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Carg08678 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg08678
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionAP complex subunit sigma
Genome locationCarg_Chr09:467041..468112
RNA-Seq ExpressionCarg08678
SyntenyCarg08678
Gene Ontology termsGO:0001678 - cellular glucose homeostasis (biological process)
GO:0006096 - glycolytic process (biological process)
GO:0006886 - intracellular protein transport (biological process)
GO:0019318 - hexose metabolic process (biological process)
GO:0046835 - carbohydrate phosphorylation (biological process)
GO:0051156 - glucose 6-phosphate metabolic process (biological process)
GO:0072583 - clathrin-dependent endocytosis (biological process)
GO:0030122 - AP-2 adaptor complex (cellular component)
GO:0004340 - glucokinase activity (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0005536 - glucose binding (molecular function)
GO:0035615 - clathrin adaptor activity (molecular function)
InterPro domainsIPR011012 - Longin-like domain superfamily
IPR016635 - Adaptor protein complex, sigma subunit
IPR022775 - AP complex, mu/sigma subunit


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7024154.1 AP-2 complex subunit sigma, partial [Cucurbita argyrosperma subsp. argyrosperma]4.1e-53100Show/hide
Query:  MLSSRFYVSSSLLQSPPLLQFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAGELQETSKKAI
        MLSSRFYVSSSLLQSPPLLQFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAGELQETSKKAI
Subjt:  MLSSRFYVSSSLLQSPPLLQFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAGELQETSKKAI

Query:  IERMGELEKLE
        IERMGELEKLE
Subjt:  IERMGELEKLE

XP_004291364.1 PREDICTED: AP-2 complex subunit sigma [Fragaria vesca subsp. vesca]1.1e-4297.85Show/hide
Query:  LQFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAGELQETSKKAIIERMGELEKLE
        ++FRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAGELQETSKKAIIERMGELEKLE
Subjt:  LQFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAGELQETSKKAIIERMGELEKLE

XP_012449814.1 PREDICTED: AP-2 complex subunit sigma isoform X1 [Gossypium raimondii]1.1e-4297.85Show/hide
Query:  LQFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAGELQETSKKAIIERMGELEKLE
        ++FRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAGELQETSKKAIIERMGELEKLE
Subjt:  LQFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAGELQETSKKAIIERMGELEKLE

XP_015969839.1 AP-2 complex subunit sigma isoform X3 [Arachis duranensis]1.0e-4386.36Show/hide
Query:  SSRFYVSSSLLQSP-PLLQFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAGELQETSKKAII
        S+  +++S L+++P  L+  RTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAGELQETSKKAII
Subjt:  SSRFYVSSSLLQSP-PLLQFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAGELQETSKKAII

Query:  ERMGELEKLE
        ERMGELEKLE
Subjt:  ERMGELEKLE

XP_016204798.1 AP-2 complex subunit sigma isoform X3 [Arachis ipaensis]2.2e-4386.36Show/hide
Query:  SSRFYVSSSLLQSP-PLLQFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAGELQETSKKAII
        S+  +++S L+++P  L   RTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAGELQETSKKAII
Subjt:  SSRFYVSSSLLQSP-PLLQFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAGELQETSKKAII

Query:  ERMGELEKLE
        ERMGELEKLE
Subjt:  ERMGELEKLE

TrEMBL top hitse value%identityAlignment
A0A0B0NTC3 AP complex subunit sigma5.4e-4397.85Show/hide
Query:  LQFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAGELQETSKKAIIERMGELEKLE
        ++FRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAGELQETSKKAIIERMGELEKLE
Subjt:  LQFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAGELQETSKKAIIERMGELEKLE

A0A2P2MI97 AP complex subunit sigma1.4e-4398.92Show/hide
Query:  LQFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAGELQETSKKAIIERMGELEKLE
        LQFRTHK+IYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAGELQETSKKAIIERMGELEKLE
Subjt:  LQFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAGELQETSKKAIIERMGELEKLE

A0A5D2C5N0 AP complex subunit sigma5.4e-4397.85Show/hide
Query:  LQFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAGELQETSKKAIIERMGELEKLE
        ++FRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAGELQETSKKAIIERMGELEKLE
Subjt:  LQFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAGELQETSKKAIIERMGELEKLE

A0A6P4DNT9 AP-2 complex subunit sigma isoform X34.9e-4486.36Show/hide
Query:  SSRFYVSSSLLQSP-PLLQFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAGELQETSKKAII
        S+  +++S L+++P  L+  RTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAGELQETSKKAII
Subjt:  SSRFYVSSSLLQSP-PLLQFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAGELQETSKKAII

Query:  ERMGELEKLE
        ERMGELEKLE
Subjt:  ERMGELEKLE

M5XZ78 AP complex subunit sigma5.4e-4397.85Show/hide
Query:  LQFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAGELQETSKKAIIERMGELEKLE
        ++FRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAGELQETSKKAIIERMGELEKLE
Subjt:  LQFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAGELQETSKKAIIERMGELEKLE

SwissProt top hitse value%identityAlignment
O50016 AP-2 complex subunit sigma9.5e-3792.68Show/hide
Query:  LQFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKV--YLILDEFILAGELQETSKK
        ++FRTHKVIYRRYAGLFFS+CVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKV  YLILDEFILAGELQETSK+
Subjt:  LQFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKV--YLILDEFILAGELQETSKK

Q4WS49 AP-2 complex subunit sigma5.9e-3170Show/hide
Query:  RTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAGELQETSKKAIIERMGELEKLE
        R+ K++YRRYAGLFF +CVD TDNELAYLE IH FVE+LD FF NVCELDLVFNF+KVY ILDE  LAGE++ETSK+ ++ R+  L+KLE
Subjt:  RTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAGELQETSKKAIIERMGELEKLE

Q5BFF8 AP-2 complex subunit sigma1.0e-3070Show/hide
Query:  RTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAGELQETSKKAIIERMGELEKLE
        R+ K++YRRYAGLFF  CVD TDNELAYLE IH FVE+LD FF NVCELDLVFNF+KVY ILDE  LAGE++ETSK+ ++ R+  L+KLE
Subjt:  RTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAGELQETSKKAIIERMGELEKLE

Q7SAQ1 AP-2 complex subunit sigma4.1e-3269.89Show/hide
Query:  LQFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAGELQETSKKAIIERMGELEKLE
        ++FR HKV+YRRYAGLFF  CVD  DNELAYLE IH FVE+LD FF NVCELDLVFNF+KVY ILDE  LAGE++ETSK+ ++ R+  L+KLE
Subjt:  LQFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAGELQETSKKAIIERMGELEKLE

Q84WL9 AP-2 complex subunit sigma1.2e-4292.47Show/hide
Query:  LQFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAGELQETSKKAIIERMGELEKLE
        ++FRTHKVIYRRYAGLFFS+CVDITDNELAYLE IHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAGELQETSK+AIIERM ELEKL+
Subjt:  LQFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAGELQETSKKAIIERMGELEKLE

Arabidopsis top hitse value%identityAlignment
AT1G47830.1 SNARE-like superfamily protein8.2e-4492.47Show/hide
Query:  LQFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAGELQETSKKAIIERMGELEKLE
        ++FRTHKVIYRRYAGLFFS+CVDITDNELAYLE IHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAGELQETSK+AIIERM ELEKL+
Subjt:  LQFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAGELQETSKKAIIERMGELEKLE

AT2G17380.1 associated protein 191.7e-2555.43Show/hide
Query:  LQFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAGELQETSKKAIIERMGELEKL
        +++R +KV+Y+RYA L+F +C+D  DNEL  LE IH +VEILD +F +VCELDL+FNFHK Y ILDE ++AGELQE+SKK +   +   ++L
Subjt:  LQFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAGELQETSKKAIIERMGELEKL

AT2G19790.1 SNARE-like superfamily protein7.7e-1844.79Show/hide
Query:  QSPPLLQFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAGELQETSKKAIIERMGELEK
        Q    ++ R +K++YRRYA LFF + VD  +NELA LE IHL VE +D  F NVCELD++F+  K + +L+E ++ G + ETSK  I+  +  ++K
Subjt:  QSPPLLQFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAGELQETSKKAIIERMGELEK

AT3G50860.1 Clathrin adaptor complex small chain family protein2.9e-1745.98Show/hide
Query:  KVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAGELQETSKKAIIERMGELEKLE
        +++Y+ YA L+F L  D ++NELA L+ I + VE LD  FSNVCELD+VFN+ K++ +LDE +  G++ ETS   +++ + E+ KLE
Subjt:  KVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAGELQETSKKAIIERMGELEKLE

AT4G35410.2 Clathrin adaptor complex small chain family protein2.9e-2555.43Show/hide
Query:  LQFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAGELQETSKKAIIERMGELEKL
        +++R +KV+Y+RYA L+F +C+D  DNEL  LE IH +VEILD +F +VCELDL+FNFHK Y ILDE ++AGELQE+SKK +   +   ++L
Subjt:  LQFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAGELQETSKKAIIERMGELEKL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTTCATCTCGTTTTTATGTAAGCTCTAGCTTATTGCAATCTCCACCGCTTTTGCAGTTCCGAACACACAAGGTCATCTACAGACGATATGCAGGATTGTTTTTCTC
CCTTTGTGTGGACATAACAGACAACGAGTTGGCCTATCTTGAGTGTATTCATTTGTTTGTGGAGATTCTGGATCATTTCTTCAGCAATGTGTGTGAGCTCGATTTGGTTT
TTAATTTTCACAAGGTCTATCTGATACTCGATGAATTTATTCTTGCTGGAGAACTCCAAGAAACGAGCAAAAAGGCGATTATTGAAAGAATGGGGGAACTGGAAAAGCTG
GAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGCTTTCATCTCGTTTTTATGTAAGCTCTAGCTTATTGCAATCTCCACCGCTTTTGCAGTTCCGAACACACAAGGTCATCTACAGACGATATGCAGGATTGTTTTTCTC
CCTTTGTGTGGACATAACAGACAACGAGTTGGCCTATCTTGAGTGTATTCATTTGTTTGTGGAGATTCTGGATCATTTCTTCAGCAATGTGTGTGAGCTCGATTTGGTTT
TTAATTTTCACAAGGTCTATCTGATACTCGATGAATTTATTCTTGCTGGAGAACTCCAAGAAACGAGCAAAAAGGCGATTATTGAAAGAATGGGGGAACTGGAAAAGCTG
GAGTGA
Protein sequenceShow/hide protein sequence
MLSSRFYVSSSLLQSPPLLQFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAGELQETSKKAIIERMGELEKL
E