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Carg08599 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg08599
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionSWI/SNF complex subunit SWI3B
Genome locationCarg_Chr09:96584..97293
RNA-Seq ExpressionCarg08599
SyntenyCarg08599
Gene Ontology termsGO:0043229 - intracellular organelle (cellular component)
InterPro domainsIPR032451 - SMARCC, C-terminal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6591190.1 SWI/SNF complex subunit SWI3B, partial [Cucurbita argyrosperma subsp. sororia]6.0e-4798.13Show/hide
Query:  DSGNDVVSCGGSTARSSFSVSSVDANSQIEKEEVAVEKAISHILDVQMKEAVDKLDRLEEIDLQMEKEFKQLDQMKSMLFVDQLNLLFRKGCIPTIEDKN
        D GNDVVSCGGSTARSSFSVSSVDANSQIEKEEVAVEKAISHILDVQMKEAVDKLDRLEE+DLQMEKEFKQLDQMKSMLFVDQLNLLFRKGCIPTIEDKN
Subjt:  DSGNDVVSCGGSTARSSFSVSSVDANSQIEKEEVAVEKAISHILDVQMKEAVDKLDRLEEIDLQMEKEFKQLDQMKSMLFVDQLNLLFRKGCIPTIEDKN

Query:  SKNLSTY
        SKNLSTY
Subjt:  SKNLSTY

KAG7024076.1 SWI/SNF complex subunit SWI3B, partial [Cucurbita argyrosperma subsp. argyrosperma]4.3e-53100Show/hide
Query:  MGLSYLFCSDSGNDVVSCGGSTARSSFSVSSVDANSQIEKEEVAVEKAISHILDVQMKEAVDKLDRLEEIDLQMEKEFKQLDQMKSMLFVDQLNLLFRKG
        MGLSYLFCSDSGNDVVSCGGSTARSSFSVSSVDANSQIEKEEVAVEKAISHILDVQMKEAVDKLDRLEEIDLQMEKEFKQLDQMKSMLFVDQLNLLFRKG
Subjt:  MGLSYLFCSDSGNDVVSCGGSTARSSFSVSSVDANSQIEKEEVAVEKAISHILDVQMKEAVDKLDRLEEIDLQMEKEFKQLDQMKSMLFVDQLNLLFRKG

Query:  CIPTIEDKNSKNLSTY
        CIPTIEDKNSKNLSTY
Subjt:  CIPTIEDKNSKNLSTY

XP_022936036.1 SWI/SNF complex subunit SWI3B [Cucurbita moschata]1.7e-4697.2Show/hide
Query:  DSGNDVVSCGGSTARSSFSVSSVDANSQIEKEEVAVEKAISHILDVQMKEAVDKLDRLEEIDLQMEKEFKQLDQMKSMLFVDQLNLLFRKGCIPTIEDKN
        D GNDVVSCGGSTARSSFSVSSVDANSQIEKEEVAVEKAISHILDVQ+KEAVDKLDRLEE+DLQMEKEFKQLDQMKSMLFVDQLNLLFRKGCIPTIEDKN
Subjt:  DSGNDVVSCGGSTARSSFSVSSVDANSQIEKEEVAVEKAISHILDVQMKEAVDKLDRLEEIDLQMEKEFKQLDQMKSMLFVDQLNLLFRKGCIPTIEDKN

Query:  SKNLSTY
        SKNLSTY
Subjt:  SKNLSTY

XP_022975356.1 SWI/SNF complex subunit SWI3B [Cucurbita maxima]4.3e-4596.26Show/hide
Query:  DSGNDVVSCGGSTARSSFSVSSVDANSQIEKEEVAVEKAISHILDVQMKEAVDKLDRLEEIDLQMEKEFKQLDQMKSMLFVDQLNLLFRKGCIPTIEDKN
        D GNDVVSCGGSTARSSFSVSSVDANSQIEKEEVAVEKAISHILDVQMKEAVDKLDRLEE+DLQMEKEFKQLDQMKSMLFVDQLNLLF KG IPTIEDKN
Subjt:  DSGNDVVSCGGSTARSSFSVSSVDANSQIEKEEVAVEKAISHILDVQMKEAVDKLDRLEEIDLQMEKEFKQLDQMKSMLFVDQLNLLFRKGCIPTIEDKN

Query:  SKNLSTY
        SKNLSTY
Subjt:  SKNLSTY

XP_023515051.1 SWI/SNF complex subunit SWI3B [Cucurbita pepo subsp. pepo]8.6e-4696.26Show/hide
Query:  DSGNDVVSCGGSTARSSFSVSSVDANSQIEKEEVAVEKAISHILDVQMKEAVDKLDRLEEIDLQMEKEFKQLDQMKSMLFVDQLNLLFRKGCIPTIEDKN
        D GN+VVSCGGSTARSSFSVSSVDANSQIEKEEVAVEKAISHILDVQMKEAVDKLDRLEE+DLQMEKEFKQLDQMKSMLFVDQLNLLF KGCIPTIEDKN
Subjt:  DSGNDVVSCGGSTARSSFSVSSVDANSQIEKEEVAVEKAISHILDVQMKEAVDKLDRLEEIDLQMEKEFKQLDQMKSMLFVDQLNLLFRKGCIPTIEDKN

Query:  SKNLSTY
        SKNLSTY
Subjt:  SKNLSTY

TrEMBL top hitse value%identityAlignment
A0A0A0L3F9 Uncharacterized protein7.7e-1656.07Show/hide
Query:  DSGNDVVSCGGSTARSSFSVSSVDANSQIEKEEVAVEKAISHILDVQMKEAVDKLDRLEEIDLQMEKEFKQLDQMKSMLFVDQLNLLFRKGCI-PTIEDK
        + GND  S GGS        S++D           +EKAISHI++VQMKE VDKL+  EE +LQMEK FKQLDQMKSMLFVDQLNLLF K CI  T+E+K
Subjt:  DSGNDVVSCGGSTARSSFSVSSVDANSQIEKEEVAVEKAISHILDVQMKEAVDKLDRLEEIDLQMEKEFKQLDQMKSMLFVDQLNLLFRKGCI-PTIEDK

Query:  NSKNLST
        ++ N+ T
Subjt:  NSKNLST

A0A1S3BW08 SWI/SNF complex subunit SWI3B5.5e-2262.26Show/hide
Query:  DSGNDVVSCGGSTARSSFSVSSVDANSQIEKEEVAVEKAISHILDVQMKEAVDKLDRLEEIDLQMEKEFKQLDQMKSMLFVDQLNLLFRKGCIPTIEDKN
        + GNDV SC GS  R     SS+D           +EKAISHI+DVQMKE VDKL+  EE +LQMEK FKQLDQMKSMLFVDQLNLLF KGC+PT+EDK+
Subjt:  DSGNDVVSCGGSTARSSFSVSSVDANSQIEKEEVAVEKAISHILDVQMKEAVDKLDRLEEIDLQMEKEFKQLDQMKSMLFVDQLNLLFRKGCIPTIEDKN

Query:  SKNLST
        + N+ T
Subjt:  SKNLST

A0A6J1C9A8 SWI/SNF complex subunit SWI3B6.7e-2867.59Show/hide
Query:  DSGNDVVSCGGSTARSSFSVSSVDANSQIEKEEVAVEKAISHILDVQMKEAVDKLDRLEEIDLQMEKEFKQLDQMKSMLFVDQLNLLFRKGCIP--TIED
        + GN+V S GGS+  S+   SSVDANSQI++EEV VE+AISHILDV+MKE VDK+   EE+DLQMEKE  QLDQMKSMLFVDQLNLLF +GCIP  T++D
Subjt:  DSGNDVVSCGGSTARSSFSVSSVDANSQIEKEEVAVEKAISHILDVQMKEAVDKLDRLEEIDLQMEKEFKQLDQMKSMLFVDQLNLLFRKGCIP--TIED

Query:  KNSKNLST
        K+ KN+ T
Subjt:  KNSKNLST

A0A6J1F6D7 SWI/SNF complex subunit SWI3B8.4e-4797.2Show/hide
Query:  DSGNDVVSCGGSTARSSFSVSSVDANSQIEKEEVAVEKAISHILDVQMKEAVDKLDRLEEIDLQMEKEFKQLDQMKSMLFVDQLNLLFRKGCIPTIEDKN
        D GNDVVSCGGSTARSSFSVSSVDANSQIEKEEVAVEKAISHILDVQ+KEAVDKLDRLEE+DLQMEKEFKQLDQMKSMLFVDQLNLLFRKGCIPTIEDKN
Subjt:  DSGNDVVSCGGSTARSSFSVSSVDANSQIEKEEVAVEKAISHILDVQMKEAVDKLDRLEEIDLQMEKEFKQLDQMKSMLFVDQLNLLFRKGCIPTIEDKN

Query:  SKNLSTY
        SKNLSTY
Subjt:  SKNLSTY

A0A6J1IDY0 SWI/SNF complex subunit SWI3B2.1e-4596.26Show/hide
Query:  DSGNDVVSCGGSTARSSFSVSSVDANSQIEKEEVAVEKAISHILDVQMKEAVDKLDRLEEIDLQMEKEFKQLDQMKSMLFVDQLNLLFRKGCIPTIEDKN
        D GNDVVSCGGSTARSSFSVSSVDANSQIEKEEVAVEKAISHILDVQMKEAVDKLDRLEE+DLQMEKEFKQLDQMKSMLFVDQLNLLF KG IPTIEDKN
Subjt:  DSGNDVVSCGGSTARSSFSVSSVDANSQIEKEEVAVEKAISHILDVQMKEAVDKLDRLEEIDLQMEKEFKQLDQMKSMLFVDQLNLLFRKGCIPTIEDKN

Query:  SKNLSTY
        SKNLSTY
Subjt:  SKNLSTY

SwissProt top hitse value%identityAlignment
Q84JG2 SWI/SNF complex subunit SWI3B1.0e-0941.57Show/hide
Query:  GSTARSSFSVSSVDANSQIEKEEVAVEKAISHILDVQMKEAVDKLDRLEEIDLQMEKEFKQLDQMKSMLFVDQLNLLFRKGCIPTIEDK
        G T R+    +  DA S IEKEE  VE AI   ++V+MK+  D++   E++DL+ME+  KQL++++++LFVDQLN+ F        ED+
Subjt:  GSTARSSFSVSSVDANSQIEKEEVAVEKAISHILDVQMKEAVDKLDRLEEIDLQMEKEFKQLDQMKSMLFVDQLNLLFRKGCIPTIEDK

Arabidopsis top hitse value%identityAlignment
AT2G33610.1 switch subunit 37.3e-1141.57Show/hide
Query:  GSTARSSFSVSSVDANSQIEKEEVAVEKAISHILDVQMKEAVDKLDRLEEIDLQMEKEFKQLDQMKSMLFVDQLNLLFRKGCIPTIEDK
        G T R+    +  DA S IEKEE  VE AI   ++V+MK+  D++   E++DL+ME+  KQL++++++LFVDQLN+ F        ED+
Subjt:  GSTARSSFSVSSVDANSQIEKEEVAVEKAISHILDVQMKEAVDKLDRLEEIDLQMEKEFKQLDQMKSMLFVDQLNLLFRKGCIPTIEDK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGATTGTCATATCTCTTCTGTTCTGATTCAGGAAACGACGTTGTATCCTGTGGAGGCAGCACTGCTAGGAGCTCATTTAGTGTGTCTTCGGTGGATGCAAACTCACA
GATTGAGAAAGAAGAGGTGGCTGTGGAGAAAGCAATATCTCATATACTAGACGTCCAAATGAAAGAGGCTGTAGATAAGCTTGATCGTCTGGAGGAGATAGACTTGCAGA
TGGAGAAGGAATTTAAGCAATTAGACCAAATGAAAAGCATGCTTTTTGTTGATCAACTGAATCTCTTATTCCGCAAAGGATGTATCCCTACCATCGAAGACAAGAACAGT
AAGAATCTAAGTACTTATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGATTGTCATATCTCTTCTGTTCTGATTCAGGAAACGACGTTGTATCCTGTGGAGGCAGCACTGCTAGGAGCTCATTTAGTGTGTCTTCGGTGGATGCAAACTCACA
GATTGAGAAAGAAGAGGTGGCTGTGGAGAAAGCAATATCTCATATACTAGACGTCCAAATGAAAGAGGCTGTAGATAAGCTTGATCGTCTGGAGGAGATAGACTTGCAGA
TGGAGAAGGAATTTAAGCAATTAGACCAAATGAAAAGCATGCTTTTTGTTGATCAACTGAATCTCTTATTCCGCAAAGGATGTATCCCTACCATCGAAGACAAGAACAGT
AAGAATCTAAGTACTTATTGATCGTTTTCCCTAATTTAAGCAATGTTTCTTTCTTTTACTTCTGCAACATCCCATTTTAAGAGTTAAATGCTTATCACCGATATTTCCTG
CTCAATTTATTCAATTGCATTGTGCTCAAAGTAACGCAACCAGACGTAACTGTTGGTTTTAGATCGATTGTTTATTTGCTAAAAATAGGTTTTCTACCAGGTCAACAAAA
TTAAGGACGTGGAAGTTTCTTAATTTAAAAGCGTTCCAAAATATGTTCACGTATACTCTTCCTTTACAAATTTTAAATAACAAGAAAC
Protein sequenceShow/hide protein sequence
MGLSYLFCSDSGNDVVSCGGSTARSSFSVSSVDANSQIEKEEVAVEKAISHILDVQMKEAVDKLDRLEEIDLQMEKEFKQLDQMKSMLFVDQLNLLFRKGCIPTIEDKNS
KNLSTY