSRSPVREGSVERRARIEQWNREREEKQ