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Carg08773 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg08773
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionEF hand calcium-binding protein family
Genome locationCarg_Chr09:953333..953605
RNA-Seq ExpressionCarg08773
SyntenyCarg08773
Gene Ontology termsGO:0005509 - calcium ion binding (molecular function)
InterPro domainsIPR002048 - EF-hand domain
IPR011992 - EF-hand domain pair
IPR018247 - EF-Hand 1, calcium-binding site


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0064376.1 putative calcium-binding protein CML27 [Cucumis melo var. makuwa]1.1e-3280Show/hide
Query:  MARKSKTYQPRPKLSREQLSVIFRNHDGDGDGRLSTTELTAAFRYIGAFLPSYRALHALLHTDSDGDGFIGEKDFELLVNYAEKRKYTVI
        M+R+SKTY PR +LSREQL +IFRNHD D DGRLSTTELT AFRYIGAFLP YRA HAL H DSD DGFI EKDFELLVNYAE+R+YTVI
Subjt:  MARKSKTYQPRPKLSREQLSVIFRNHDGDGDGRLSTTELTAAFRYIGAFLPSYRALHALLHTDSDGDGFIGEKDFELLVNYAEKRKYTVI

KAG6591370.1 Polcalcin Bet v 4, partial [Cucurbita argyrosperma subsp. sororia]2.0e-42100Show/hide
Query:  MARKSKTYQPRPKLSREQLSVIFRNHDGDGDGRLSTTELTAAFRYIGAFLPSYRALHALLHTDSDGDGFIGEKDFELLVNYAEKRKYT
        MARKSKTYQPRPKLSREQLSVIFRNHDGDGDGRLSTTELTAAFRYIGAFLPSYRALHALLHTDSDGDGFIGEKDFELLVNYAEKRKYT
Subjt:  MARKSKTYQPRPKLSREQLSVIFRNHDGDGDGRLSTTELTAAFRYIGAFLPSYRALHALLHTDSDGDGFIGEKDFELLVNYAEKRKYT

KAG6608481.1 Polcalcin Bet v 4, partial [Cucurbita argyrosperma subsp. sororia]6.9e-3584.44Show/hide
Query:  MARKSKTYQPRPKLSREQLSVIFRNHDGDGDGRLSTTELTAAFRYIGAFLPSYRALHALLHTDSDGDGFIGEKDFELLVNYAEKRKYTVI
        MARK+K  QPRPKLSREQLSVIFRNHDGDGDGRLS TELT AFRYIGAFLPSYRA HAL +TDSD DGFIGEKDFE LVNY EKR YT++
Subjt:  MARKSKTYQPRPKLSREQLSVIFRNHDGDGDGRLSTTELTAAFRYIGAFLPSYRALHALLHTDSDGDGFIGEKDFELLVNYAEKRKYTVI

KAG7024248.1 Polcalcin Bet v 4, partial [Cucurbita argyrosperma subsp. argyrosperma]2.4e-43100Show/hide
Query:  MARKSKTYQPRPKLSREQLSVIFRNHDGDGDGRLSTTELTAAFRYIGAFLPSYRALHALLHTDSDGDGFIGEKDFELLVNYAEKRKYTVI
        MARKSKTYQPRPKLSREQLSVIFRNHDGDGDGRLSTTELTAAFRYIGAFLPSYRALHALLHTDSDGDGFIGEKDFELLVNYAEKRKYTVI
Subjt:  MARKSKTYQPRPKLSREQLSVIFRNHDGDGDGRLSTTELTAAFRYIGAFLPSYRALHALLHTDSDGDGFIGEKDFELLVNYAEKRKYTVI

KGN55185.1 hypothetical protein Csa_012915 [Cucumis sativus]2.9e-3381.11Show/hide
Query:  MARKSKTYQPRPKLSREQLSVIFRNHDGDGDGRLSTTELTAAFRYIGAFLPSYRALHALLHTDSDGDGFIGEKDFELLVNYAEKRKYTVI
        M+RKSK Y PR KLSREQL +IFRNHD D DGRLSTTELT AFRYIGAFLP+YRA HALLH DSD DGFIGEKDFE LVNYAE+R+YT+I
Subjt:  MARKSKTYQPRPKLSREQLSVIFRNHDGDGDGRLSTTELTAAFRYIGAFLPSYRALHALLHTDSDGDGFIGEKDFELLVNYAEKRKYTVI

TrEMBL top hitse value%identityAlignment
A0A0A0KZR6 Uncharacterized protein1.4e-3381.11Show/hide
Query:  MARKSKTYQPRPKLSREQLSVIFRNHDGDGDGRLSTTELTAAFRYIGAFLPSYRALHALLHTDSDGDGFIGEKDFELLVNYAEKRKYTVI
        M+RKSK Y PR KLSREQL +IFRNHD D DGRLSTTELT AFRYIGAFLP+YRA HALLH DSD DGFIGEKDFE LVNYAE+R+YT+I
Subjt:  MARKSKTYQPRPKLSREQLSVIFRNHDGDGDGRLSTTELTAAFRYIGAFLPSYRALHALLHTDSDGDGFIGEKDFELLVNYAEKRKYTVI

A0A5A7UY46 Putative calcium-binding protein CML107.3e-1452.56Show/hide
Query:  KLSREQLSVIFRNHDGDGDGRLSTTELTAAFRYIGAFLPSYRALHALLHTDSDGDGFIGEKDFELLVNYAEKRKYTVI
        KL +E++  IFR HD +GDGRLS  EL+ AF   GAF P YRA   L   D DGDGFI E++ E +V+YA K KY ++
Subjt:  KLSREQLSVIFRNHDGDGDGRLSTTELTAAFRYIGAFLPSYRALHALLHTDSDGDGFIGEKDFELLVNYAEKRKYTVI

A0A5A7VDB9 Putative calcium-binding protein CML275.3e-3380Show/hide
Query:  MARKSKTYQPRPKLSREQLSVIFRNHDGDGDGRLSTTELTAAFRYIGAFLPSYRALHALLHTDSDGDGFIGEKDFELLVNYAEKRKYTVI
        M+R+SKTY PR +LSREQL +IFRNHD D DGRLSTTELT AFRYIGAFLP YRA HAL H DSD DGFI EKDFELLVNYAE+R+YTVI
Subjt:  MARKSKTYQPRPKLSREQLSVIFRNHDGDGDGRLSTTELTAAFRYIGAFLPSYRALHALLHTDSDGDGFIGEKDFELLVNYAEKRKYTVI

A0A5N6RQV2 Uncharacterized protein1.5e-1456Show/hide
Query:  SREQLSVIFRNHDGDGDGRLSTTELTAAFRYIGAFLPSYRALHALLHTDSDGDGFIGEKDFELLVNYAEKRKYTV
        +R+QL  IFR+HD DGDG+LS  E+ AAF Y+G+   SYRA+ ALLH DSD DG++GE++ + LV+YA K  YT+
Subjt:  SREQLSVIFRNHDGDGDGRLSTTELTAAFRYIGAFLPSYRALHALLHTDSDGDGFIGEKDFELLVNYAEKRKYTV

A0A6J1CS20 calmodulin-like protein 51.6e-1347.78Show/hide
Query:  MARKSKTYQPRPKLSREQLSVIFRNHDGDGDGRLSTTELTAAFRYIGAFLPSYRALHALLHTDSDGDGFIGEKDFELLVNYAEKRKYTVI
        M  K    +P  KL RE++  IFR HD +GDG LS  EL+ AF  +GA LP YRA+  +L  D+DGDG I +++ E +V+YA K KY +I
Subjt:  MARKSKTYQPRPKLSREQLSVIFRNHDGDGDGRLSTTELTAAFRYIGAFLPSYRALHALLHTDSDGDGFIGEKDFELLVNYAEKRKYTVI

SwissProt top hitse value%identityAlignment
Q0DJV6 Probable calcium-binding protein CML182.3e-0436.21Show/hide
Query:  QLSVIFRNHDGDGDGRLSTTELTAAFRYIGAFLPSYRALHALLHTDSDGDGFIGEKDF
        +L  +FR +D +GDG++S  EL +  R +GA L        +   DSD DGF+   +F
Subjt:  QLSVIFRNHDGDGDGRLSTTELTAAFRYIGAFLPSYRALHALLHTDSDGDGFIGEKDF

Q39419 Polcalcin Bet v 41.2e-0537.88Show/hide
Query:  PRPKLSREQLSVIFRNHDGDGDGRLSTTELTAAFRYIGAFLPSYRALHALLHTDSDGDGFIGEKDF
        P+ K  RE+   IF+  D +GDG++S  EL  A + +G+  P     H +   D+DGDGFI  ++F
Subjt:  PRPKLSREQLSVIFRNHDGDGDGRLSTTELTAAFRYIGAFLPSYRALHALLHTDSDGDGFIGEKDF

Q6L4D4 Probable calcium-binding protein CML152.2e-0737.31Show/hide
Query:  QPRPKLSREQLSVIFRNHDGDGDGRLSTTELTAAFRYIGAFLPSYRALHALLHTDSDGDGFIGEKDF
        +PRP  + ++   +FR  D +GDGR+S  EL A FR +G  +        +   DSDGDG+I   +F
Subjt:  QPRPKLSREQLSVIFRNHDGDGDGRLSTTELTAAFRYIGAFLPSYRALHALLHTDSDGDGFIGEKDF

Q8L3R2 Probable calcium-binding protein CML417.0e-0637.7Show/hide
Query:  SREQLSVIFRNHDGDGDGRLSTTELTAAFRYIGAFLPSYRALHALLHTDSDGDGFIGEKDF
        S+E+L  +F + D DGDG++S  EL   F  +G ++    A  A+   D+D DG +G +DF
Subjt:  SREQLSVIFRNHDGDGDGRLSTTELTAAFRYIGAFLPSYRALHALLHTDSDGDGFIGEKDF

Q8RZB5 Probable calcium-binding protein CML102.0e-0537.1Show/hide
Query:  EQLSVIFRNHDGDGDGRLSTTELTAAFRYIGAFLPSYRALHALLHTDSDGDGFIGEKDFELL
        E++  +FR  D +GDGR+S +EL A F  +G           +   D+DGDGFI   +F  L
Subjt:  EQLSVIFRNHDGDGDGRLSTTELTAAFRYIGAFLPSYRALHALLHTDSDGDGFIGEKDFELL

Arabidopsis top hitse value%identityAlignment
AT1G76640.1 Calcium-binding EF-hand family protein1.0e-0434.43Show/hide
Query:  LSVIFRNHDGDGDGRLSTTELTAAFRYIGAFLPSYRALHALLHTDSDGDGFIGEKDFELLV
        L  +F   D + DGR+S  EL  +F+ +G  +    A  A+  +D DGDG +   +F LL+
Subjt:  LSVIFRNHDGDGDGRLSTTELTAAFRYIGAFLPSYRALHALLHTDSDGDGFIGEKDFELLV

AT1G76650.1 calmodulin-like 382.7e-0530.43Show/hide
Query:  QLSVIFRNHDGDGDGRLSTTELTAAFRYIGAFLPSYRALHALLHTDSDGDGFIGEKDFELLVNYAEKRK
        +L  +F   D + DGR+S  EL  +F  +G  L    A+ A+  +D+DGDG +  ++F  L+   ++ +
Subjt:  QLSVIFRNHDGDGDGRLSTTELTAAFRYIGAFLPSYRALHALLHTDSDGDGFIGEKDFELLVNYAEKRK

AT1G76650.3 calmodulin-like 382.7e-0530.43Show/hide
Query:  QLSVIFRNHDGDGDGRLSTTELTAAFRYIGAFLPSYRALHALLHTDSDGDGFIGEKDFELLVNYAEKRK
        +L  +F   D + DGR+S  EL  +F  +G  L    A+ A+  +D+DGDG +  ++F  L+   ++ +
Subjt:  QLSVIFRNHDGDGDGRLSTTELTAAFRYIGAFLPSYRALHALLHTDSDGDGFIGEKDFELLVNYAEKRK

AT3G50770.1 calmodulin-like 415.0e-0737.7Show/hide
Query:  SREQLSVIFRNHDGDGDGRLSTTELTAAFRYIGAFLPSYRALHALLHTDSDGDGFIGEKDF
        S+E+L  +F + D DGDG++S  EL   F  +G ++    A  A+   D+D DG +G +DF
Subjt:  SREQLSVIFRNHDGDGDGRLSTTELTAAFRYIGAFLPSYRALHALLHTDSDGDGFIGEKDF

AT4G03290.1 EF hand calcium-binding protein family4.7e-0531.03Show/hide
Query:  QLSVIFRNHDGDGDGRLSTTELTAAFRYIGAFLPSYRALHALLHTDSDGDGFIGEKDF
        +L+ +F+  D DGDG+++T EL  +F+ +G  +P       +   D +GDG +  ++F
Subjt:  QLSVIFRNHDGDGDGRLSTTELTAAFRYIGAFLPSYRALHALLHTDSDGDGFIGEKDF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAAGGAAAAGCAAAACGTACCAGCCCAGGCCGAAGCTATCAAGAGAGCAGCTAAGCGTAATCTTCCGAAACCACGACGGCGATGGCGACGGCCGTCTAAGCACCAC
CGAGCTCACTGCAGCTTTCAGGTACATCGGCGCATTTCTTCCGTCCTACAGAGCTCTCCACGCTCTCCTTCACACCGATTCCGATGGAGATGGATTCATCGGCGAGAAGG
ATTTCGAATTGCTCGTCAATTATGCCGAGAAACGCAAATACACCGTCATTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCAAGGAAAAGCAAAACGTACCAGCCCAGGCCGAAGCTATCAAGAGAGCAGCTAAGCGTAATCTTCCGAAACCACGACGGCGATGGCGACGGCCGTCTAAGCACCAC
CGAGCTCACTGCAGCTTTCAGGTACATCGGCGCATTTCTTCCGTCCTACAGAGCTCTCCACGCTCTCCTTCACACCGATTCCGATGGAGATGGATTCATCGGCGAGAAGG
ATTTCGAATTGCTCGTCAATTATGCCGAGAAACGCAAATACACCGTCATTTGA
Protein sequenceShow/hide protein sequence
MARKSKTYQPRPKLSREQLSVIFRNHDGDGDGRLSTTELTAAFRYIGAFLPSYRALHALLHTDSDGDGFIGEKDFELLVNYAEKRKYTVI