CuGenDBv2

Gene ID	Carg08688
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Nucleic acid-binding, OB-fold containing protein
Genome location	Carg_Chr09:515076..517074
RNA-Seq Expression	Carg08688
Synteny	Carg08688
Gene Ontology terms	GO:0006352 - DNA-templated transcription, initiation (biological process) GO:0005736 - RNA polymerase I complex (cellular component) GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
InterPro domains	IPR036898 - RNA polymerase Rpb7-like, N-terminal domain superfamily IPR045113 - RNA polymerase Rpb7-like

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6591280.1 hypothetical protein SDJN03_13626, partial [Cucurbita argyrosperma subsp. sororia]

9.5e-110

99.53

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Query:  MEGLKVSDADLVIYLHPAKSNKVSQAILRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKILSGVHPYFAVTIKAKLLLFSPKPNMLLEGKVVKLKQESIH
        MEGLKVSDADLVIYLHPAKSNKVSQAILRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKILSGVHPYFAVTIKAKLLLFSPKPNMLLEGKVVKLKQESIH
Subjt:  MEGLKVSDADLVIYLHPAKSNKVSQAILRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKILSGVHPYFAVTIKAKLLLFSPKPNMLLEGKVVKLKQESIH

Query:  VIVLGFASAVITDEDIRSEFKHITRHGEEMLVSRANKHHVIKVGTMIRFLVKSFDEGILHISGSLVPSHTGSIHRLEKNSVEGLATNKSKRKMREDEATD
        VIVLGFASAVITDEDIRSEFKHITRHGEEMLVSRANKHHVIKVGTMIRFLVKSFDEGILHISGSLVPSHTGSIHRLEKNSVEGLATNKSKRKMREDEATD
Subjt:  VIVLGFASAVITDEDIRSEFKHITRHGEEMLVSRANKHHVIKVGTMIRFLVKSFDEGILHISGSLVPSHTGSIHRLEKNSVEGLATNKSKRKMREDEATD

Query:  INALILNDDHQSKT
        INALILNDDHQS T
Subjt:  INALILNDDHQSKT

KAG7024164.1 rpa43, partial [Cucurbita argyrosperma subsp. argyrosperma]

5.8e-115

100

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Query:  MEGLKVSDADLVIYLHPAKSNKVSQAILRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKILSGVHPYFAVTIKAKLLLFSPKPNMLLEGKVVKLKQESIH
        MEGLKVSDADLVIYLHPAKSNKVSQAILRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKILSGVHPYFAVTIKAKLLLFSPKPNMLLEGKVVKLKQESIH
Subjt:  MEGLKVSDADLVIYLHPAKSNKVSQAILRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKILSGVHPYFAVTIKAKLLLFSPKPNMLLEGKVVKLKQESIH

Query:  VIVLGFASAVITDEDIRSEFKHITRHGEEMLVSRANKHHVIKVGTMIRFLVKSFDEGILHISGSLVPSHTGSIHRLEKNSVEGLATNKSKRKMREDEATD
        VIVLGFASAVITDEDIRSEFKHITRHGEEMLVSRANKHHVIKVGTMIRFLVKSFDEGILHISGSLVPSHTGSIHRLEKNSVEGLATNKSKRKMREDEATD
Subjt:  VIVLGFASAVITDEDIRSEFKHITRHGEEMLVSRANKHHVIKVGTMIRFLVKSFDEGILHISGSLVPSHTGSIHRLEKNSVEGLATNKSKRKMREDEATD

Query:  INALILNDDHQSKTKRQKTTRLS
        INALILNDDHQSKTKRQKTTRLS
Subjt:  INALILNDDHQSKTKRQKTTRLS

XP_022936799.1 uncharacterized protein LOC111443277 [Cucurbita moschata]

1.3e-114

99.55

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Query:  MEGLKVSDADLVIYLHPAKSNKVSQAILRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKILSGVHPYFAVTIKAKLLLFSPKPNMLLEGKVVKLKQESIH
        MEGLKVSDADLVIYLHPAKSNKVSQAILRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKILSGVHPYFAVTIKAKLLLFSPKPNMLLEGKVVKLKQESIH
Subjt:  MEGLKVSDADLVIYLHPAKSNKVSQAILRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKILSGVHPYFAVTIKAKLLLFSPKPNMLLEGKVVKLKQESIH

Query:  VIVLGFASAVITDEDIRSEFKHITRHGEEMLVSRANKHHVIKVGTMIRFLVKSFDEGILHISGSLVPSHTGSIHRLEKNSVEGLATNKSKRKMREDEATD
        VIVLGFASAVITDEDIRSEFKHITRHGEEMLVSRANKHHVIKVGTMIRFLVKSFDEGILHISGSLVPSHTGSIHRLEKNSVEGLATNKSKRKMREDEATD
Subjt:  VIVLGFASAVITDEDIRSEFKHITRHGEEMLVSRANKHHVIKVGTMIRFLVKSFDEGILHISGSLVPSHTGSIHRLEKNSVEGLATNKSKRKMREDEATD

Query:  INALILNDDHQSKTKRQKTTRLS
        INALILNDDHQSKTKRQ+TTRLS
Subjt:  INALILNDDHQSKTKRQKTTRLS

XP_022974791.1 uncharacterized protein LOC111473544 [Cucurbita maxima]

3.5e-112

97.76

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Query:  MEGLKVSDADLVIYLHPAKSNKVSQAILRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKILSGVHPYFAVTIKAKLLLFSPKPNMLLEGKVVKLKQESIH
        MEGLKVSDADLVIYLHPAKSNKVSQAIL ELGAMLLKFDEKFEGVLLAYEAKIIDKSAKILSGVHPYFAVTIKAKLLLFSPKPNMLLEGKVVKLKQESIH
Subjt:  MEGLKVSDADLVIYLHPAKSNKVSQAILRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKILSGVHPYFAVTIKAKLLLFSPKPNMLLEGKVVKLKQESIH

Query:  VIVLGFASAVITDEDIRSEFKHITRHGEEMLVSRANKHHVIKVGTMIRFLVKSFDEGILHISGSLVPSHTGSIHRLEKNSVEGLATNKSKRKMREDEATD
        VIVLGFASAVITDEDI SEFKHITRHGEEMLVSRANKHHVIKVGT+IRFLVKSFDEGILHISGSLVPSHTGSIHRLEKNSVEGLATNKSKRKMREDEATD
Subjt:  VIVLGFASAVITDEDIRSEFKHITRHGEEMLVSRANKHHVIKVGTMIRFLVKSFDEGILHISGSLVPSHTGSIHRLEKNSVEGLATNKSKRKMREDEATD

Query:  INALILNDDHQSKTKRQKTTRLS
        INALILNDDHQSKTK+QK TRLS
Subjt:  INALILNDDHQSKTKRQKTTRLS

XP_023535184.1 uncharacterized protein LOC111796686 [Cucurbita pepo subsp. pepo]

4.9e-114

99.1

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Query:  MEGLKVSDADLVIYLHPAKSNKVSQAILRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKILSGVHPYFAVTIKAKLLLFSPKPNMLLEGKVVKLKQESIH
        MEGLKVSDADLVIYLHPAKSNKVSQAILRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKILSGVHPYFAVTIKAKLLLFSPKPNMLLEGKVVKLKQESIH
Subjt:  MEGLKVSDADLVIYLHPAKSNKVSQAILRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKILSGVHPYFAVTIKAKLLLFSPKPNMLLEGKVVKLKQESIH

Query:  VIVLGFASAVITDEDIRSEFKHITRHGEEMLVSRANKHHVIKVGTMIRFLVKSFDEGILHISGSLVPSHTGSIHRLEKNSVEGLATNKSKRKMREDEATD
        VIVLGFASAVITDEDIRSEFKHITRHGEEMLVSRANKHHVIKVGTMIRFLVKSFDEGILHISGSLVPSHTGSIHRLEKNSVEGLATNKSKRKMREDEATD
Subjt:  VIVLGFASAVITDEDIRSEFKHITRHGEEMLVSRANKHHVIKVGTMIRFLVKSFDEGILHISGSLVPSHTGSIHRLEKNSVEGLATNKSKRKMREDEATD

Query:  INALILNDDHQSKTKRQKTTRLS
        INALILNDDHQSKTK+QKT RLS
Subjt:  INALILNDDHQSKTKRQKTTRLS

TrEMBL top hits

e value

%identity

Alignment

A0A6J1F9B5 uncharacterized protein LOC111443277

6.2e-115

99.55

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Query:  MEGLKVSDADLVIYLHPAKSNKVSQAILRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKILSGVHPYFAVTIKAKLLLFSPKPNMLLEGKVVKLKQESIH
        MEGLKVSDADLVIYLHPAKSNKVSQAILRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKILSGVHPYFAVTIKAKLLLFSPKPNMLLEGKVVKLKQESIH
Subjt:  MEGLKVSDADLVIYLHPAKSNKVSQAILRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKILSGVHPYFAVTIKAKLLLFSPKPNMLLEGKVVKLKQESIH

Query:  VIVLGFASAVITDEDIRSEFKHITRHGEEMLVSRANKHHVIKVGTMIRFLVKSFDEGILHISGSLVPSHTGSIHRLEKNSVEGLATNKSKRKMREDEATD
        VIVLGFASAVITDEDIRSEFKHITRHGEEMLVSRANKHHVIKVGTMIRFLVKSFDEGILHISGSLVPSHTGSIHRLEKNSVEGLATNKSKRKMREDEATD
Subjt:  VIVLGFASAVITDEDIRSEFKHITRHGEEMLVSRANKHHVIKVGTMIRFLVKSFDEGILHISGSLVPSHTGSIHRLEKNSVEGLATNKSKRKMREDEATD

Query:  INALILNDDHQSKTKRQKTTRLS
        INALILNDDHQSKTKRQ+TTRLS
Subjt:  INALILNDDHQSKTKRQKTTRLS

A0A6J1FN75 uncharacterized protein LOC111445794 isoform X1

1.8e-98

82.33

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Query:  MEGLKVSDADLVIYLHPAKSNKVSQAILRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKILSGVHPYFAVTIKAKLLLFSPKPNMLLEGKVVKLKQESIH
        MEGLKVSDA+LVIY+HP+KS KVSQA+LRELGAMLLKFDE+FEGVLLAYEA IIDKSAKILSGVHPYF VTIKAKLLLFSPKPNMLLEGKVVKL+QESIH
Subjt:  MEGLKVSDADLVIYLHPAKSNKVSQAILRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKILSGVHPYFAVTIKAKLLLFSPKPNMLLEGKVVKLKQESIH

Query:  VIVLGFASAVITDEDIRSEFKHITRHGEEMLVSRANKHHVIKVGTMIRFLVKSFDEGILHISGSLVPSHTGSIHRLEKNSVEGLATNKSKRKMREDE---
        VIVLGFASAVITDEDIR+EFKH T+HGEEM VSRANKHHVIKVGTM+RFLVKSFDE ILHISGSLVPSHTGSIH LEKNSVEG  T++S++K R+++   
Subjt:  VIVLGFASAVITDEDIRSEFKHITRHGEEMLVSRANKHHVIKVGTMIRFLVKSFDEGILHISGSLVPSHTGSIHRLEKNSVEGLATNKSKRKMREDE---

Query:  ------ATDINALILNDDHQSKTKRQKTTRLS
              ATD+NAL+LN+DHQSKTK+QKT+R+S
Subjt:  ------ATDINALILNDDHQSKTKRQKTTRLS

A0A6J1FPG3 uncharacterized protein LOC111445794 isoform X2

5.8e-97

82.33

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Query:  MEGLKVSDADLVIYLHPAKSNKVSQAILRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKILSGVHPYFAVTIKAKLLLFSPKPNMLLEGKVVKLKQESIH
        MEGLKVSDA+LVIY+HP+KS KVSQA+LRELGAMLLKFDE+FEGVLLAYEA IIDKSAKILSGVHPYF VTIKAKLLLFSPKPNMLLEGKVVKL+QESIH
Subjt:  MEGLKVSDADLVIYLHPAKSNKVSQAILRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKILSGVHPYFAVTIKAKLLLFSPKPNMLLEGKVVKLKQESIH

Query:  VIVLGFASAVITDEDIRSEFKHITRHGEEMLVSRANKHHVIKVGTMIRFLVKSFDEGILHISGSLVPSHTGSIHRLEKNSVEGLATNKSKRKMREDE---
        VIVLGFASAVITDEDIR+EFKH T+HGEEM VSRANKHHVIKVGTM+RFLVKSFDE ILHISGSLVPSHTGSIH LEKNSVEG  T +S++K R+++   
Subjt:  VIVLGFASAVITDEDIRSEFKHITRHGEEMLVSRANKHHVIKVGTMIRFLVKSFDEGILHISGSLVPSHTGSIHRLEKNSVEGLATNKSKRKMREDE---

Query:  ------ATDINALILNDDHQSKTKRQKTTRLS
              ATD+NAL+LN+DHQSKTK+QKT+R+S
Subjt:  ------ATDINALILNDDHQSKTKRQKTTRLS

A0A6J1ICE8 uncharacterized protein LOC111473544

1.7e-112

97.76

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Query:  MEGLKVSDADLVIYLHPAKSNKVSQAILRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKILSGVHPYFAVTIKAKLLLFSPKPNMLLEGKVVKLKQESIH
        MEGLKVSDADLVIYLHPAKSNKVSQAIL ELGAMLLKFDEKFEGVLLAYEAKIIDKSAKILSGVHPYFAVTIKAKLLLFSPKPNMLLEGKVVKLKQESIH
Subjt:  MEGLKVSDADLVIYLHPAKSNKVSQAILRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKILSGVHPYFAVTIKAKLLLFSPKPNMLLEGKVVKLKQESIH

Query:  VIVLGFASAVITDEDIRSEFKHITRHGEEMLVSRANKHHVIKVGTMIRFLVKSFDEGILHISGSLVPSHTGSIHRLEKNSVEGLATNKSKRKMREDEATD
        VIVLGFASAVITDEDI SEFKHITRHGEEMLVSRANKHHVIKVGT+IRFLVKSFDEGILHISGSLVPSHTGSIHRLEKNSVEGLATNKSKRKMREDEATD
Subjt:  VIVLGFASAVITDEDIRSEFKHITRHGEEMLVSRANKHHVIKVGTMIRFLVKSFDEGILHISGSLVPSHTGSIHRLEKNSVEGLATNKSKRKMREDEATD

Query:  INALILNDDHQSKTKRQKTTRLS
        INALILNDDHQSKTK+QK TRLS
Subjt:  INALILNDDHQSKTKRQKTTRLS

A0A6J1IWP0 uncharacterized protein LOC111481277 isoform X1

5.8e-97

82.82

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Query:  MEGLKVSDADLVIYLHPAKSNKVSQAILRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKILSGVHPYFAVTIKAKLLLFSPKPNMLLEGKVVKLKQESIH
        MEGLKVSDA+LVIY+HP+KS KVSQA+LR+LGAMLLKFDE+FEGVLLAYEA IIDKSAKILSGVHPYF VTIKAKLLLFSPKPNMLLEGKVVKL+QESIH
Subjt:  MEGLKVSDADLVIYLHPAKSNKVSQAILRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKILSGVHPYFAVTIKAKLLLFSPKPNMLLEGKVVKLKQESIH

Query:  VIVLGFASAVITDEDIRSEFKHITRHGEEMLVSRANKHHVIKVGTMIRFLVKSFDEGILHISGSLVPSHTGSIHRLEKNSVEGLATNKSKRKMREDE---
        VIVLGFASAVITDEDIR+EFKH T+HGEEM VSRA+KHHVIKVGTM+RFLVKSFDE ILHISGSLVPSHTGSIH LEKNSVEG  TN+S++KMR+++   
Subjt:  VIVLGFASAVITDEDIRSEFKHITRHGEEMLVSRANKHHVIKVGTMIRFLVKSFDEGILHISGSLVPSHTGSIHRLEKNSVEGLATNKSKRKMREDE---

Query:  ------ATDINALILNDDHQSKTKRQK
              ATD+NAL+LN+DHQSKTK+QK
Subjt:  ------ATDINALILNDDHQSKTKRQK

SwissProt top hits

e value

%identity

Alignment

O43036 DNA-directed RNA polymerase I subunit rpa43

8.3e-08

26.38

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Query:  DLVIYLHPAKSNKVSQAILRELGAMLLKFDEKFEGVLLAYE-AKIIDKSAKILSGVHPYFAVTIKAKLLLFSPKPNMLLEGKVVKLKQESIHVIVLGFAS
        DL + + P  S     AI   + +M+L    +  G++LAY+  + ++KSAK++    P+  + ++  +L+FSPK    LEGK+  +    I +++LG  +
Subjt:  DLVIYLHPAKSNKVSQAILRELGAMLLKFDEKFEGVLLAYE-AKIIDKSAKILSGVHPYFAVTIKAKLLLFSPKPNMLLEGKVVKLKQESIHVIVLGFAS

Query:  AVITDEDIRSEFKHITRH-GEEMLVSRANKHHVIKVGTMIRFLVKSF--DEGILHISGSLVPS
        A I  + I  ++  I     EE    + N  ++++ G  + F+V     + G+  + G+L  S
Subjt:  AVITDEDIRSEFKHITRH-GEEMLVSRANKHHVIKVGTMIRFLVKSF--DEGILHISGSLVPS

Arabidopsis top hits

e value

%identity

Alignment

AT1G75670.1 DNA-directed RNA polymerases

2.0e-57

54.12

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Query:  MEGLKVSDADLVIYLHPAKSNKVSQAILRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKILSGVHPYFAVTIKAKLLLFSPKPNMLLEGKVVKLKQESIH
        MEGLK+S+A+L+I++HP++S  V Q I REL ++L +++E F+GVLLAY+A +  K AKIL+G+HPYF V +  +LLLF PKP   +EGK+VK+  ESIH
Subjt:  MEGLKVSDADLVIYLHPAKSNKVSQAILRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKILSGVHPYFAVTIKAKLLLFSPKPNMLLEGKVVKLKQESIH

Query:  VIVLGFASAVITDEDIRSEFKHITRHGEEMLVSRANKHHVIKVGTMIRFLVKSFDEGILHISGSLVPSHTGSIHRLEKNSVEGLATNKSKRKMR
        VIVLGF++AVITD DIR EFK+  R GE   VSR++K H +K+GTM+R  V+SFDE ++HI+GSL+P +TG +  LEK S E L T++  ++ +
Subjt:  VIVLGFASAVITDEDIRSEFKHITRHGEEMLVSRANKHHVIKVGTMIRFLVKSFDEGILHISGSLVPSHTGSIHRLEKNSVEGLATNKSKRKMR

AT1G75670.2 DNA-directed RNA polymerases

2.0e-57

54.12

Show/hide

Query:  MEGLKVSDADLVIYLHPAKSNKVSQAILRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKILSGVHPYFAVTIKAKLLLFSPKPNMLLEGKVVKLKQESIH
        MEGLK+S+A+L+I++HP++S  V Q I REL ++L +++E F+GVLLAY+A +  K AKIL+G+HPYF V +  +LLLF PKP   +EGK+VK+  ESIH
Subjt:  MEGLKVSDADLVIYLHPAKSNKVSQAILRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKILSGVHPYFAVTIKAKLLLFSPKPNMLLEGKVVKLKQESIH

Query:  VIVLGFASAVITDEDIRSEFKHITRHGEEMLVSRANKHHVIKVGTMIRFLVKSFDEGILHISGSLVPSHTGSIHRLEKNSVEGLATNKSKRKMR
        VIVLGF++AVITD DIR EFK+  R GE   VSR++K H +K+GTM+R  V+SFDE ++HI+GSL+P +TG +  LEK S E L T++  ++ +
Subjt:  VIVLGFASAVITDEDIRSEFKHITRHGEEMLVSRANKHHVIKVGTMIRFLVKSFDEGILHISGSLVPSHTGSIHRLEKNSVEGLATNKSKRKMR

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGAAGGGCTCAAGGTGTCGGATGCCGATTTGGTTATATATCTTCACCCAGCCAAAAGTAACAAGGTTTCGCAAGCGATTCTTCGCGAGCTCGGCGCTATGCTTCTAAA
ATTTGATGAAAAATTTGAGGGCGTGCTACTGGCTTATGAGGCCAAAATTATTGATAAAAGTGCGAAGATTCTATCTGGAGTGCACCCTTACTTTGCCGTGACAATAAAGG
CAAAGCTATTACTTTTCTCTCCAAAACCAAACATGCTTTTAGAGGGAAAGGTGGTAAAGCTTAAGCAAGAATCAATCCATGTTATTGTCTTGGGTTTTGCTTCTGCTGTA
ATAACCGATGAAGACATTCGCAGCGAATTCAAGCATATAACAAGACATGGAGAAGAAATGCTTGTCAGTAGAGCTAACAAGCACCATGTAATAAAGGTTGGGACAATGAT
ACGGTTTTTGGTGAAGAGTTTTGATGAGGGAATACTTCACATCTCTGGATCTCTTGTTCCATCTCACACAGGGAGCATTCATCGGTTGGAGAAGAACTCAGTTGAAGGCT
TAGCAACTAATAAGAGCAAAAGGAAGATGAGAGAAGACGAGGCCACGGATATAAATGCACTTATCTTGAACGATGACCATCAGTCAAAAACGAAAAGGCAAAAAACTACC
AGATTATCTTGA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MEGLKVSDADLVIYLHPAKSNKVSQAILRELGAMLLKFDEKFEGVLLAYEAKIIDKSAKILSGVHPYFAVTIKAKLLLFSPKPNMLLEGKVVKLKQESIHVIVLGFASAV
ITDEDIRSEFKHITRHGEEMLVSRANKHHVIKVGTMIRFLVKSFDEGILHISGSLVPSHTGSIHRLEKNSVEGLATNKSKRKMREDEATDINALILNDDHQSKTKRQKTT
RLS

Carg08688 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome