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Carg08676 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg08676
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionBRCA1-A complex subunit BRE
Genome locationCarg_Chr09:459067..461662
RNA-Seq ExpressionCarg08676
SyntenyCarg08676
Gene Ontology termsGO:0006302 - double-strand break repair (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0070531 - BRCA1-A complex (cellular component)
GO:0070552 - BRISC complex (cellular component)
InterPro domainsIPR010358 - BRCA1-A complex subunit BRE


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6591268.1 BRISC and BRCA1-A complex member 2, partial [Cucurbita argyrosperma subsp. sororia]2.9e-6399.19Show/hide
Query:  KVLEAVSLIDVRRGFIEALDSFFGRPLEADPVFCRTATVITASGVFTFLAHFLISSQFPKKQPSLVLRSSQHFNSHGAPIKSQLITDYPWSPRWEPLQMA
        +VLEAVSLIDVRRGFIEALDSFFGRPLEADPVFCRTATVITASGVFTFLAHFLISSQFPKKQPSLVLRSSQHFNSHGAPIKSQLITDYPWSPRWEPLQMA
Subjt:  KVLEAVSLIDVRRGFIEALDSFFGRPLEADPVFCRTATVITASGVFTFLAHFLISSQFPKKQPSLVLRSSQHFNSHGAPIKSQLITDYPWSPRWEPLQMA

Query:  ERIFEFLADEALSFKRYCNEAQLQ
        ERIFEFLADEALSFKRYCNEAQLQ
Subjt:  ERIFEFLADEALSFKRYCNEAQLQ

KAG7024152.1 BRISC and BRCA1-A complex member 2, partial [Cucurbita argyrosperma subsp. argyrosperma]3.4e-64100Show/hide
Query:  MKVLEAVSLIDVRRGFIEALDSFFGRPLEADPVFCRTATVITASGVFTFLAHFLISSQFPKKQPSLVLRSSQHFNSHGAPIKSQLITDYPWSPRWEPLQM
        MKVLEAVSLIDVRRGFIEALDSFFGRPLEADPVFCRTATVITASGVFTFLAHFLISSQFPKKQPSLVLRSSQHFNSHGAPIKSQLITDYPWSPRWEPLQM
Subjt:  MKVLEAVSLIDVRRGFIEALDSFFGRPLEADPVFCRTATVITASGVFTFLAHFLISSQFPKKQPSLVLRSSQHFNSHGAPIKSQLITDYPWSPRWEPLQM

Query:  AERIFEFLADEALSFKRYCNEAQLQ
        AERIFEFLADEALSFKRYCNEAQLQ
Subjt:  AERIFEFLADEALSFKRYCNEAQLQ

XP_022937101.1 BRISC and BRCA1-A complex member 2-like [Cucurbita moschata]8.3e-6398.39Show/hide
Query:  KVLEAVSLIDVRRGFIEALDSFFGRPLEADPVFCRTATVITASGVFTFLAHFLISSQFPKKQPSLVLRSSQHFNSHGAPIKSQLITDYPWSPRWEPLQMA
        +VLEAVSLIDVRRGFIEALDSFFGRPLEADPVFCRTATVITASGVFTFLAHFLISSQFPKKQPSLVL+SSQHFNSHGAPIKSQLITDYPWSPRWEPLQMA
Subjt:  KVLEAVSLIDVRRGFIEALDSFFGRPLEADPVFCRTATVITASGVFTFLAHFLISSQFPKKQPSLVLRSSQHFNSHGAPIKSQLITDYPWSPRWEPLQMA

Query:  ERIFEFLADEALSFKRYCNEAQLQ
        ERIFEFLADEALSFKRYCNEAQLQ
Subjt:  ERIFEFLADEALSFKRYCNEAQLQ

XP_022975654.1 BRISC and BRCA1-A complex member 2-like [Cucurbita maxima]8.3e-6398.39Show/hide
Query:  KVLEAVSLIDVRRGFIEALDSFFGRPLEADPVFCRTATVITASGVFTFLAHFLISSQFPKKQPSLVLRSSQHFNSHGAPIKSQLITDYPWSPRWEPLQMA
        +VLEAVSLIDVRRGFIEALDSFFGRPLEADPVFCRTATVITASGVFTFLAHFLISSQFPKKQPSLVL+SSQHFNSHGAPIKSQLITDYPWSPRWEPLQMA
Subjt:  KVLEAVSLIDVRRGFIEALDSFFGRPLEADPVFCRTATVITASGVFTFLAHFLISSQFPKKQPSLVLRSSQHFNSHGAPIKSQLITDYPWSPRWEPLQMA

Query:  ERIFEFLADEALSFKRYCNEAQLQ
        ERIFEFLADEALSFKRYCNEAQLQ
Subjt:  ERIFEFLADEALSFKRYCNEAQLQ

XP_023535339.1 BRISC and BRCA1-A complex member 2-like [Cucurbita pepo subsp. pepo]1.9e-6297.58Show/hide
Query:  KVLEAVSLIDVRRGFIEALDSFFGRPLEADPVFCRTATVITASGVFTFLAHFLISSQFPKKQPSLVLRSSQHFNSHGAPIKSQLITDYPWSPRWEPLQMA
        +VLEAVSLIDVRRGFIEALDSFFGRPLEADPVFCRTATVITASGVFTFLAHFLISSQFPKKQPSLVL+SSQHFNSHGAPIKSQLITDYPWSPRWEPLQM+
Subjt:  KVLEAVSLIDVRRGFIEALDSFFGRPLEADPVFCRTATVITASGVFTFLAHFLISSQFPKKQPSLVLRSSQHFNSHGAPIKSQLITDYPWSPRWEPLQMA

Query:  ERIFEFLADEALSFKRYCNEAQLQ
        ERIFEFLADEALSFKRYCNEAQLQ
Subjt:  ERIFEFLADEALSFKRYCNEAQLQ

TrEMBL top hitse value%identityAlignment
A0A1S3CSN0 BRCA1-A complex subunit BRE2.4e-6094.35Show/hide
Query:  KVLEAVSLIDVRRGFIEALDSFFGRPLEADPVFCRTATVITASGVFTFLAHFLISSQFPKKQPSLVLRSSQHFNSHGAPIKSQLITDYPWSPRWEPLQMA
        +VLEAVSLIDVRRGFIEALD+FFGRPLEADPVFCRTATVITASGVFTFL H LIS+QFPKKQPSLVL+SSQHFNS GAPIKSQLITDYPWSPRWEPLQMA
Subjt:  KVLEAVSLIDVRRGFIEALDSFFGRPLEADPVFCRTATVITASGVFTFLAHFLISSQFPKKQPSLVLRSSQHFNSHGAPIKSQLITDYPWSPRWEPLQMA

Query:  ERIFEFLADEALSFKRYCNEAQLQ
        ERIFEFLADEALSFKRYCNEAQLQ
Subjt:  ERIFEFLADEALSFKRYCNEAQLQ

A0A5A7VCG0 BRCA1-A complex subunit BRE2.4e-6094.35Show/hide
Query:  KVLEAVSLIDVRRGFIEALDSFFGRPLEADPVFCRTATVITASGVFTFLAHFLISSQFPKKQPSLVLRSSQHFNSHGAPIKSQLITDYPWSPRWEPLQMA
        +VLEAVSLIDVRRGFIEALD+FFGRPLEADPVFCRTATVITASGVFTFL H LIS+QFPKKQPSLVL+SSQHFNS GAPIKSQLITDYPWSPRWEPLQMA
Subjt:  KVLEAVSLIDVRRGFIEALDSFFGRPLEADPVFCRTATVITASGVFTFLAHFLISSQFPKKQPSLVLRSSQHFNSHGAPIKSQLITDYPWSPRWEPLQMA

Query:  ERIFEFLADEALSFKRYCNEAQLQ
        ERIFEFLADEALSFKRYCNEAQLQ
Subjt:  ERIFEFLADEALSFKRYCNEAQLQ

A0A5D3E738 BRCA1-A complex subunit BRE2.4e-6094.35Show/hide
Query:  KVLEAVSLIDVRRGFIEALDSFFGRPLEADPVFCRTATVITASGVFTFLAHFLISSQFPKKQPSLVLRSSQHFNSHGAPIKSQLITDYPWSPRWEPLQMA
        +VLEAVSLIDVRRGFIEALD+FFGRPLEADPVFCRTATVITASGVFTFL H LIS+QFPKKQPSLVL+SSQHFNS GAPIKSQLITDYPWSPRWEPLQMA
Subjt:  KVLEAVSLIDVRRGFIEALDSFFGRPLEADPVFCRTATVITASGVFTFLAHFLISSQFPKKQPSLVLRSSQHFNSHGAPIKSQLITDYPWSPRWEPLQMA

Query:  ERIFEFLADEALSFKRYCNEAQLQ
        ERIFEFLADEALSFKRYCNEAQLQ
Subjt:  ERIFEFLADEALSFKRYCNEAQLQ

A0A6J1F9E9 BRCA1-A complex subunit BRE4.0e-6398.39Show/hide
Query:  KVLEAVSLIDVRRGFIEALDSFFGRPLEADPVFCRTATVITASGVFTFLAHFLISSQFPKKQPSLVLRSSQHFNSHGAPIKSQLITDYPWSPRWEPLQMA
        +VLEAVSLIDVRRGFIEALDSFFGRPLEADPVFCRTATVITASGVFTFLAHFLISSQFPKKQPSLVL+SSQHFNSHGAPIKSQLITDYPWSPRWEPLQMA
Subjt:  KVLEAVSLIDVRRGFIEALDSFFGRPLEADPVFCRTATVITASGVFTFLAHFLISSQFPKKQPSLVLRSSQHFNSHGAPIKSQLITDYPWSPRWEPLQMA

Query:  ERIFEFLADEALSFKRYCNEAQLQ
        ERIFEFLADEALSFKRYCNEAQLQ
Subjt:  ERIFEFLADEALSFKRYCNEAQLQ

A0A6J1IL78 BRCA1-A complex subunit BRE4.0e-6398.39Show/hide
Query:  KVLEAVSLIDVRRGFIEALDSFFGRPLEADPVFCRTATVITASGVFTFLAHFLISSQFPKKQPSLVLRSSQHFNSHGAPIKSQLITDYPWSPRWEPLQMA
        +VLEAVSLIDVRRGFIEALDSFFGRPLEADPVFCRTATVITASGVFTFLAHFLISSQFPKKQPSLVL+SSQHFNSHGAPIKSQLITDYPWSPRWEPLQMA
Subjt:  KVLEAVSLIDVRRGFIEALDSFFGRPLEADPVFCRTATVITASGVFTFLAHFLISSQFPKKQPSLVLRSSQHFNSHGAPIKSQLITDYPWSPRWEPLQMA

Query:  ERIFEFLADEALSFKRYCNEAQLQ
        ERIFEFLADEALSFKRYCNEAQLQ
Subjt:  ERIFEFLADEALSFKRYCNEAQLQ

SwissProt top hitse value%identityAlignment
A6QQW8 BRISC and BRCA1-A complex member 28.8e-0736.96Show/hide
Query:  RRGFIEALDSFFGR-PLEADPVFCRTATVITASGVFTFLAHFLISSQFPKKQPSLVLRSSQHFNSHGAPIKSQLITDYPWSPRWEPLQMAER
        RR +I A  S FG   +E D       T++     F FL H  +   FP+ QP+L  +S  HF + G  + SQ   +YP+SPRW+  +MA+R
Subjt:  RRGFIEALDSFFGR-PLEADPVFCRTATVITASGVFTFLAHFLISSQFPKKQPSLVLRSSQHFNSHGAPIKSQLITDYPWSPRWEPLQMAER

Q568D5 BRISC and BRCA1-A complex member 24.7e-0839.13Show/hide
Query:  RRGFIEALDSFFGR-PLEADPVFCRTATVITASGVFTFLAHFLISSQFPKKQPSLVLRSSQHFNSHGAPIKSQLITDYPWSPRWEPLQMAER
        RR +I A  S FG   +E D V     T++     F FL H  +   FP+ QP+L  +S  HF S G  + SQ+   YP+SPRW+  +MA+R
Subjt:  RRGFIEALDSFFGR-PLEADPVFCRTATVITASGVFTFLAHFLISSQFPKKQPSLVLRSSQHFNSHGAPIKSQLITDYPWSPRWEPLQMAER

Q5ZML0 BRISC and BRCA1-A complex member 25.2e-0736.96Show/hide
Query:  RRGFIEALDSFFGR-PLEADPVFCRTATVITASGVFTFLAHFLISSQFPKKQPSLVLRSSQHFNSHGAPIKSQLITDYPWSPRWEPLQMAER
        RR +I A  S FG   +E D       T++     F FL H  +   FP+ QP+L  +S  HF + G  + SQ   +YP+SPRW+  +MA+R
Subjt:  RRGFIEALDSFFGR-PLEADPVFCRTATVITASGVFTFLAHFLISSQFPKKQPSLVLRSSQHFNSHGAPIKSQLITDYPWSPRWEPLQMAER

Q6DJ78 BRISC and BRCA1-A complex member 23.0e-0736.96Show/hide
Query:  RRGFIEALDSFFGR-PLEADPVFCRTATVITASGVFTFLAHFLISSQFPKKQPSLVLRSSQHFNSHGAPIKSQLITDYPWSPRWEPLQMAER
        RR +I A  S FG   +E D       T++ +   F FL H  +   FP+ QP+L  +S  HF + G  + SQ   +YP+SPRW+  +MA+R
Subjt:  RRGFIEALDSFFGR-PLEADPVFCRTATVITASGVFTFLAHFLISSQFPKKQPSLVLRSSQHFNSHGAPIKSQLITDYPWSPRWEPLQMAER

Q6P7Q1 BRISC and BRCA1-A complex member 26.7e-0736.96Show/hide
Query:  RRGFIEALDSFFGR-PLEADPVFCRTATVITASGVFTFLAHFLISSQFPKKQPSLVLRSSQHFNSHGAPIKSQLITDYPWSPRWEPLQMAER
        RR +I A  S FG   +E D       T++     F FL H  +   FP+ QP+L  +S  HF + G  + SQ   +YP+SPRW+  +MA+R
Subjt:  RRGFIEALDSFFGR-PLEADPVFCRTATVITASGVFTFLAHFLISSQFPKKQPSLVLRSSQHFNSHGAPIKSQLITDYPWSPRWEPLQMAER

Arabidopsis top hitse value%identityAlignment
AT5G42470.1 CONTAINS InterPro DOMAIN/s: Brain/reproductive organ-expressed protein (InterPro:IPR010358); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).7.8e-4362.1Show/hide
Query:  KVLEAVSLIDVRRGFIEALDSFFGRPLEADPVFCRTATVITASGVFTFLAHFLISSQFPKKQPSLVLRSSQHFNSHGAPIKSQLITDYPWSPRWEPLQMA
        ++ EAV+ ID+RR FIEAL    GRPLEADP FCR AT + ASG FTF+ HF  S+QFPK+QP+L+L+S QH N    P+KS L+T+YPWSPRWE  +MA
Subjt:  KVLEAVSLIDVRRGFIEALDSFFGRPLEADPVFCRTATVITASGVFTFLAHFLISSQFPKKQPSLVLRSSQHFNSHGAPIKSQLITDYPWSPRWEPLQMA

Query:  ERIFEFLADEALSFKRYCNEAQLQ
        ER+ +FL DEA++FK+YCNEA LQ
Subjt:  ERIFEFLADEALSFKRYCNEAQLQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGGTTCTGGAGGCAGTTTCATTGATTGATGTTAGGAGAGGCTTTATAGAGGCGTTGGACTCCTTCTTTGGAAGGCCTTTAGAAGCTGACCCGGTGTTCTGTCGAAC
GGCTACAGTTATCACTGCCTCTGGGGTGTTCACATTCCTGGCGCACTTCCTCATTTCAAGCCAATTTCCGAAGAAGCAGCCTTCTCTGGTGCTGCGAAGTTCTCAGCATT
TCAACTCCCATGGTGCGCCCATCAAGTCGCAGCTTATTACCGACTATCCTTGGAGTCCTAGGTGGGAGCCATTGCAAATGGCTGAGCGGATTTTCGAGTTTCTGGCTGAC
GAGGCTTTGAGCTTCAAGAGGTACTGCAATGAGGCTCAACTTCAATGA
mRNA sequenceShow/hide mRNA sequence
ATGAAGGTTCTGGAGGCAGTTTCATTGATTGATGTTAGGAGAGGCTTTATAGAGGCGTTGGACTCCTTCTTTGGAAGGCCTTTAGAAGCTGACCCGGTGTTCTGTCGAAC
GGCTACAGTTATCACTGCCTCTGGGGTGTTCACATTCCTGGCGCACTTCCTCATTTCAAGCCAATTTCCGAAGAAGCAGCCTTCTCTGGTGCTGCGAAGTTCTCAGCATT
TCAACTCCCATGGTGCGCCCATCAAGTCGCAGCTTATTACCGACTATCCTTGGAGTCCTAGGTGGGAGCCATTGCAAATGGCTGAGCGGATTTTCGAGTTTCTGGCTGAC
GAGGCTTTGAGCTTCAAGAGGTACTGCAATGAGGCTCAACTTCAATGA
Protein sequenceShow/hide protein sequence
MKVLEAVSLIDVRRGFIEALDSFFGRPLEADPVFCRTATVITASGVFTFLAHFLISSQFPKKQPSLVLRSSQHFNSHGAPIKSQLITDYPWSPRWEPLQMAERIFEFLAD
EALSFKRYCNEAQLQ