CuGenDBv2

Gene ID	Carg08685
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	protein SPA, chloroplastic
Genome location	Carg_Chr09:487238..490301
RNA-Seq Expression	Carg08685
Synteny	Carg08685
Gene Ontology terms	GO:0010206 - photosystem II repair (biological process) GO:0009507 - chloroplast (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0003756 - protein disulfide isomerase activity (molecular function)
InterPro domains	IPR035272 - Protein of unknown function DUF5351

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7024161.1 Protein SPA, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]

1.2e-96

100

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Query:  MTVAPSLSRLHSPFLYCPLKPTSSASLSLTFSRNQRSPASYPRIRAIDLDQNTVVALSVGLASLAVGIGIPVFYETQIDNAAKRENTQPCFPCTGSGARK
        MTVAPSLSRLHSPFLYCPLKPTSSASLSLTFSRNQRSPASYPRIRAIDLDQNTVVALSVGLASLAVGIGIPVFYETQIDNAAKRENTQPCFPCTGSGARK
Subjt:  MTVAPSLSRLHSPFLYCPLKPTSSASLSLTFSRNQRSPASYPRIRAIDLDQNTVVALSVGLASLAVGIGIPVFYETQIDNAAKRENTQPCFPCTGSGARK

Query:  LIHCFKSPSFHEMILGKRCRFCMGTGNVTVELGGDEKEVSRCINCDGVGTLTCTTCQGSGIQPRYLDRREFKDDD
        LIHCFKSPSFHEMILGKRCRFCMGTGNVTVELGGDEKEVSRCINCDGVGTLTCTTCQGSGIQPRYLDRREFKDDD
Subjt:  LIHCFKSPSFHEMILGKRCRFCMGTGNVTVELGGDEKEVSRCINCDGVGTLTCTTCQGSGIQPRYLDRREFKDDD

XP_008466492.1 PREDICTED: protein SPA, chloroplastic [Cucumis melo]

9.8e-78

85.14

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Query:  MTVAPSLSRLHSPFLYCPLKPTSSASLSLTFSRNQRSPASYPRIRAIDLDQNTVVALSVGLASLAVGIGIPVFYETQIDNAAKRENTQPCFPCTGSGARK
        MTVAPSLSRLHSPFLYCPLKPTSS SLS+TFS NQRSP SYPRIRAIDLDQNTVVALSVGL S+AVGIGIPVFYETQIDNAAKRENTQPCFPC+GSGA  
Subjt:  MTVAPSLSRLHSPFLYCPLKPTSSASLSLTFSRNQRSPASYPRIRAIDLDQNTVVALSVGLASLAVGIGIPVFYETQIDNAAKRENTQPCFPCTGSGARK

Query:  LIHCFKSPSFHEMILGKRCRFCMGTGNVTVELGGDEKEVSRCINCDGVGTLTCTTCQGSGIQPRYLDRREFKDDD
                        +RCRFCMGTGNVTVELGGDEKEVSRCINCDGVGTLTCTTCQGSGIQPRYLDRREFKDDD
Subjt:  LIHCFKSPSFHEMILGKRCRFCMGTGNVTVELGGDEKEVSRCINCDGVGTLTCTTCQGSGIQPRYLDRREFKDDD

XP_022142253.1 protein SPA, chloroplastic [Momordica charantia]

1.7e-77

85.14

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Query:  MTVAPSLSRLHSPFLYCPLKPTSSASLSLTFSRNQRSPASYPRIRAIDLDQNTVVALSVGLASLAVGIGIPVFYETQIDNAAKRENTQPCFPCTGSGARK
        MT APSLSRLHSPFLY PLKPTS+ASLSLTFSRNQRSPASYPRIRAIDLDQNTVVALSVGL S+AVGIGIPVFYETQIDNAAKRENTQPCFPC+GSGA+K
Subjt:  MTVAPSLSRLHSPFLYCPLKPTSSASLSLTFSRNQRSPASYPRIRAIDLDQNTVVALSVGLASLAVGIGIPVFYETQIDNAAKRENTQPCFPCTGSGARK

Query:  LIHCFKSPSFHEMILGKRCRFCMGTGNVTVELGGDEKEVSRCINCDGVGTLTCTTCQGSGIQPRYLDRREFKDDD
                          CRFCMGTGNVTVELGGDEKEVSRCINC+GVGTLTCTTCQGSGIQPRYLDRREFKDDD
Subjt:  LIHCFKSPSFHEMILGKRCRFCMGTGNVTVELGGDEKEVSRCINCDGVGTLTCTTCQGSGIQPRYLDRREFKDDD

XP_022936404.1 protein SPA, chloroplastic [Cucurbita moschata]

3.3e-81

89.14

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Query:  MTVAPSLSRLHSPFLYCPLKPTSSASLSLTFSRNQRSPASYPRIRAIDLDQNTVVALSVGLASLAVGIGIPVFYETQIDNAAKRENTQPCFPCTGSGARK
        MTVAPSLSRLHSPFLYCPLKPTSSASLSLTFSRNQRSPASYPRIRAIDLDQNTVVALSVGLASLAVGIGIPVFYETQIDNAAKRENTQPCFPCTGSGA  
Subjt:  MTVAPSLSRLHSPFLYCPLKPTSSASLSLTFSRNQRSPASYPRIRAIDLDQNTVVALSVGLASLAVGIGIPVFYETQIDNAAKRENTQPCFPCTGSGARK

Query:  LIHCFKSPSFHEMILGKRCRFCMGTGNVTVELGGDEKEVSRCINCDGVGTLTCTTCQGSGIQPRYLDRREFKDDD
                        +RCRFCMGTGNVTVELGGDEKEVSRCINCDGVGTLTCTTCQGSGIQPRYLDRREFKDDD
Subjt:  LIHCFKSPSFHEMILGKRCRFCMGTGNVTVELGGDEKEVSRCINCDGVGTLTCTTCQGSGIQPRYLDRREFKDDD

XP_038899789.1 protein SPA, chloroplastic [Benincasa hispida]

5.8e-78

84.57

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Query:  MTVAPSLSRLHSPFLYCPLKPTSSASLSLTFSRNQRSPASYPRIRAIDLDQNTVVALSVGLASLAVGIGIPVFYETQIDNAAKRENTQPCFPCTGSGARK
        MTVAPS+SRLHSPFLYCPLKPTSS SLS+TFSRNQRSPA+YPRIRAIDLDQNTVVALSVGL S+AVGIGIPVFYETQIDNAAKRENTQPCFPC+GSGA  
Subjt:  MTVAPSLSRLHSPFLYCPLKPTSSASLSLTFSRNQRSPASYPRIRAIDLDQNTVVALSVGLASLAVGIGIPVFYETQIDNAAKRENTQPCFPCTGSGARK

Query:  LIHCFKSPSFHEMILGKRCRFCMGTGNVTVELGGDEKEVSRCINCDGVGTLTCTTCQGSGIQPRYLDRREFKDDD
                        +RCRFCMGTGNVTVELGGDEKEVSRCINCDG GTLTCTTCQGSGIQPRYLDRREFKDDD
Subjt:  LIHCFKSPSFHEMILGKRCRFCMGTGNVTVELGGDEKEVSRCINCDGVGTLTCTTCQGSGIQPRYLDRREFKDDD

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LJ55 Uncharacterized protein

5.3e-77

83.43

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Query:  MTVAPSLSRLHSPFLYCPLKPTSSASLSLTFSRNQRSPASYPRIRAIDLDQNTVVALSVGLASLAVGIGIPVFYETQIDNAAKRENTQPCFPCTGSGARK
        MTVAPSLSRLHSPFLYCPLKPT S SLS+TFS NQRSP SYPRIRAIDLDQNTVVALSVGL S+A+GIGIPVFYETQIDNAAKRENTQPCFPC+GSGA  
Subjt:  MTVAPSLSRLHSPFLYCPLKPTSSASLSLTFSRNQRSPASYPRIRAIDLDQNTVVALSVGLASLAVGIGIPVFYETQIDNAAKRENTQPCFPCTGSGARK

Query:  LIHCFKSPSFHEMILGKRCRFCMGTGNVTVELGGDEKEVSRCINCDGVGTLTCTTCQGSGIQPRYLDRREFKDDD
                        +RCRFCMGTGNVTVELGGD+KEVSRCINCDGVGTLTCTTCQGSGIQPRYLDRREFKDDD
Subjt:  LIHCFKSPSFHEMILGKRCRFCMGTGNVTVELGGDEKEVSRCINCDGVGTLTCTTCQGSGIQPRYLDRREFKDDD

A0A1S3CRE4 protein SPA, chloroplastic

4.8e-78

85.14

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Query:  MTVAPSLSRLHSPFLYCPLKPTSSASLSLTFSRNQRSPASYPRIRAIDLDQNTVVALSVGLASLAVGIGIPVFYETQIDNAAKRENTQPCFPCTGSGARK
        MTVAPSLSRLHSPFLYCPLKPTSS SLS+TFS NQRSP SYPRIRAIDLDQNTVVALSVGL S+AVGIGIPVFYETQIDNAAKRENTQPCFPC+GSGA  
Subjt:  MTVAPSLSRLHSPFLYCPLKPTSSASLSLTFSRNQRSPASYPRIRAIDLDQNTVVALSVGLASLAVGIGIPVFYETQIDNAAKRENTQPCFPCTGSGARK

Query:  LIHCFKSPSFHEMILGKRCRFCMGTGNVTVELGGDEKEVSRCINCDGVGTLTCTTCQGSGIQPRYLDRREFKDDD
                        +RCRFCMGTGNVTVELGGDEKEVSRCINCDGVGTLTCTTCQGSGIQPRYLDRREFKDDD
Subjt:  LIHCFKSPSFHEMILGKRCRFCMGTGNVTVELGGDEKEVSRCINCDGVGTLTCTTCQGSGIQPRYLDRREFKDDD

A0A6J1CMU6 protein SPA, chloroplastic

8.1e-78

85.14

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Query:  MTVAPSLSRLHSPFLYCPLKPTSSASLSLTFSRNQRSPASYPRIRAIDLDQNTVVALSVGLASLAVGIGIPVFYETQIDNAAKRENTQPCFPCTGSGARK
        MT APSLSRLHSPFLY PLKPTS+ASLSLTFSRNQRSPASYPRIRAIDLDQNTVVALSVGL S+AVGIGIPVFYETQIDNAAKRENTQPCFPC+GSGA+K
Subjt:  MTVAPSLSRLHSPFLYCPLKPTSSASLSLTFSRNQRSPASYPRIRAIDLDQNTVVALSVGLASLAVGIGIPVFYETQIDNAAKRENTQPCFPCTGSGARK

Query:  LIHCFKSPSFHEMILGKRCRFCMGTGNVTVELGGDEKEVSRCINCDGVGTLTCTTCQGSGIQPRYLDRREFKDDD
                          CRFCMGTGNVTVELGGDEKEVSRCINC+GVGTLTCTTCQGSGIQPRYLDRREFKDDD
Subjt:  LIHCFKSPSFHEMILGKRCRFCMGTGNVTVELGGDEKEVSRCINCDGVGTLTCTTCQGSGIQPRYLDRREFKDDD

A0A6J1F877 protein SPA, chloroplastic

1.6e-81

89.14

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Query:  MTVAPSLSRLHSPFLYCPLKPTSSASLSLTFSRNQRSPASYPRIRAIDLDQNTVVALSVGLASLAVGIGIPVFYETQIDNAAKRENTQPCFPCTGSGARK
        MTVAPSLSRLHSPFLYCPLKPTSSASLSLTFSRNQRSPASYPRIRAIDLDQNTVVALSVGLASLAVGIGIPVFYETQIDNAAKRENTQPCFPCTGSGA  
Subjt:  MTVAPSLSRLHSPFLYCPLKPTSSASLSLTFSRNQRSPASYPRIRAIDLDQNTVVALSVGLASLAVGIGIPVFYETQIDNAAKRENTQPCFPCTGSGARK

Query:  LIHCFKSPSFHEMILGKRCRFCMGTGNVTVELGGDEKEVSRCINCDGVGTLTCTTCQGSGIQPRYLDRREFKDDD
                        +RCRFCMGTGNVTVELGGDEKEVSRCINCDGVGTLTCTTCQGSGIQPRYLDRREFKDDD
Subjt:  LIHCFKSPSFHEMILGKRCRFCMGTGNVTVELGGDEKEVSRCINCDGVGTLTCTTCQGSGIQPRYLDRREFKDDD

A0A6J1IFD3 protein SPA, chloroplastic

1.6e-81

89.14

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Query:  MTVAPSLSRLHSPFLYCPLKPTSSASLSLTFSRNQRSPASYPRIRAIDLDQNTVVALSVGLASLAVGIGIPVFYETQIDNAAKRENTQPCFPCTGSGARK
        MTVAPSLSRLHSPFLYCPLKPTSSASLSLTFSRNQRSPASYPRIRAIDLDQNTVVALSVGLASLAVGIGIPVFYETQIDNAAKRENTQPCFPCTGSGA  
Subjt:  MTVAPSLSRLHSPFLYCPLKPTSSASLSLTFSRNQRSPASYPRIRAIDLDQNTVVALSVGLASLAVGIGIPVFYETQIDNAAKRENTQPCFPCTGSGARK

Query:  LIHCFKSPSFHEMILGKRCRFCMGTGNVTVELGGDEKEVSRCINCDGVGTLTCTTCQGSGIQPRYLDRREFKDDD
                        +RCRFCMGTGNVTVELGGDEKEVSRCINCDGVGTLTCTTCQGSGIQPRYLDRREFKDDD
Subjt:  LIHCFKSPSFHEMILGKRCRFCMGTGNVTVELGGDEKEVSRCINCDGVGTLTCTTCQGSGIQPRYLDRREFKDDD

SwissProt top hits

e value

%identity

Alignment

K4BVL1 Protein SPA, chloroplastic

1.1e-60

67.23

Show/hide

Query:  MTVAPSLSRLHSPFLYCPLK-PT-SSASLSLTFSRNQRSPASYPRIRAIDLDQNTVVALSVGLASLAVGIGIPVFYETQIDNAAKRENTQPCFPCTGSGA
        M  APSLSR  SPF+  PLK PT SS+  +  F +  R   SYP I+A+DLDQNTV+A++VG+ S+A+G+GIPVFYETQIDNAAKRENTQPCFPCTG+GA
Subjt:  MTVAPSLSRLHSPFLYCPLK-PT-SSASLSLTFSRNQRSPASYPRIRAIDLDQNTVVALSVGLASLAVGIGIPVFYETQIDNAAKRENTQPCFPCTGSGA

Query:  RKLIHCFKSPSFHEMILGKRCRFCMGTGNVTVELGGDEKEVSRCINCDGVGTLTCTTCQGSGIQPRYLDRREFKDDD
        +K                  CRFCMGTG+VTVELGG E EVSRCINCDG G LTCTTCQGSGIQPRYLDRREFKDDD
Subjt:  RKLIHCFKSPSFHEMILGKRCRFCMGTGNVTVELGGDEKEVSRCINCDGVGTLTCTTCQGSGIQPRYLDRREFKDDD

Q8GSJ6 Protein disulfide-isomerase LQY1, chloroplastic

2.1e-59

67.63

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Query:  APSLSRLHSPFLYCPLKPTSSASLSLTFSRNQRSPA-SYPRIRAIDLDQNTVVALSVGLASLAVGIGIPVFYETQIDNAAKRENTQPCFPCTGSGARKLI
        APS  RLHSPF++CP+  T S+      +RN RSP+ SYPRI+A +LD NTVVA+SVG+AS+A+GIGIPVFYETQIDNAAKRENTQPCFPC G+GA+K  
Subjt:  APSLSRLHSPFLYCPLKPTSSASLSLTFSRNQRSPA-SYPRIRAIDLDQNTVVALSVGLASLAVGIGIPVFYETQIDNAAKRENTQPCFPCTGSGARKLI

Query:  HCFKSPSFHEMILGKRCRFCMGTGNVTVELGGDEKEVSRCINCDGVGTLTCTTCQGSGIQPRYLDRREFKDDD
                        CR C+G+GNVTVELGG EKEVS CINCDG G+LTCTTCQGSG+QPRYLDRREFKDDD
Subjt:  HCFKSPSFHEMILGKRCRFCMGTGNVTVELGGDEKEVSRCINCDGVGTLTCTTCQGSGIQPRYLDRREFKDDD

Arabidopsis top hits

e value

%identity

Alignment

AT1G75690.1 DnaJ/Hsp40 cysteine-rich domain superfamily protein

1.5e-60

67.63

Show/hide

Query:  APSLSRLHSPFLYCPLKPTSSASLSLTFSRNQRSPA-SYPRIRAIDLDQNTVVALSVGLASLAVGIGIPVFYETQIDNAAKRENTQPCFPCTGSGARKLI
        APS  RLHSPF++CP+  T S+      +RN RSP+ SYPRI+A +LD NTVVA+SVG+AS+A+GIGIPVFYETQIDNAAKRENTQPCFPC G+GA+K  
Subjt:  APSLSRLHSPFLYCPLKPTSSASLSLTFSRNQRSPA-SYPRIRAIDLDQNTVVALSVGLASLAVGIGIPVFYETQIDNAAKRENTQPCFPCTGSGARKLI

Query:  HCFKSPSFHEMILGKRCRFCMGTGNVTVELGGDEKEVSRCINCDGVGTLTCTTCQGSGIQPRYLDRREFKDDD
                        CR C+G+GNVTVELGG EKEVS CINCDG G+LTCTTCQGSG+QPRYLDRREFKDDD
Subjt:  HCFKSPSFHEMILGKRCRFCMGTGNVTVELGGDEKEVSRCINCDGVGTLTCTTCQGSGIQPRYLDRREFKDDD

AT2G38000.1 chaperone protein dnaJ-related

3.7e-06

32.97

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Query:  FYETQIDNAAKRENTQPCFPCTGSGARKLIHCFK--SPSFHEMILGKRCRFCMGTGNVTVELGGDEKEVSRCINCDGVGTLTCTTCQGSGI
        + ETQ+      E  + C  CTG G      C     P F++     +C  C G G V  + G D    + C NC+G G L C TCQ  G+
Subjt:  FYETQIDNAAKRENTQPCFPCTGSGARKLIHCFK--SPSFHEMILGKRCRFCMGTGNVTVELGGDEKEVSRCINCDGVGTLTCTTCQGSGI

Sequences

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CDS sequence

Show/hide CDS sequence

ATGACAGTAGCACCTTCGCTTTCTCGCCTCCACTCCCCATTTCTGTATTGTCCTCTCAAGCCGACTTCTTCTGCCTCTCTATCCCTTACCTTCTCCAGAAATCAACGATC
GCCAGCATCATATCCACGCATCAGAGCTATAGATCTTGACCAAAATACGGTGGTGGCACTTTCAGTGGGGCTAGCGAGTTTGGCAGTTGGAATAGGCATTCCGGTCTTCT
ATGAAACCCAAATTGATAATGCTGCAAAGCGTGAAAATACTCAGCCCTGCTTTCCCTGCACTGGTTCGGGGGCACGTAAGTTAATTCACTGCTTCAAGAGTCCATCTTTT
CATGAAATGATTTTAGGAAAGAGATGCAGATTTTGCATGGGAACTGGCAATGTGACCGTAGAACTTGGTGGAGATGAAAAGGAAGTCTCCCGATGTATTAATTGTGATGG
AGTTGGCACATTGACATGCACTACATGTCAGGGCTCAGGAATTCAACCTCGATACCTAGATCGCAGAGAATTTAAAGATGATGATTGA

mRNA sequence

Show/hide mRNA sequence

TGAAATGCGTGGTGAAGCTTTGTAGCTTTGAAACAAACTACAGCCTCAAGTATTTCTTCAGGAATTAGAACTGAGACCCTCTTTCTATCTCCCTGATTCGGAGCTGCTCT
CAGAAGCAAAGCAATCGAATCCAAGGAATTCAGAAATGACAGTAGCACCTTCGCTTTCTCGCCTCCACTCCCCATTTCTGTATTGTCCTCTCAAGCCGACTTCTTCTGCC
TCTCTATCCCTTACCTTCTCCAGAAATCAACGATCGCCAGCATCATATCCACGCATCAGAGCTATAGATCTTGACCAAAATACGGTGGTGGCACTTTCAGTGGGGCTAGC
GAGTTTGGCAGTTGGAATAGGCATTCCGGTCTTCTATGAAACCCAAATTGATAATGCTGCAAAGCGTGAAAATACTCAGCCCTGCTTTCCCTGCACTGGTTCGGGGGCAC
GTAAGTTAATTCACTGCTTCAAGAGTCCATCTTTTCATGAAATGATTTTAGGAAAGAGATGCAGATTTTGCATGGGAACTGGCAATGTGACCGTAGAACTTGGTGGAGAT
GAAAAGGAAGTCTCCCGATGTATTAATTGTGATGGAGTTGGCACATTGACATGCACTACATGTCAGGGCTCAGGAATTCAACCTCGATACCTAGATCGCAGAGAATTTAA
AGATGATGATTGAAGCCCAGCAGAACCAAATCCAGCAACATCCGCTGATTTTGCTTTCAGTTTGATGGCTTTAAACTTGTTAGTTCCATTGAATCGAAGAGCTTGGTAAC
TTCCACCAAGAACTTCTTTTTGGTAACTGTTCGCGTGCATTCTTCTAATGTAGATCTGTGGTTAATAATACAAACAACGTTGTATGAAGAGAGAAGAAATAACTGTACTA
TCCCGAGTTTATGACTTCATTCCTCTATTGACTGTCAGTAAAATGGGGGATCAAACTCAATCTGATAATCACTAGCTAGTAATGGCAGCAGGTGCAGGTGCAGGTGAATC
TGATCAATTCAATTATCAAATCAATCTTGCAATCATATCAGCCGATTGGAACTCAGAGAGTCGCTAATAAAAATCCACATAACTCCGTGGATTCATATCTCAGCCAAACA
TACAGGGGCAGAAATACTTTTACAAAGAGAGTCAAACATCCCGGTTAACATGAGGTAGTCTTACTTTTACAACACCTTTCTTCTAACCACCTCAAACGTTTCTGGTTCCC
TTTAAGTGAAATGAATGTCTCCCTTAAATTTGGTTACTCAAAGAGATCCAAAGCAGCAAAGTACAGCTGGTTATCAGTGCTTTCAATCTCATCCAGGCACCTATGCAATT
AGTTGTACTGAATCTGTATTCAGAAGGCATTATTTCAGCTGTTCTCACTTCGGAAGATTCTAGCATGCCTCCCAACATACCTCAACACCAGTATCATATGAGTAGCACAC
GCTGAAGATACCAAAATTAATCAATCCCCGGAGTATTTATGGACTTCCGAGCTATCTTTGATCCAGATTCTCAAAGCAGAGGACTAGAGAATATTTAGCTAAATGAAATA
CCAAAGTTAATCTAGATCATTGTTAGACTAAAATGTCGAATAGTTAGCTTCTATTTTCATATTGTGCATAATTGTAACAACCTAACCCCATTGCTAATAGATATTATCCG
TTTTAGCTCATTATATATCGTTATCAAACTCTAGTTTTAAGACTTTCATTACAAGGAATGCTTCGTTCCCCTCTCCAACTTCTTCAACCGACGTGGGGTCTTCCACATTT
TTATAAGAAATGTCTGTTTCCCTCTT

Protein sequence

Show/hide protein sequence

MTVAPSLSRLHSPFLYCPLKPTSSASLSLTFSRNQRSPASYPRIRAIDLDQNTVVALSVGLASLAVGIGIPVFYETQIDNAAKRENTQPCFPCTGSGARKLIHCFKSPSF
HEMILGKRCRFCMGTGNVTVELGGDEKEVSRCINCDGVGTLTCTTCQGSGIQPRYLDRREFKDDD

Carg08685 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome