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Carg08828 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg08828
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionLSD1 zinc finger family protein
Genome locationCarg_Chr02:9020738..9021754
RNA-Seq ExpressionCarg08828
SyntenyCarg08828
Gene Ontology termsGO:0034052 - positive regulation of plant-type hypersensitive response (biological process)
GO:2000121 - regulation of removal of superoxide radicals (biological process)
GO:0005634 - nucleus (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003677 - DNA binding (molecular function)
InterPro domainsIPR005735 - Zinc finger, LSD1-type
IPR040319 - LSD1-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038592.1 protein LOL1 [Cucumis melo var. makuwa]7.0e-2169.66Show/hide
Query:  MAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEDVYKCSRSKSLTAKVMVNMVVPDSITAA--LHHSYHPPPCLINSTSGGSSHIHL
        MAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEDV KC+RSKS+ AKV+VN VV +S TAA  +  +     CL + T+GGSS   L
Subjt:  MAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEDVYKCSRSKSLTAKVMVNMVVPDSITAA--LHHSYHPPPCLINSTSGGSSHIHL

KAG7011533.1 Protein LOL1 [Cucurbita argyrosperma subsp. argyrosperma]2.4e-1343.85Show/hide
Query:  MAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALE---------------------------------------------------------------DV
        MAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALE                                                               D 
Subjt:  MAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALE---------------------------------------------------------------DV

Query:  YKCSRSKSLTAKVMVNMVVPDSITAALHHS
         KC RSKSL AKV+VNMVVP+  TAAL +S
Subjt:  YKCSRSKSLTAKVMVNMVVPDSITAALHHS

KAG7036182.1 Protein LOL1, partial [Cucurbita argyrosperma subsp. argyrosperma]3.0e-56100Show/hide
Query:  MAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEDVYKCSRSKSLTAKVMVNMVVPDSITAALHHSYHPPPCLINSTSGGSSHIHLYRAVFLRVNIKCR
        MAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEDVYKCSRSKSLTAKVMVNMVVPDSITAALHHSYHPPPCLINSTSGGSSHIHLYRAVFLRVNIKCR
Subjt:  MAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEDVYKCSRSKSLTAKVMVNMVVPDSITAALHHSYHPPPCLINSTSGGSSHIHLYRAVFLRVNIKCR

Query:  FFFPFIFTVLE
        FFFPFIFTVLE
Subjt:  FFFPFIFTVLE

KYP35984.1 hypothetical protein KK1_042921 [Cajanus cajan]2.7e-1292.5Show/hide
Query:  MAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEDVYKC
        MAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALED+  C
Subjt:  MAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEDVYKC

XP_038887481.1 protein LOL1 isoform X1 [Benincasa hispida]7.0e-2151.41Show/hide
Query:  MAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALE--------------------------------------DVYKCSRSKSLTAKVMVNMVVPDSITA
        MAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALE                                      DV +  RSKSL AKV+VNMVVP+S TA
Subjt:  MAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALE--------------------------------------DVYKCSRSKSLTAKVMVNMVVPDSITA

Query:  ALHH--SYHPPPCLINSTSGGSSHIHLYRAVFLRVNIKCRFF
        AL +        C    T     HI+LYRAVFLR+N KC FF
Subjt:  ALHH--SYHPPPCLINSTSGGSSHIHLYRAVFLRVNIKCRFF

TrEMBL top hitse value%identityAlignment
A0A151R086 Uncharacterized protein1.3e-1292.5Show/hide
Query:  MAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEDVYKC
        MAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALED+  C
Subjt:  MAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEDVYKC

A0A392QVC0 Protein LOL1 (Fragment)2.2e-1290.24Show/hide
Query:  MAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEDVYKCS
        MAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALE  Y C+
Subjt:  MAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEDVYKCS

A0A5A7T554 Protein LOL13.4e-2169.66Show/hide
Query:  MAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEDVYKCSRSKSLTAKVMVNMVVPDSITAA--LHHSYHPPPCLINSTSGGSSHIHL
        MAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEDV KC+RSKS+ AKV+VN VV +S TAA  +  +     CL + T+GGSS   L
Subjt:  MAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEDVYKCSRSKSLTAKVMVNMVVPDSITAA--LHHSYHPPPCLINSTSGGSSHIHL

A0A7J7CLY9 MND1-interacting protein 1-like4.9e-1292.5Show/hide
Query:  MAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEDVYKC
        MAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALED   C
Subjt:  MAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEDVYKC

K7TWY2 LOL11.9e-1163.79Show/hide
Query:  MAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALE----DVYKCSRSKSLTAKVMVNM
        MAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLA+E    D   C++ +    K+++++
Subjt:  MAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALE----DVYKCSRSKSLTAKVMVNM

SwissProt top hitse value%identityAlignment
P94077 Protein LSD16.0e-0768.75Show/hide
Query:  MAQLVCGGCHTLLMYIRGATSVQCSCCHTVNL
        MA ++CGGC T+LMY RGA+SV+CSCC T NL
Subjt:  MAQLVCGGCHTLLMYIRGATSVQCSCCHTVNL

Q0J7V9 Protein LSD13.3e-1397.14Show/hide
Query:  MAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALE
        MAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLA+E
Subjt:  MAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALE

Q2QMB3 Protein LOL24.6e-0775Show/hide
Query:  MAQLVCGGCHTLLMYIRGATSVQCSCCHTVNL
        +A L+CGGC TLLMY R ATSV+CSCC TVNL
Subjt:  MAQLVCGGCHTLLMYIRGATSVQCSCCHTVNL

Q6ASS2 Protein LOL31.7e-0671.88Show/hide
Query:  MAQLVCGGCHTLLMYIRGATSVQCSCCHTVNL
        MA L+CGGC TLLMY R A +V+CSCC TVNL
Subjt:  MAQLVCGGCHTLLMYIRGATSVQCSCCHTVNL

Q93ZB1 Protein LOL11.9e-13100Show/hide
Query:  MAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALE
        MAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALE
Subjt:  MAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALE

Arabidopsis top hitse value%identityAlignment
AT1G32540.1 lsd one like 11.4e-14100Show/hide
Query:  MAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALE
        MAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALE
Subjt:  MAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALE

AT1G32540.2 lsd one like 11.4e-14100Show/hide
Query:  MAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALE
        MAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALE
Subjt:  MAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALE

AT1G32540.3 lsd one like 11.4e-14100Show/hide
Query:  MAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALE
        MAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALE
Subjt:  MAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALE

AT4G20380.2 LSD1 zinc finger family protein4.3e-0868.75Show/hide
Query:  MAQLVCGGCHTLLMYIRGATSVQCSCCHTVNL
        MA ++CGGC T+LMY RGA+SV+CSCC T NL
Subjt:  MAQLVCGGCHTLLMYIRGATSVQCSCCHTVNL

AT4G20380.8 LSD1 zinc finger family protein1.5e-0860.53Show/hide
Query:  MAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEDVY
        MA ++CGGC T+LMY RGA+SV+CSCC T NL  E  +
Subjt:  MAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEDVY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCACAACTGGTGTGTGGAGGCTGCCATACTCTTCTCATGTACATCCGCGGTGCTACCAGCGTGCAATGTTCTTGTTGCCACACCGTCAACTTAGCTTTGGAAGATGT
CTACAAGTGCAGTCGATCAAAAAGCCTAACAGCTAAAGTTATGGTAAACATGGTTGTCCCCGACTCGATAACTGCAGCTTTGCATCATTCGTATCACCCTCCGCCATGTT
TGATCAACTCGACAAGCGGAGGTTCCTCTCATATTCACTTGTATAGAGCTGTATTTCTGCGCGTGAACATTAAATGTCGTTTTTTTTTTCCCTTCATCTTCACAGTGCTT
GAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCACAACTGGTGTGTGGAGGCTGCCATACTCTTCTCATGTACATCCGCGGTGCTACCAGCGTGCAATGTTCTTGTTGCCACACCGTCAACTTAGCTTTGGAAGATGT
CTACAAGTGCAGTCGATCAAAAAGCCTAACAGCTAAAGTTATGGTAAACATGGTTGTCCCCGACTCGATAACTGCAGCTTTGCATCATTCGTATCACCCTCCGCCATGTT
TGATCAACTCGACAAGCGGAGGTTCCTCTCATATTCACTTGTATAGAGCTGTATTTCTGCGCGTGAACATTAAATGTCGTTTTTTTTTTCCCTTCATCTTCACAGTGCTT
GAATGATATTTGCATGGTTTAAGTAGTTTTGGGCAACATTTTATACTGTGATGAGTGTAATATAAGTGATGGATAAAGATGGAGTTTGGTTTCTTTGTGAACTGCAGAAG
AGAGTTAATATGAGA
Protein sequenceShow/hide protein sequence
MAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEDVYKCSRSKSLTAKVMVNMVVPDSITAALHHSYHPPPCLINSTSGGSSHIHLYRAVFLRVNIKCRFFFPFIFTVL
E