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Carg08723 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg08723
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionprotein RADIALIS-like 3
Genome locationCarg_Chr09:672213..672627
RNA-Seq ExpressionCarg08723
SyntenyCarg08723
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0019843 - rRNA binding (molecular function)
GO:0047429 - nucleoside-triphosphate diphosphatase activity (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR017884 - SANT domain
IPR044636 - Transcription factor RADIALIS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6591315.1 Protein RADIALIS-like 1, partial [Cucurbita argyrosperma subsp. sororia]6.8e-4196.51Show/hide
Query:  MAMGSGSNWTAQQNKAFENALAIYDKNTPGRWHILAKAVGSKTAEEVKRHYDRLVEDVNRIETGQVPFPNYRKPGPAGRGFRFDEE
        MAMGSGSNWTAQQNKAFENALAIYDKNTPGRWHILAKAVGSKTAEEVKRHYDRLVEDVNRIETGQVPFPNYRKPGPAGRGFRF ++
Subjt:  MAMGSGSNWTAQQNKAFENALAIYDKNTPGRWHILAKAVGSKTAEEVKRHYDRLVEDVNRIETGQVPFPNYRKPGPAGRGFRFDEE

KAG7024198.1 Protein RADIALIS-like 1, partial [Cucurbita argyrosperma subsp. argyrosperma]2.6e-48100Show/hide
Query:  MAMGSGSNWTAQQNKAFENALAIYDKNTPGRWHILAKAVGSKTAEEVKRHYDRLVEDVNRIETGQVPFPNYRKPGPAGRGFRFDEEPTLALKYEG
        MAMGSGSNWTAQQNKAFENALAIYDKNTPGRWHILAKAVGSKTAEEVKRHYDRLVEDVNRIETGQVPFPNYRKPGPAGRGFRFDEEPTLALKYEG
Subjt:  MAMGSGSNWTAQQNKAFENALAIYDKNTPGRWHILAKAVGSKTAEEVKRHYDRLVEDVNRIETGQVPFPNYRKPGPAGRGFRFDEEPTLALKYEG

XP_008465612.1 PREDICTED: protein RADIALIS-like 3 [Cucumis melo]4.4e-3282.35Show/hide
Query:  MGSGSNWTAQQNKAFENALAIYDKNTPGRWHILAKAVGSKTAEEVKRHYDRLVEDVNRIETGQVPFPNYRKPGPAGRGFRF-DEE
        MGSGSNWTA+QNK FENALAIYDK+TP RWH LA+AVG KTAEEVKRHY+RLVEDVN+IETGQVPFPNYR+ GPA RGF F D+E
Subjt:  MGSGSNWTAQQNKAFENALAIYDKNTPGRWHILAKAVGSKTAEEVKRHYDRLVEDVNRIETGQVPFPNYRKPGPAGRGFRF-DEE

XP_022976360.1 protein RADIALIS-like 3 [Cucurbita maxima]2.6e-4095.35Show/hide
Query:  MAMGSGSNWTAQQNKAFENALAIYDKNTPGRWHILAKAVGSKTAEEVKRHYDRLVEDVNRIETGQVPFPNYRKPGPAGRGFRFDEE
        MAMGSG NWTAQQNKAFENALAIYDKNTPGRWHILAKAVGSKTAEEVKRHYDRLVEDVNRIETGQVPFPNYRKPGPAGRGFRF ++
Subjt:  MAMGSGSNWTAQQNKAFENALAIYDKNTPGRWHILAKAVGSKTAEEVKRHYDRLVEDVNRIETGQVPFPNYRKPGPAGRGFRFDEE

XP_038905673.1 protein RADIALIS-like 3 [Benincasa hispida]1.7e-3180.95Show/hide
Query:  MGSGSNWTAQQNKAFENALAIYDKNTPGRWHILAKAVGSKTAEEVKRHYDRLVEDVNRIETGQVPFPNYRKPGPAGRGFRFDEE
        MGSGS+WTA+QNK FENALAIYDK+TP RWH LA+AVG KTAEEVKRHY+RLVEDVN+IETGQVPFPNYR+ GPA RGF F +E
Subjt:  MGSGSNWTAQQNKAFENALAIYDKNTPGRWHILAKAVGSKTAEEVKRHYDRLVEDVNRIETGQVPFPNYRKPGPAGRGFRFDEE

TrEMBL top hitse value%identityAlignment
A0A0A0LGK8 SANT domain-containing protein1.5e-3080Show/hide
Query:  MGSGSNWTAQQNKAFENALAIYDKNTPGRWHILAKAVGSKTAEEVKRHYDRLVEDVNRIETGQVPFPNYRKPGPAGRGFRF-DEE
        MGSGSNWTA+QNK FENALAIYDK+TP RW  LA+AVG KTAEEVKRHY+RLVEDVN+IETGQVPFPNYR+  PA RGF F D+E
Subjt:  MGSGSNWTAQQNKAFENALAIYDKNTPGRWHILAKAVGSKTAEEVKRHYDRLVEDVNRIETGQVPFPNYRKPGPAGRGFRF-DEE

A0A1S3CPA0 protein RADIALIS-like 32.1e-3282.35Show/hide
Query:  MGSGSNWTAQQNKAFENALAIYDKNTPGRWHILAKAVGSKTAEEVKRHYDRLVEDVNRIETGQVPFPNYRKPGPAGRGFRF-DEE
        MGSGSNWTA+QNK FENALAIYDK+TP RWH LA+AVG KTAEEVKRHY+RLVEDVN+IETGQVPFPNYR+ GPA RGF F D+E
Subjt:  MGSGSNWTAQQNKAFENALAIYDKNTPGRWHILAKAVGSKTAEEVKRHYDRLVEDVNRIETGQVPFPNYRKPGPAGRGFRF-DEE

A0A5D3D7Z0 Protein RADIALIS-like 32.1e-3282.35Show/hide
Query:  MGSGSNWTAQQNKAFENALAIYDKNTPGRWHILAKAVGSKTAEEVKRHYDRLVEDVNRIETGQVPFPNYRKPGPAGRGFRF-DEE
        MGSGSNWTA+QNK FENALAIYDK+TP RWH LA+AVG KTAEEVKRHY+RLVEDVN+IETGQVPFPNYR+ GPA RGF F D+E
Subjt:  MGSGSNWTAQQNKAFENALAIYDKNTPGRWHILAKAVGSKTAEEVKRHYDRLVEDVNRIETGQVPFPNYRKPGPAGRGFRF-DEE

A0A6J1CC55 protein RADIALIS-like 32.2e-2976.74Show/hide
Query:  AMGS-GSNWTAQQNKAFENALAIYDKNTPGRWHILAKAVGSKTAEEVKRHYDRLVEDVNRIETGQVPFPNYRKPGPAGRGFRFDEE
        AMGS GSNWTA+QNK FENALA+YDK+TP RWH LA+AVG KTAEEVKRHY+RLV+DVN+IETGQVPFPNYRK     RGF F +E
Subjt:  AMGS-GSNWTAQQNKAFENALAIYDKNTPGRWHILAKAVGSKTAEEVKRHYDRLVEDVNRIETGQVPFPNYRKPGPAGRGFRFDEE

A0A6J1IJ89 protein RADIALIS-like 31.3e-4095.35Show/hide
Query:  MAMGSGSNWTAQQNKAFENALAIYDKNTPGRWHILAKAVGSKTAEEVKRHYDRLVEDVNRIETGQVPFPNYRKPGPAGRGFRFDEE
        MAMGSG NWTAQQNKAFENALAIYDKNTPGRWHILAKAVGSKTAEEVKRHYDRLVEDVNRIETGQVPFPNYRKPGPAGRGFRF ++
Subjt:  MAMGSGSNWTAQQNKAFENALAIYDKNTPGRWHILAKAVGSKTAEEVKRHYDRLVEDVNRIETGQVPFPNYRKPGPAGRGFRFDEE

SwissProt top hitse value%identityAlignment
F4JVB8 Protein RADIALIS-like 13.9e-2359.3Show/hide
Query:  MAMGSGSNWTAQQNKAFENALAIYDKNTPGRWHILAKAVGSKTAEEVKRHYDRLVEDVNRIETGQVPFPNYRKPGPAGRGFRFDEE
        M+  S  +WTA+QNKAFE ALA YD++TP RW  +AK VG KT EEVKRHY+ LV+D+N IE G VPFPNYR  G    G    EE
Subjt:  MAMGSGSNWTAQQNKAFENALAIYDKNTPGRWHILAKAVGSKTAEEVKRHYDRLVEDVNRIETGQVPFPNYRKPGPAGRGFRFDEE

Q1A173 Protein RADIALIS-like 61.6e-2171.21Show/hide
Query:  SNWTAQQNKAFENALAIYDKNTPGRWHILAKAVGSKTAEEVKRHYDRLVEDVNRIETGQVPFPNYR
        S WT  QNK FE ALA+YDK+TP RWH +AKAVG KT EEVKRHYD LVED+  IETG+VP PNY+
Subjt:  SNWTAQQNKAFENALAIYDKNTPGRWHILAKAVGSKTAEEVKRHYDRLVEDVNRIETGQVPFPNYR

Q58FS3 Transcription factor RADIALIS6.2e-2162.5Show/hide
Query:  GSGSNWTAQQNKAFENALAIYDKNTPGRWHILAKAVGSKTAEEVKRHYDRLVEDVNRIETGQVPFPNYRKPG
        GSG  W+A++NKAFE ALA+YDK+TP RW  +A+AV  +T EEVK+HY+ LVED+  IE+G+VPFPNYR  G
Subjt:  GSGSNWTAQQNKAFENALAIYDKNTPGRWHILAKAVGSKTAEEVKRHYDRLVEDVNRIETGQVPFPNYRKPG

Q6NNN0 Protein RADIALIS-like 31.4e-2058.11Show/hide
Query:  AMGSGSNWTAQQNKAFENALAIYDKNTPGRWHILAKAVGSKTAEEVKRHYDRLVEDVNRIETGQVPFPNYRKPG
        +M S ++WT ++NK FE ALA YD++TP RWH +A+AVG K+AEEV+RHY+ L+ DVN IE+G+ P PNYR  G
Subjt:  AMGSGSNWTAQQNKAFENALAIYDKNTPGRWHILAKAVGSKTAEEVKRHYDRLVEDVNRIETGQVPFPNYRKPG

Q9SIJ5 Protein RADIALIS-like 22.1e-2160.71Show/hide
Query:  GSGSNWTAQQNKAFENALAIYDKNTPGRWHILAKAVGSKTAEEVKRHYDRLVEDVNRIETGQVPFPNYR-KPGPAGRGFRFDEE
        GSGS WT +QNKAFE ALA+YD++TP RWH +A+AVG KT EE KR YD LV D+  IE G VPFP+Y+   G + RG   DEE
Subjt:  GSGSNWTAQQNKAFENALAIYDKNTPGRWHILAKAVGSKTAEEVKRHYDRLVEDVNRIETGQVPFPNYR-KPGPAGRGFRFDEE

Arabidopsis top hitse value%identityAlignment
AT1G19510.1 RAD-like 51.3e-2164.79Show/hide
Query:  AMGSGSNWTAQQNKAFENALAIYDKNTPGRWHILAKAVGSKTAEEVKRHYDRLVEDVNRIETGQVPFPNYR
        +M S S+WT++QNK FE ALA+YDK+TP RW  +AKAVGSK+AEEVKRHYD LVED+  IE   VP P Y+
Subjt:  AMGSGSNWTAQQNKAFENALAIYDKNTPGRWHILAKAVGSKTAEEVKRHYDRLVEDVNRIETGQVPFPNYR

AT1G75250.1 RAD-like 61.2e-2271.21Show/hide
Query:  SNWTAQQNKAFENALAIYDKNTPGRWHILAKAVGSKTAEEVKRHYDRLVEDVNRIETGQVPFPNYR
        S WT  QNK FE ALA+YDK+TP RWH +AKAVG KT EEVKRHYD LVED+  IETG+VP PNY+
Subjt:  SNWTAQQNKAFENALAIYDKNTPGRWHILAKAVGSKTAEEVKRHYDRLVEDVNRIETGQVPFPNYR

AT1G75250.2 RAD-like 61.2e-2271.21Show/hide
Query:  SNWTAQQNKAFENALAIYDKNTPGRWHILAKAVGSKTAEEVKRHYDRLVEDVNRIETGQVPFPNYR
        S WT  QNK FE ALA+YDK+TP RWH +AKAVG KT EEVKRHYD LVED+  IETG+VP PNY+
Subjt:  SNWTAQQNKAFENALAIYDKNTPGRWHILAKAVGSKTAEEVKRHYDRLVEDVNRIETGQVPFPNYR

AT2G21650.1 Homeodomain-like superfamily protein1.5e-2260.71Show/hide
Query:  GSGSNWTAQQNKAFENALAIYDKNTPGRWHILAKAVGSKTAEEVKRHYDRLVEDVNRIETGQVPFPNYR-KPGPAGRGFRFDEE
        GSGS WT +QNKAFE ALA+YD++TP RWH +A+AVG KT EE KR YD LV D+  IE G VPFP+Y+   G + RG   DEE
Subjt:  GSGSNWTAQQNKAFENALAIYDKNTPGRWHILAKAVGSKTAEEVKRHYDRLVEDVNRIETGQVPFPNYR-KPGPAGRGFRFDEE

AT4G39250.1 RAD-like 12.8e-2459.3Show/hide
Query:  MAMGSGSNWTAQQNKAFENALAIYDKNTPGRWHILAKAVGSKTAEEVKRHYDRLVEDVNRIETGQVPFPNYRKPGPAGRGFRFDEE
        M+  S  +WTA+QNKAFE ALA YD++TP RW  +AK VG KT EEVKRHY+ LV+D+N IE G VPFPNYR  G    G    EE
Subjt:  MAMGSGSNWTAQQNKAFENALAIYDKNTPGRWHILAKAVGSKTAEEVKRHYDRLVEDVNRIETGQVPFPNYRKPGPAGRGFRFDEE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGATGGGGTCTGGTTCGAATTGGACGGCGCAGCAGAACAAAGCGTTCGAGAATGCTTTAGCCATCTACGACAAAAACACGCCGGGGCGGTGGCACATCCTCGCCAA
AGCCGTCGGCTCGAAGACGGCGGAGGAAGTGAAACGCCACTACGACAGGCTCGTTGAAGATGTCAACAGGATCGAGACCGGCCAAGTTCCTTTCCCTAATTACAGAAAAC
CCGGACCCGCAGGCCGAGGATTTCGCTTTGATGAGGAGCCTACGCTTGCATTGAAATATGAAGGCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCGATGGGGTCTGGTTCGAATTGGACGGCGCAGCAGAACAAAGCGTTCGAGAATGCTTTAGCCATCTACGACAAAAACACGCCGGGGCGGTGGCACATCCTCGCCAA
AGCCGTCGGCTCGAAGACGGCGGAGGAAGTGAAACGCCACTACGACAGGCTCGTTGAAGATGTCAACAGGATCGAGACCGGCCAAGTTCCTTTCCCTAATTACAGAAAAC
CCGGACCCGCAGGCCGAGGATTTCGCTTTGATGAGGAGCCTACGCTTGCATTGAAATATGAAGGCTAA
Protein sequenceShow/hide protein sequence
MAMGSGSNWTAQQNKAFENALAIYDKNTPGRWHILAKAVGSKTAEEVKRHYDRLVEDVNRIETGQVPFPNYRKPGPAGRGFRFDEEPTLALKYEG