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Carg08719 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg08719
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionprotein RADIALIS-like 3
Genome locationCarg_Chr09:656473..657044
RNA-Seq ExpressionCarg08719
SyntenyCarg08719
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR009057 - Homeobox-like domain superfamily
IPR044636 - Transcription factor RADIALIS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN60114.2 hypothetical protein Csa_000871 [Cucumis sativus]3.2e-3890.43Show/hide
Query:  MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKNVGCNGRGYADQK
        MASSSVTS   GFYSSWTKKENKKFEEALA++D+DTPDRFEKVARAVGGGKTAEEARRLYELLVRDV+KIEAGQVQIPLYKN GCNGRGYADQ+
Subjt:  MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKNVGCNGRGYADQK

XP_008466554.1 PREDICTED: protein RADIALIS-like 4 [Cucumis melo]3.2e-3890.43Show/hide
Query:  MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKNVGCNGRGYADQK
        MASSSVTS   GFYSSWTKKENKKFEEALA++D+DTPDRFEKVARAVGGGKTAEEARRLYELLVRDV+KIEAGQVQIPLYKN GCNGRGYADQ+
Subjt:  MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKNVGCNGRGYADQK

XP_022155868.1 protein RADIALIS-like 4 [Momordica charantia]9.6e-3593.18Show/hide
Query:  MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKNVGCNGR
        MASSSVTS ARGFYSSWTK+ENKKFEEALA+YDQDTPDRFEKVARAVGGGKTAEEARRLYELL RDVKKIEAGQVQIPLYKN G NGR
Subjt:  MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKNVGCNGR

XP_022936283.1 protein RADIALIS-like 3 [Cucurbita moschata]6.0e-61100Show/hide
Query:  MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKNVGCNGRGYADQKSKMFTK
        MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKNVGCNGRGYADQKSKMFTK
Subjt:  MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKNVGCNGRGYADQKSKMFTK

Query:  SVKLRSLFMREKIQDRLRRNVFADD
        SVKLRSLFMREKIQDRLRRNVFADD
Subjt:  SVKLRSLFMREKIQDRLRRNVFADD

XP_022940511.1 protein RADIALIS-like 3 [Cucurbita moschata]5.8e-3288.51Show/hide
Query:  MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKNVGCNG
        MASSS T+ A GFYSSWTK+ENKKFEEALA+YDQDTPDRFE VARAVGGGKTAEE RRLYELLVRDV KIEAGQVQIPLYKNVG NG
Subjt:  MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKNVGCNG

TrEMBL top hitse value%identityAlignment
A0A0A0LGL4 Uncharacterized protein1.5e-3890.43Show/hide
Query:  MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKNVGCNGRGYADQK
        MASSSVTS   GFYSSWTKKENKKFEEALA++D+DTPDRFEKVARAVGGGKTAEEARRLYELLVRDV+KIEAGQVQIPLYKN GCNGRGYADQ+
Subjt:  MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKNVGCNGRGYADQK

A0A1S3CRN8 protein RADIALIS-like 41.5e-3890.43Show/hide
Query:  MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKNVGCNGRGYADQK
        MASSSVTS   GFYSSWTKKENKKFEEALA++D+DTPDRFEKVARAVGGGKTAEEARRLYELLVRDV+KIEAGQVQIPLYKN GCNGRGYADQ+
Subjt:  MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKNVGCNGRGYADQK

A0A5A7TE80 Protein RADIALIS-like 31.5e-3890.43Show/hide
Query:  MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKNVGCNGRGYADQK
        MASSSVTS   GFYSSWTKKENKKFEEALA++D+DTPDRFEKVARAVGGGKTAEEARRLYELLVRDV+KIEAGQVQIPLYKN GCNGRGYADQ+
Subjt:  MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKNVGCNGRGYADQK

A0A6J1DP29 protein RADIALIS-like 44.7e-3593.18Show/hide
Query:  MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKNVGCNGR
        MASSSVTS ARGFYSSWTK+ENKKFEEALA+YDQDTPDRFEKVARAVGGGKTAEEARRLYELL RDVKKIEAGQVQIPLYKN G NGR
Subjt:  MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKNVGCNGR

A0A6J1FCU5 protein RADIALIS-like 32.9e-61100Show/hide
Query:  MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKNVGCNGRGYADQKSKMFTK
        MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKNVGCNGRGYADQKSKMFTK
Subjt:  MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKNVGCNGRGYADQKSKMFTK

Query:  SVKLRSLFMREKIQDRLRRNVFADD
        SVKLRSLFMREKIQDRLRRNVFADD
Subjt:  SVKLRSLFMREKIQDRLRRNVFADD

SwissProt top hitse value%identityAlignment
F4JVB8 Protein RADIALIS-like 11.4e-1753.12Show/hide
Query:  MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKNVGCNGRGYADQKSK
        MASSS++S + G   SWT K+NK FE+ALA YDQDTP+R++ VA+ V GGKT EE +R YELLV+D+  IE G V  P Y+  G    G   Q+ K
Subjt:  MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKNVGCNGRGYADQKSK

Q1G3C4 Protein RADIALIS-like 41.0e-1556.1Show/hide
Query:  MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKN
        MASSS+++      SSWT +E+K+FE ALA +D+DTPDR++K+ARAV GGK+ EE +R YELL+RDV  IE+G+   P Y+N
Subjt:  MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKN

Q6NNN0 Protein RADIALIS-like 32.2e-1861.63Show/hide
Query:  MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKNVGCN
        MAS+S++S+A     SWT+KENK FE ALA YDQDTPDR+  VARAV GGK+AEE RR YELL+RDV  IE+G+   P Y++ G N
Subjt:  MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKNVGCN

Q8GW75 Protein RADIALIS-like 53.6e-1653.19Show/hide
Query:  MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYK--NVGCNGRGYAD
        MASSS++S+     SSWT K+NK FE ALA YD+DTPDR++ VA+AV G K+AEE +R Y++LV D+  IE   V +P YK  +VG   RG  D
Subjt:  MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYK--NVGCNGRGYAD

Q9SIJ5 Protein RADIALIS-like 22.2e-1855.14Show/hide
Query:  MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYK-NVGCNGRG-YADQKSKMF
        MAS S++S   G   SWT K+NK FE ALA YDQDTPDR+  VARAV GGKT EEA+R Y+LLVRD++ IE G V  P YK   G + RG   D++ +M 
Subjt:  MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYK-NVGCNGRG-YADQKSKMF

Query:  TKSVKLR
         +S+KL+
Subjt:  TKSVKLR

Arabidopsis top hitse value%identityAlignment
AT1G19510.1 RAD-like 52.5e-1753.19Show/hide
Query:  MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYK--NVGCNGRGYAD
        MASSS++S+     SSWT K+NK FE ALA YD+DTPDR++ VA+AV G K+AEE +R Y++LV D+  IE   V +P YK  +VG   RG  D
Subjt:  MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYK--NVGCNGRGYAD

AT1G75250.1 RAD-like 62.5e-1748.42Show/hide
Query:  VTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKNVGCNGRGYADQKSKMFTK
        + S +R   S WT  +NK FE ALA YD+DTPDR+  VA+AV GGKT EE +R Y++LV D+  IE G+V +P YK    N R   D  ++  TK
Subjt:  VTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKNVGCNGRGYADQKSKMFTK

AT2G18328.1 RAD-like 47.4e-1756.1Show/hide
Query:  MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKN
        MASSS+++      SSWT +E+K+FE ALA +D+DTPDR++K+ARAV GGK+ EE +R YELL+RDV  IE+G+   P Y+N
Subjt:  MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKN

AT2G21650.1 Homeodomain-like superfamily protein1.6e-1955.14Show/hide
Query:  MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYK-NVGCNGRG-YADQKSKMF
        MAS S++S   G   SWT K+NK FE ALA YDQDTPDR+  VARAV GGKT EEA+R Y+LLVRD++ IE G V  P YK   G + RG   D++ +M 
Subjt:  MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYK-NVGCNGRG-YADQKSKMF

Query:  TKSVKLR
         +S+KL+
Subjt:  TKSVKLR

AT4G39250.1 RAD-like 11.0e-1853.12Show/hide
Query:  MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKNVGCNGRGYADQKSK
        MASSS++S + G   SWT K+NK FE+ALA YDQDTP+R++ VA+ V GGKT EE +R YELLV+D+  IE G V  P Y+  G    G   Q+ K
Subjt:  MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKNVGCNGRGYADQKSK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCATCAAGCTCTGTCACGTCGGCGGCACGTGGGTTTTACTCATCCTGGACAAAAAAAGAAAACAAGAAATTTGAGGAGGCATTAGCCTACTATGACCAGGACACACC
AGACCGTTTTGAGAAGGTAGCGAGGGCTGTTGGTGGTGGGAAAACAGCTGAGGAAGCAAGAAGACTCTATGAGCTACTCGTGCGAGATGTCAAGAAAATAGAAGCTGGTC
AAGTCCAAATACCCCTCTACAAGAACGTGGGTTGTAATGGCAGAGGGTATGCTGACCAGAAGAGTAAAATGTTCACGAAGTCGGTTAAGCTACGAAGCTTATTCATGCGT
GAGAAAATCCAAGACCGCTTGAGGAGAAATGTATTCGCCGACGACTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCATCAAGCTCTGTCACGTCGGCGGCACGTGGGTTTTACTCATCCTGGACAAAAAAAGAAAACAAGAAATTTGAGGAGGCATTAGCCTACTATGACCAGGACACACC
AGACCGTTTTGAGAAGGTAGCGAGGGCTGTTGGTGGTGGGAAAACAGCTGAGGAAGCAAGAAGACTCTATGAGCTACTCGTGCGAGATGTCAAGAAAATAGAAGCTGGTC
AAGTCCAAATACCCCTCTACAAGAACGTGGGTTGTAATGGCAGAGGGTATGCTGACCAGAAGAGTAAAATGTTCACGAAGTCGGTTAAGCTACGAAGCTTATTCATGCGT
GAGAAAATCCAAGACCGCTTGAGGAGAAATGTATTCGCCGACGACTAA
Protein sequenceShow/hide protein sequence
MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKNVGCNGRGYADQKSKMFTKSVKLRSLFMR
EKIQDRLRRNVFADD