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Carg08737 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg08737
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionDNA-3-methyladenine glycosylase, putative
Genome locationCarg_Chr09:737185..737580
RNA-Seq ExpressionCarg08737
SyntenyCarg08737
Gene Ontology termsGO:0006284 - base-excision repair (biological process)
GO:0008725 - DNA-3-methyladenine glycosylase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6591330.1 hypothetical protein SDJN03_13676, partial [Cucurbita argyrosperma subsp. sororia]6.1e-64100Show/hide
Query:  MSVATKLHSHAKPVLESRAILGPGGNRDRAPEKPKCKQETLKNSEKQNKALPAIPESVIRDNISIGSSCSSDSLSSNYSTKLLNPKVKPCDVKPVKAVAA
        MSVATKLHSHAKPVLESRAILGPGGNRDRAPEKPKCKQETLKNSEKQNKALPAIPESVIRDNISIGSSCSSDSLSSNYSTKLLNPKVKPCDVKPVKAVAA
Subjt:  MSVATKLHSHAKPVLESRAILGPGGNRDRAPEKPKCKQETLKNSEKQNKALPAIPESVIRDNISIGSSCSSDSLSSNYSTKLLNPKVKPCDVKPVKAVAA

Query:  GGDPNVTTTTPRLSVPGKRCGWITPYS
        GGDPNVTTTTPRLSVPGKRCGWITPYS
Subjt:  GGDPNVTTTTPRLSVPGKRCGWITPYS

KAG7024212.1 hypothetical protein SDJN02_13026, partial [Cucurbita argyrosperma subsp. argyrosperma]2.2e-66100Show/hide
Query:  MSVATKLHSHAKPVLESRAILGPGGNRDRAPEKPKCKQETLKNSEKQNKALPAIPESVIRDNISIGSSCSSDSLSSNYSTKLLNPKVKPCDVKPVKAVAA
        MSVATKLHSHAKPVLESRAILGPGGNRDRAPEKPKCKQETLKNSEKQNKALPAIPESVIRDNISIGSSCSSDSLSSNYSTKLLNPKVKPCDVKPVKAVAA
Subjt:  MSVATKLHSHAKPVLESRAILGPGGNRDRAPEKPKCKQETLKNSEKQNKALPAIPESVIRDNISIGSSCSSDSLSSNYSTKLLNPKVKPCDVKPVKAVAA

Query:  GGDPNVTTTTPRLSVPGKRCGWITPYSGKQA
        GGDPNVTTTTPRLSVPGKRCGWITPYSGKQA
Subjt:  GGDPNVTTTTPRLSVPGKRCGWITPYSGKQA

XP_022935907.1 uncharacterized protein LOC111442674 [Cucurbita moschata]7.9e-6499.21Show/hide
Query:  MSVATKLHSHAKPVLESRAILGPGGNRDRAPEKPKCKQETLKNSEKQNKALPAIPESVIRDNISIGSSCSSDSLSSNYSTKLLNPKVKPCDVKPVKAVAA
        MSVATKLHSHAKPVLESRAILGPGGNRDRAPEKPKCKQETLKNSEKQNKALPAIPESV+RDNISIGSSCSSDSLSSNYSTKLLNPKVKPCDVKPVKAVAA
Subjt:  MSVATKLHSHAKPVLESRAILGPGGNRDRAPEKPKCKQETLKNSEKQNKALPAIPESVIRDNISIGSSCSSDSLSSNYSTKLLNPKVKPCDVKPVKAVAA

Query:  GGDPNVTTTTPRLSVPGKRCGWITPYS
        GGDPNVTTTTPRLSVPGKRCGWITPYS
Subjt:  GGDPNVTTTTPRLSVPGKRCGWITPYS

XP_022976629.1 uncharacterized protein LOC111476975 [Cucurbita maxima]5.5e-5794.49Show/hide
Query:  MSVATKLHSHAKPVLESRAILGPGGNRDRAPEKPKCKQETLKNSEKQNKALPAIPESVIRDNISIGSSCSSDSLSSNYSTKLLNPKVKPCDVKPVKAVAA
        MSVATKLHSHAKPVLESRAILGPGGNRDRAPEKPKCKQETLKNSEKQNKALPAIPESVIRDNISIGSSCSSDSLSSN S KLLNPK     VKPVKAVAA
Subjt:  MSVATKLHSHAKPVLESRAILGPGGNRDRAPEKPKCKQETLKNSEKQNKALPAIPESVIRDNISIGSSCSSDSLSSNYSTKLLNPKVKPCDVKPVKAVAA

Query:  GGDPNVTTTTPRLSVPGKRCGWITPYS
        GGDPNVTTTTPRLSVPGKRCGWITPYS
Subjt:  GGDPNVTTTTPRLSVPGKRCGWITPYS

XP_023535246.1 uncharacterized protein LOC111796735 [Cucurbita pepo subsp. pepo]3.1e-6095.28Show/hide
Query:  MSVATKLHSHAKPVLESRAILGPGGNRDRAPEKPKCKQETLKNSEKQNKALPAIPESVIRDNISIGSSCSSDSLSSNYSTKLLNPKVKPCDVKPVKAVAA
        MSVATKLHSHAKPVLESR ILGPGGNRDRAPEKPKCKQETLKNSEKQNKALPAIPESVIRDN SIGSSCSSDSL S+YSTKLLNPKVKPCDVKPVKAVAA
Subjt:  MSVATKLHSHAKPVLESRAILGPGGNRDRAPEKPKCKQETLKNSEKQNKALPAIPESVIRDNISIGSSCSSDSLSSNYSTKLLNPKVKPCDVKPVKAVAA

Query:  GGDPNVTTTTPRLSVPGKRCGWITPYS
        GGDPNVT+TTP LSVPGKRCGWITPYS
Subjt:  GGDPNVTTTTPRLSVPGKRCGWITPYS

TrEMBL top hitse value%identityAlignment
A0A6J1CHU1 uncharacterized protein LOC1110116231.9e-4778.91Show/hide
Query:  MSVATKLHSHAKPVLESRAILGPGGNRDRAPEKPKCKQE-TLKNSEKQNKALPAIPESVIRDNISIGSSCSSDSLSSNYSTKLLNPKVKPCDVKPVKAVA
        M VA K  SHAKPVLESRAILGPGGNRDR PEKP+CK E TL  +EKQNKALPA+P+SVIRDN+S+GSSCSSDSLSSNYS KLLNPKVKP  VKPVKAVA
Subjt:  MSVATKLHSHAKPVLESRAILGPGGNRDRAPEKPKCKQE-TLKNSEKQNKALPAIPESVIRDNISIGSSCSSDSLSSNYSTKLLNPKVKPCDVKPVKAVA

Query:  AGGDPNVTTTTPRLSVPGKRCGWITPYS
        AG + + TTT+PR SVP KRC WITPYS
Subjt:  AGGDPNVTTTTPRLSVPGKRCGWITPYS

A0A6J1F6S0 uncharacterized protein LOC1114426743.8e-6499.21Show/hide
Query:  MSVATKLHSHAKPVLESRAILGPGGNRDRAPEKPKCKQETLKNSEKQNKALPAIPESVIRDNISIGSSCSSDSLSSNYSTKLLNPKVKPCDVKPVKAVAA
        MSVATKLHSHAKPVLESRAILGPGGNRDRAPEKPKCKQETLKNSEKQNKALPAIPESV+RDNISIGSSCSSDSLSSNYSTKLLNPKVKPCDVKPVKAVAA
Subjt:  MSVATKLHSHAKPVLESRAILGPGGNRDRAPEKPKCKQETLKNSEKQNKALPAIPESVIRDNISIGSSCSSDSLSSNYSTKLLNPKVKPCDVKPVKAVAA

Query:  GGDPNVTTTTPRLSVPGKRCGWITPYS
        GGDPNVTTTTPRLSVPGKRCGWITPYS
Subjt:  GGDPNVTTTTPRLSVPGKRCGWITPYS

A0A6J1FIT9 uncharacterized protein LOC1114461251.5e-4780.31Show/hide
Query:  MSVATKLHSHAKPVLESRAILGPGGNRDRAPEKPKCKQETLKNSEKQNKALPAIPESVIRDNISIGSSCSSDSLSSNYSTKLLNPKVKPCDVKPVKAVAA
        MSVATKL SHA+PVLESRAILGPGGNRDRAPEKPKCKQE LK + KQNKALP + ESV+RDN+S+GSSCSSDSLSSNYS KLLN K KP   KPVK VAA
Subjt:  MSVATKLHSHAKPVLESRAILGPGGNRDRAPEKPKCKQETLKNSEKQNKALPAIPESVIRDNISIGSSCSSDSLSSNYSTKLLNPKVKPCDVKPVKAVAA

Query:  GGDPNVTTTTPRLSVPGKRCGWITPYS
        GGD N TTT+P LSV GKRC WITPYS
Subjt:  GGDPNVTTTTPRLSVPGKRCGWITPYS

A0A6J1IHE9 uncharacterized protein LOC1114769752.7e-5794.49Show/hide
Query:  MSVATKLHSHAKPVLESRAILGPGGNRDRAPEKPKCKQETLKNSEKQNKALPAIPESVIRDNISIGSSCSSDSLSSNYSTKLLNPKVKPCDVKPVKAVAA
        MSVATKLHSHAKPVLESRAILGPGGNRDRAPEKPKCKQETLKNSEKQNKALPAIPESVIRDNISIGSSCSSDSLSSN S KLLNPK     VKPVKAVAA
Subjt:  MSVATKLHSHAKPVLESRAILGPGGNRDRAPEKPKCKQETLKNSEKQNKALPAIPESVIRDNISIGSSCSSDSLSSNYSTKLLNPKVKPCDVKPVKAVAA

Query:  GGDPNVTTTTPRLSVPGKRCGWITPYS
        GGDPNVTTTTPRLSVPGKRCGWITPYS
Subjt:  GGDPNVTTTTPRLSVPGKRCGWITPYS

A0A6J1J188 uncharacterized protein LOC1114804125.6e-4780.31Show/hide
Query:  MSVATKLHSHAKPVLESRAILGPGGNRDRAPEKPKCKQETLKNSEKQNKALPAIPESVIRDNISIGSSCSSDSLSSNYSTKLLNPKVKPCDVKPVKAVAA
        MSVATKL SHA+PVLESRAILGPGGNRDRAPEKPKCKQE LK + KQNKALP + ESV+RDNIS+GSSCSSDSLSSNYS KLLN K KP   KPVK VAA
Subjt:  MSVATKLHSHAKPVLESRAILGPGGNRDRAPEKPKCKQETLKNSEKQNKALPAIPESVIRDNISIGSSCSSDSLSSNYSTKLLNPKVKPCDVKPVKAVAA

Query:  GGDPNVTTTTPRLSVPGKRCGWITPYS
        GGD N TTT+P L V GKRC WITPYS
Subjt:  GGDPNVTTTTPRLSVPGKRCGWITPYS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G75090.1 DNA glycosylase superfamily protein1.4e-0535.38Show/hide
Query:  MSVATKLHSHAKPVLESRAILGPGGNRDRAPEKPKCKQETLKNSEKQNKAL--PAIPESVIRDNISIGSSCSS-DSLSSNYSTKLLNPKVKPCDVKPVKA
        MS+ +KL S  KP+ ESRAIL   GNR +  +    K+  L     ++ A   P    SV  D+ S  SS S   S+++  S K+  P  K   V+ +  
Subjt:  MSVATKLHSHAKPVLESRAILGPGGNRDRAPEKPKCKQETLKNSEKQNKAL--PAIPESVIRDNISIGSSCSS-DSLSSNYSTKLLNPKVKPCDVKPVKA

Query:  VAAGGDPNVTTTTPRLSVPGKRCGWITPYS
        V A     V   +P++  P KRC WITP S
Subjt:  VAAGGDPNVTTTTPRLSVPGKRCGWITPYS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTGTGGCTACGAAGCTCCATTCGCACGCTAAACCGGTTTTGGAGTCCCGAGCAATTCTTGGACCCGGCGGGAACAGAGATAGGGCGCCTGAGAAGCCGAAATGTAA
ACAGGAGACTTTGAAGAACTCAGAGAAGCAGAACAAGGCGCTTCCGGCGATTCCTGAATCGGTTATTCGAGACAATATCTCCATCGGGAGCTCCTGCTCATCCGATTCTT
TATCAAGCAACTATTCGACCAAATTGTTGAATCCTAAAGTGAAGCCCTGCGATGTGAAGCCTGTGAAGGCTGTTGCTGCCGGAGGTGATCCAAACGTAACCACAACGACG
CCTAGGCTCTCGGTTCCGGGGAAACGCTGTGGTTGGATAACGCCTTATTCTGGTAAGCAAGCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCTGTGGCTACGAAGCTCCATTCGCACGCTAAACCGGTTTTGGAGTCCCGAGCAATTCTTGGACCCGGCGGGAACAGAGATAGGGCGCCTGAGAAGCCGAAATGTAA
ACAGGAGACTTTGAAGAACTCAGAGAAGCAGAACAAGGCGCTTCCGGCGATTCCTGAATCGGTTATTCGAGACAATATCTCCATCGGGAGCTCCTGCTCATCCGATTCTT
TATCAAGCAACTATTCGACCAAATTGTTGAATCCTAAAGTGAAGCCCTGCGATGTGAAGCCTGTGAAGGCTGTTGCTGCCGGAGGTGATCCAAACGTAACCACAACGACG
CCTAGGCTCTCGGTTCCGGGGAAACGCTGTGGTTGGATAACGCCTTATTCTGGTAAGCAAGCTTAA
Protein sequenceShow/hide protein sequence
MSVATKLHSHAKPVLESRAILGPGGNRDRAPEKPKCKQETLKNSEKQNKALPAIPESVIRDNISIGSSCSSDSLSSNYSTKLLNPKVKPCDVKPVKAVAAGGDPNVTTTT
PRLSVPGKRCGWITPYSGKQA