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Carg08738 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg08738
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionDNA glycosylase superfamily protein
Genome locationCarg_Chr09:737986..739090
RNA-Seq ExpressionCarg08738
SyntenyCarg08738
Gene Ontology termsGO:0006284 - base-excision repair (biological process)
GO:0008725 - DNA-3-methyladenine glycosylase activity (molecular function)
InterPro domainsIPR005019 - Methyladenine glycosylase
IPR011257 - DNA glycosylase


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6591330.1 hypothetical protein SDJN03_13676, partial [Cucurbita argyrosperma subsp. sororia]3.3e-3274.55Show/hide
Query:  KLFELLVLSQALAELTWPLILCKRDIFRKVFNDFDPSTIAQFTQNEFTTLKENGIQLLSEPKLRAIVENANQVLKNTLRWQSIRTMVCFSYSNITLVVSV
        KLFELLVLSQALAELTWPLILCKRDIFRKVFNDFDPSTIAQFTQNEFTTLKENGIQLLSEPKLRAIVENANQVLK    + +  +  C+S+ N   + + 
Subjt:  KLFELLVLSQALAELTWPLILCKRDIFRKVFNDFDPSTIAQFTQNEFTTLKENGIQLLSEPKLRAIVENANQVLKNTLRWQSIRTMVCFSYSNITLVVSV

Query:  RFKVTSRRIP
        RF+  +R++P
Subjt:  RFKVTSRRIP
KAG7024213.1 tag, partial [Cucurbita argyrosperma subsp. argyrosperma]7.7e-58100Show/hide
Query:  KLFELLVLSQALAELTWPLILCKRDIFRKVFNDFDPSTIAQFTQNEFTTLKENGIQLLSEPKLRAIVENANQVLKNTLRWQSIRTMVCFSYSNITLVVSV
        KLFELLVLSQALAELTWPLILCKRDIFRKVFNDFDPSTIAQFTQNEFTTLKENGIQLLSEPKLRAIVENANQVLKNTLRWQSIRTMVCFSYSNITLVVSV
Subjt:  KLFELLVLSQALAELTWPLILCKRDIFRKVFNDFDPSTIAQFTQNEFTTLKENGIQLLSEPKLRAIVENANQVLKNTLRWQSIRTMVCFSYSNITLVVSV

Query:  RFKVTSRRIPGSNSNIRTH
        RFKVTSRRIPGSNSNIRTH
Subjt:  RFKVTSRRIPGSNSNIRTH
XP_022935907.1 uncharacterized protein LOC111442674 [Cucurbita moschata]3.3e-3274.55Show/hide
Query:  KLFELLVLSQALAELTWPLILCKRDIFRKVFNDFDPSTIAQFTQNEFTTLKENGIQLLSEPKLRAIVENANQVLKNTLRWQSIRTMVCFSYSNITLVVSV
        KLFELLVLSQALAELTWPLILCKRDIFRKVFNDFDPSTIAQFTQNEFTTLKENGIQLLSEPKLRAIVENANQVLK    + +  +  C+S+ N   + + 
Subjt:  KLFELLVLSQALAELTWPLILCKRDIFRKVFNDFDPSTIAQFTQNEFTTLKENGIQLLSEPKLRAIVENANQVLKNTLRWQSIRTMVCFSYSNITLVVSV

Query:  RFKVTSRRIP
        RF+  +R++P
Subjt:  RFKVTSRRIP
XP_022976629.1 uncharacterized protein LOC111476975 [Cucurbita maxima]2.5e-3275.45Show/hide
Query:  KLFELLVLSQALAELTWPLILCKRDIFRKVFNDFDPSTIAQFTQNEFTTLKENGIQLLSEPKLRAIVENANQVLKNTLRWQSIRTMVCFSYSNITLVVSV
        KLFELLVLSQALAELTWPLILCKRDIFRKVFNDFDPSTIAQFTQNEFTTLKENGIQLLSEPKLRAIVENANQVLK    + +  +  C+S+ N   + + 
Subjt:  KLFELLVLSQALAELTWPLILCKRDIFRKVFNDFDPSTIAQFTQNEFTTLKENGIQLLSEPKLRAIVENANQVLKNTLRWQSIRTMVCFSYSNITLVVSV

Query:  RFKVTSRRIP
        RF+  +R+IP
Subjt:  RFKVTSRRIP
XP_023535246.1 uncharacterized protein LOC111796735 [Cucurbita pepo subsp. pepo]9.5e-3273.64Show/hide
Query:  KLFELLVLSQALAELTWPLILCKRDIFRKVFNDFDPSTIAQFTQNEFTTLKENGIQLLSEPKLRAIVENANQVLKNTLRWQSIRTMVCFSYSNITLVVSV
        KLFELLVLSQALAELTWPLILCKRDIFRKVFNDFDPSTIA+FTQNEFTTLKENGIQLLSEPKLRAIVENANQVLK    + +  +  C+S+ N   + + 
Subjt:  KLFELLVLSQALAELTWPLILCKRDIFRKVFNDFDPSTIAQFTQNEFTTLKENGIQLLSEPKLRAIVENANQVLKNTLRWQSIRTMVCFSYSNITLVVSV

Query:  RFKVTSRRIP
        RF+  +R++P
Subjt:  RFKVTSRRIP
TrEMBL top hitse value%identityAlignment
A0A0A0LG22 Uncharacterized protein8.1e-2977.42Show/hide
Query:  KLFELLVLSQALAELTWPLILCKRDIFRKVFNDFDPSTIAQFTQNEFTTLKENGIQLLSEPKLRAIVENANQVLKNTLRWQSIRTMVCFSYSN
        KLFELLVLSQALAELTWPLIL KRD+FRKV NDFDPS+IAQFT+NEFTTLK NGIQLLSEPKLRAIV+NANQVLK    + S  +  C+S+ N
Subjt:  KLFELLVLSQALAELTWPLILCKRDIFRKVFNDFDPSTIAQFTQNEFTTLKENGIQLLSEPKLRAIVENANQVLKNTLRWQSIRTMVCFSYSN
A0A1S3CRP1 probable GMP synthase [glutamine-hydrolyzing]1.4e-2878.49Show/hide
Query:  KLFELLVLSQALAELTWPLILCKRDIFRKVFNDFDPSTIAQFTQNEFTTLKENGIQLLSEPKLRAIVENANQVLKNTLRWQSIRTMVCFSYSN
        KLFELLVLSQALAELTWPLIL KRDIFRKV NDFDPS+IAQF +NEFTTLK NGIQLLSEPKLRAIVENANQVLK    + S  +  C+S+ N
Subjt:  KLFELLVLSQALAELTWPLILCKRDIFRKVFNDFDPSTIAQFTQNEFTTLKENGIQLLSEPKLRAIVENANQVLKNTLRWQSIRTMVCFSYSN
A0A5D3BFN8 Putative GMP synthase1.4e-2878.49Show/hide
Query:  KLFELLVLSQALAELTWPLILCKRDIFRKVFNDFDPSTIAQFTQNEFTTLKENGIQLLSEPKLRAIVENANQVLKNTLRWQSIRTMVCFSYSN
        KLFELLVLSQALAELTWPLIL KRDIFRKV NDFDPS+IAQF +NEFTTLK NGIQLLSEPKLRAIVENANQVLK    + S  +  C+S+ N
Subjt:  KLFELLVLSQALAELTWPLILCKRDIFRKVFNDFDPSTIAQFTQNEFTTLKENGIQLLSEPKLRAIVENANQVLKNTLRWQSIRTMVCFSYSN
A0A6J1F6S0 uncharacterized protein LOC1114426741.6e-3274.55Show/hide
Query:  KLFELLVLSQALAELTWPLILCKRDIFRKVFNDFDPSTIAQFTQNEFTTLKENGIQLLSEPKLRAIVENANQVLKNTLRWQSIRTMVCFSYSNITLVVSV
        KLFELLVLSQALAELTWPLILCKRDIFRKVFNDFDPSTIAQFTQNEFTTLKENGIQLLSEPKLRAIVENANQVLK    + +  +  C+S+ N   + + 
Subjt:  KLFELLVLSQALAELTWPLILCKRDIFRKVFNDFDPSTIAQFTQNEFTTLKENGIQLLSEPKLRAIVENANQVLKNTLRWQSIRTMVCFSYSNITLVVSV

Query:  RFKVTSRRIP
        RF+  +R++P
Subjt:  RFKVTSRRIP
A0A6J1IHE9 uncharacterized protein LOC1114769751.2e-3275.45Show/hide
Query:  KLFELLVLSQALAELTWPLILCKRDIFRKVFNDFDPSTIAQFTQNEFTTLKENGIQLLSEPKLRAIVENANQVLKNTLRWQSIRTMVCFSYSNITLVVSV
        KLFELLVLSQALAELTWPLILCKRDIFRKVFNDFDPSTIAQFTQNEFTTLKENGIQLLSEPKLRAIVENANQVLK    + +  +  C+S+ N   + + 
Subjt:  KLFELLVLSQALAELTWPLILCKRDIFRKVFNDFDPSTIAQFTQNEFTTLKENGIQLLSEPKLRAIVENANQVLKNTLRWQSIRTMVCFSYSNITLVVSV

Query:  RFKVTSRRIP
        RF+  +R+IP
Subjt:  RFKVTSRRIP
SwissProt top hitse value%identityAlignment
P05100 DNA-3-methyladenine glycosylase 12.3e-0429.82Show/hide
Query:  KLFELLVLSQALAELTWPLILCKRDIFRKVFNDFDPSTIAQFTQNEFTTLKENGIQLLSEPKLRAIVENANQVLKNTLRWQSIRTMVCFSYSNITLVVSV
        KLFE++ L    A L+W  +L KR+ +R  F+ FDP  +A   + +   L ++   +    K++AI+ NA   L+     Q+    V F +S +     V
Subjt:  KLFELLVLSQALAELTWPLILCKRDIFRKVFNDFDPSTIAQFTQNEFTTLKENGIQLLSEPKLRAIVENANQVLKNTLRWQSIRTMVCFSYSNITLVVSV

Query:  RFKVTSRRIPGSNS
            T   IP S S
Subjt:  RFKVTSRRIPGSNS
P44321 DNA-3-methyladenine glycosylase1.2e-0537.84Show/hide
Query:  KLFELLVLSQALAELTWPLILCKRDIFRKVFNDFDPSTIAQFTQNEFTTLKENGIQLLSEPKLRAIVENANQVL
        KLFE + L    A L+W  +L KR+ +R+ F+ FDP  IA+ T  +     +N   +    KL AIV+NA   L
Subjt:  KLFELLVLSQALAELTWPLILCKRDIFRKVFNDFDPSTIAQFTQNEFTTLKENGIQLLSEPKLRAIVENANQVL
Q7VG78 Probable GMP synthase [glutamine-hydrolyzing]9.3e-0640Show/hide
Query:  KLFELLVLSQALAELTWPLILCKRDIFRKVFNDFDPSTIAQFTQNEFTTLKENGIQLLSEPKLRAIVENA
        KLFE LVL    A L+W  IL KR+ FR  F+DFDP  +A + +++   L  N   + +  K+ A + NA
Subjt:  KLFELLVLSQALAELTWPLILCKRDIFRKVFNDFDPSTIAQFTQNEFTTLKENGIQLLSEPKLRAIVENA
Arabidopsis top hitse value%identityAlignment
AT1G15970.1 DNA glycosylase superfamily protein8.0e-1350.67Show/hide
Query:  KLFELLVLSQALAELTWPLILCKRDIFRKVFNDFDPSTIAQFTQNEFTTLKENGIQLLSEPKLRAIVENANQVLK
        KLFELL LS ALAEL+W  IL +R I R+VF DFDP  +A+    + T      I LLSE K+R+I++N+  V K
Subjt:  KLFELLVLSQALAELTWPLILCKRDIFRKVFNDFDPSTIAQFTQNEFTTLKENGIQLLSEPKLRAIVENANQVLK
AT1G75090.1 DNA glycosylase superfamily protein6.1e-2166.67Show/hide
Query:  KLFELLVLSQALAELTWPLILCKRDIFRKVFNDFDPSTIAQFTQNEFTTLKENGIQLLSEPKLRAIVENANQVLK
        KLFELLV SQALAE +WP IL +RD FRK+F +FDPS IAQFT+    +L+ NG  +LSE KLRAIVENA  VLK
Subjt:  KLFELLVLSQALAELTWPLILCKRDIFRKVFNDFDPSTIAQFTQNEFTTLKENGIQLLSEPKLRAIVENANQVLK
AT1G80850.1 DNA glycosylase superfamily protein1.3e-1557.33Show/hide
Query:  KLFELLVLSQALAELTWPLILCKRDIFRKVFNDFDPSTIAQFTQNEFTTLKENGIQLLSEPKLRAIVENANQVLK
        +LFELL LS ALAEL+W  IL KR +FR+VF DFDP  I++ T  + T+ +     LLSE KLR+I+ENANQV K
Subjt:  KLFELLVLSQALAELTWPLILCKRDIFRKVFNDFDPSTIAQFTQNEFTTLKENGIQLLSEPKLRAIVENANQVLK
AT5G57970.1 DNA glycosylase superfamily protein1.3e-1542.73Show/hide
Query:  KLFELLVLSQALAELTWPLILCKRDIFRKVFNDFDPSTIAQFTQNEFTTLKENGIQLLSEPKLRAIVENANQVLKNTLRWQSIRTMVCFSYSNITLVVSV
        +LFELLVLS ALAE TWP IL KR  FR+VF DFDP+ I +  + +          LLS+ KLRA++ENA Q+LK    + S    +     N  +V   
Subjt:  KLFELLVLSQALAELTWPLILCKRDIFRKVFNDFDPSTIAQFTQNEFTTLKENGIQLLSEPKLRAIVENANQVLKNTLRWQSIRTMVCFSYSNITLVVSV

Query:  RFKVTSRRIP
        R++   R++P
Subjt:  RFKVTSRRIP
AT5G57970.2 DNA glycosylase superfamily protein1.3e-1542.73Show/hide
Query:  KLFELLVLSQALAELTWPLILCKRDIFRKVFNDFDPSTIAQFTQNEFTTLKENGIQLLSEPKLRAIVENANQVLKNTLRWQSIRTMVCFSYSNITLVVSV
        +LFELLVLS ALAE TWP IL KR  FR+VF DFDP+ I +  + +          LLS+ KLRA++ENA Q+LK    + S    +     N  +V   
Subjt:  KLFELLVLSQALAELTWPLILCKRDIFRKVFNDFDPSTIAQFTQNEFTTLKENGIQLLSEPKLRAIVENANQVLKNTLRWQSIRTMVCFSYSNITLVVSV

Query:  RFKVTSRRIP
        R++   R++P
Subjt:  RFKVTSRRIP

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AAGCTGTTCGAGTTACTTGTATTATCACAAGCCTTAGCAGAGCTTACTTGGCCCTTGATTCTTTGCAAGAGAGATATATTTAGGAAGGTTTTTAATGATTTTGACCCATC
TACCATCGCACAGTTCACACAGAATGAGTTTACGACACTAAAAGAAAATGGCATCCAGCTCCTATCTGAACCAAAGCTTCGTGCAATCGTGGAGAACGCTAATCAAGTAC
TCAAGAACACGCTTCGGTGGCAGAGCATAAGAACAATGGTATGTTTCTCTTACTCCAACATAACATTAGTAGTTTCCGTAAGATTTAAGGTTACGAGTCGCAGAATTCCA
GGGTCGAATTCGAATATTCGAACTCATTAG
mRNA sequenceShow/hide mRNA sequence
AAGCTGTTCGAGTTACTTGTATTATCACAAGCCTTAGCAGAGCTTACTTGGCCCTTGATTCTTTGCAAGAGAGATATATTTAGGAAGGTTTTTAATGATTTTGACCCATC
TACCATCGCACAGTTCACACAGAATGAGTTTACGACACTAAAAGAAAATGGCATCCAGCTCCTATCTGAACCAAAGCTTCGTGCAATCGTGGAGAACGCTAATCAAGTAC
TCAAGAACACGCTTCGGTGGCAGAGCATAAGAACAATGGTATGTTTCTCTTACTCCAACATAACATTAGTAGTTTCCGTAAGATTTAAGGTTACGAGTCGCAGAATTCCA
GGGTCGAATTCGAATATTCGAACTCATTAG
Protein sequenceShow/hide protein sequence
KLFELLVLSQALAELTWPLILCKRDIFRKVFNDFDPSTIAQFTQNEFTTLKENGIQLLSEPKLRAIVENANQVLKNTLRWQSIRTMVCFSYSNITLVVSVRFKVTSRRIP
GSNSNIRTH