CuGenDBv2

Gene ID	Carg08691
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Mitochondrial
Genome location	Carg_Chr09:527455..529851
RNA-Seq Expression	Carg08691
Synteny	Carg08691
Gene Ontology terms	GO:0005762 - mitochondrial large ribosomal subunit (cellular component) GO:0004386 - helicase activity (molecular function)
InterPro domains	IPR019716 - Ribosomal protein L53, mitochondrial

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7024167.1 hypothetical protein SDJN02_12980, partial [Cucurbita argyrosperma subsp. argyrosperma]

7.5e-97

100

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Query:  MLKFLSKVRIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPSQTIRNMILEKGQLLETEQMFREAGE
        MLKFLSKVRIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPSQTIRNMILEKGQLLETEQMFREAGE
Subjt:  MLKFLSKVRIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPSQTIRNMILEKGQLLETEQMFREAGE

Query:  TWPVIIPDEELNQPAPSIKVRLLLLPLFLEKQKTSSNFITVDQITERPERGKECLLSSQPWAAKNRIIIRGVEGLILRCFSF
        TWPVIIPDEELNQPAPSIKVRLLLLPLFLEKQKTSSNFITVDQITERPERGKECLLSSQPWAAKNRIIIRGVEGLILRCFSF
Subjt:  TWPVIIPDEELNQPAPSIKVRLLLLPLFLEKQKTSSNFITVDQITERPERGKECLLSSQPWAAKNRIIIRGVEGLILRCFSF

XP_022974805.1 uncharacterized protein LOC111473560 isoform X1 [Cucurbita maxima]

3.1e-58

95.87

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Query:  MLKFLSKVRIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPSQTIRNMILEKGQLLETEQMFREAGE
        MLKFLSKV+IEFNALDPRL SCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQI VTFVNGVEEVFDATSTP+QTIRNMILEKGQLLETEQMFREAGE
Subjt:  MLKFLSKVRIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPSQTIRNMILEKGQLLETEQMFREAGE

Query:  TWPVIIPDEELNQPAPSIKVR
        TWPVIIPDEELNQPAPSIK R
Subjt:  TWPVIIPDEELNQPAPSIKVR

XP_022974807.1 uncharacterized protein LOC111473560 isoform X2 [Cucurbita maxima]

6.9e-58

96.64

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Query:  MLKFLSKVRIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPSQTIRNMILEKGQLLETEQMFREAGE
        MLKFLSKV+IEFNALDPRL SCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQI VTFVNGVEEVFDATSTP+QTIRNMILEKGQLLETEQMFREAGE
Subjt:  MLKFLSKVRIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPSQTIRNMILEKGQLLETEQMFREAGE

Query:  TWPVIIPDEELNQPAPSIK
        TWPVIIPDEELNQPAPSIK
Subjt:  TWPVIIPDEELNQPAPSIK

XP_022974808.1 uncharacterized protein LOC111473560 isoform X3 [Cucurbita maxima]

4.8e-59

95.9

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Query:  MLKFLSKVRIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPSQTIRNMILEKGQLLETEQMFREAGE
        MLKFLSKV+IEFNALDPRL SCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQI VTFVNGVEEVFDATSTP+QTIRNMILEKGQLLETEQMFREAGE
Subjt:  MLKFLSKVRIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPSQTIRNMILEKGQLLETEQMFREAGE

Query:  TWPVIIPDEELNQPAPSIKVRL
        TWPVIIPDEELNQPAPSIK+RL
Subjt:  TWPVIIPDEELNQPAPSIKVRL

XP_023536065.1 uncharacterized protein LOC111797318 [Cucurbita pepo subsp. pepo]

4.0e-58

96.64

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Query:  MLKFLSKVRIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPSQTIRNMILEKGQLLETEQMFREAGE
        MLKFLSKV++EFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTP+QTIRN ILEKGQLLETEQMFREAGE
Subjt:  MLKFLSKVRIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPSQTIRNMILEKGQLLETEQMFREAGE

Query:  TWPVIIPDEELNQPAPSIK
        TWPVIIPDEELNQPAPSIK
Subjt:  TWPVIIPDEELNQPAPSIK

TrEMBL top hits

e value

%identity

Alignment

A0A6J1FNY6 uncharacterized protein LOC111445972

1.3e-57

95.04

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Query:  MLKFLSKVRIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPSQTIRNMILEKGQLLETEQMFREAGE
        MLKFLSKVRIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQI VTFVNGVEEVFDATSTP+QTIR MILEKGQLLETEQMFREAGE
Subjt:  MLKFLSKVRIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPSQTIRNMILEKGQLLETEQMFREAGE

Query:  TWPVIIPDEELNQPAPSIKVR
        TWPVIIPDEELN P PSIK R
Subjt:  TWPVIIPDEELNQPAPSIKVR

A0A6J1IB98 uncharacterized protein LOC111473560 isoform X2

3.3e-58

96.64

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Query:  MLKFLSKVRIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPSQTIRNMILEKGQLLETEQMFREAGE
        MLKFLSKV+IEFNALDPRL SCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQI VTFVNGVEEVFDATSTP+QTIRNMILEKGQLLETEQMFREAGE
Subjt:  MLKFLSKVRIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPSQTIRNMILEKGQLLETEQMFREAGE

Query:  TWPVIIPDEELNQPAPSIK
        TWPVIIPDEELNQPAPSIK
Subjt:  TWPVIIPDEELNQPAPSIK

A0A6J1IEW0 uncharacterized protein LOC111473560 isoform X1

1.5e-58

95.87

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Query:  MLKFLSKVRIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPSQTIRNMILEKGQLLETEQMFREAGE
        MLKFLSKV+IEFNALDPRL SCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQI VTFVNGVEEVFDATSTP+QTIRNMILEKGQLLETEQMFREAGE
Subjt:  MLKFLSKVRIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPSQTIRNMILEKGQLLETEQMFREAGE

Query:  TWPVIIPDEELNQPAPSIKVR
        TWPVIIPDEELNQPAPSIK R
Subjt:  TWPVIIPDEELNQPAPSIKVR

A0A6J1IHE6 uncharacterized protein LOC111473560 isoform X3

2.3e-59

95.9

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Query:  MLKFLSKVRIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPSQTIRNMILEKGQLLETEQMFREAGE
        MLKFLSKV+IEFNALDPRL SCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQI VTFVNGVEEVFDATSTP+QTIRNMILEKGQLLETEQMFREAGE
Subjt:  MLKFLSKVRIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPSQTIRNMILEKGQLLETEQMFREAGE

Query:  TWPVIIPDEELNQPAPSIKVRL
        TWPVIIPDEELNQPAPSIK+RL
Subjt:  TWPVIIPDEELNQPAPSIKVRL

A0A6J1IZE5 uncharacterized protein LOC111481279

4.8e-57

94.21

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Query:  MLKFLSKVRIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPSQTIRNMILEKGQLLETEQMFREAGE
        MLKFLSKV+IEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTP+QTIR  ILEKGQLLETEQMFREAGE
Subjt:  MLKFLSKVRIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPSQTIRNMILEKGQLLETEQMFREAGE

Query:  TWPVIIPDEELNQPAPSIKVR
        TWPVIIPDEELN P PSIK R
Subjt:  TWPVIIPDEELNQPAPSIKVR

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G39600.1 CONTAINS InterPro DOMAIN/s: Ribosomal protein L53, mitochondrial (InterPro:IPR019716); Has 50 Blast hits to 50 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).

6.0e-52

80.99

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Query:  MLKFLSKVRIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPSQTIRNMILEKGQLLETEQMFREAGE
        MLKFLSKVRIEFN LDPRLASC+EFLAQCNARKAKESNP CQ++VKRRTD+ PPQI VTFVNGVEE FDA +T +Q+IR MIL+KGQ LETEQMFREAGE
Subjt:  MLKFLSKVRIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPSQTIRNMILEKGQLLETEQMFREAGE

Query:  TWPVIIPDEELNQPAPSIKVR
         WPVIIPDEEL Q AP +K R
Subjt:  TWPVIIPDEELNQPAPSIKVR

Sequences

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CDS sequence

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ATGTTAAAGTTCCTGTCTAAAGTAAGGATCGAATTCAATGCCTTAGATCCACGCTTAGCATCTTGCATGGAGTTCTTAGCGCAGTGTAATGCTCGCAAGGCCAAGGAGTC
GAACCCCGCTTGCCAATTGATCGTCAAGCGCCGAACCGACGACCACCCGCCCCAGATCGCCGTCACCTTTGTCAACGGAGTCGAAGAGGTTTTTGACGCTACATCTACTC
CTTCTCAAACAATCAGGAATATGATTCTTGAAAAGGGCCAACTCCTTGAGACCGAGCAAATGTTCCGAGAAGCTGGGGAAACTTGGCCAGTTATCATTCCCGATGAAGAG
CTCAATCAACCCGCTCCCAGTATCAAGGTTCGTCTTCTTCTTCTCCCTTTATTCCTAGAAAAGCAGAAGACAAGCAGTAACTTTATCACAGTTGATCAAATTACAGAAAG
ACCTGAAAGAGGAAAGGAGTGCCTACTGTCTTCACAACCTTGGGCTGCAAAGAATAGAATCATTATCCGTGGAGTTGAAGGGCTGATTCTGAGATGTTTTTCGTTTTAA

mRNA sequence

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Protein sequence

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MLKFLSKVRIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPSQTIRNMILEKGQLLETEQMFREAGETWPVIIPDEE
LNQPAPSIKVRLLLLPLFLEKQKTSSNFITVDQITERPERGKECLLSSQPWAAKNRIIIRGVEGLILRCFSF

Carg08691 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome