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Carg08853 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg08853
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionRibosome maturation factor
Genome locationCarg_Chr02:9114071..9114768
RNA-Seq ExpressionCarg08853
SyntenyCarg08853
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6606266.1 hypothetical protein SDJN03_03583, partial [Cucurbita argyrosperma subsp. sororia]4.5e-82100Show/hide
Query:  MQRQSLGSPVSKLHGHGAGAKSDAVPADDQKRNKHSPSSPLILNYDGQDDEKASKSFRFSFPTPSPQRQEKFVHAIPILTIICFLILYIFSHSPSQSDLA
        MQRQSLGSPVSKLHGHGAGAKSDAVPADDQKRNKHSPSSPLILNYDGQDDEKASKSFRFSFPTPSPQRQEKFVHAIPILTIICFLILYIFSHSPSQSDLA
Subjt:  MQRQSLGSPVSKLHGHGAGAKSDAVPADDQKRNKHSPSSPLILNYDGQDDEKASKSFRFSFPTPSPQRQEKFVHAIPILTIICFLILYIFSHSPSQSDLA

Query:  QFHGFKRPSEHLEIKAEGDELIVPKKGNILAIQSLRNLKEIEKSHSLRSRTPRKLGDF
        QFHGFKRPSEHLEIKAEGDELIVPKKGNILAIQSLRNLKEIEKSHSLRSRTPRKLGDF
Subjt:  QFHGFKRPSEHLEIKAEGDELIVPKKGNILAIQSLRNLKEIEKSHSLRSRTPRKLGDF
XP_004136199.1 uncharacterized protein LOC101212292 isoform X2 [Cucumis sativus]1.5e-6986.71Show/hide
Query:  MQRQSLGSPVSKLHGHGAGAKSDAVPADDQKRNKHSPSSPLILNYDGQDDEKASKSFRFSFPTPSPQRQEKFVHAIPILTIICFLILYIFSHSPSQSDLA
        MQRQSLGSPVSKLHGHGAGAKSD  PADDQKR KHSPSS  ILNY GQDD+K+SKSFRFSFP+PSP RQEK VHAIPILTIICFLILYIFSHSPSQSDLA
Subjt:  MQRQSLGSPVSKLHGHGAGAKSDAVPADDQKRNKHSPSSPLILNYDGQDDEKASKSFRFSFPTPSPQRQEKFVHAIPILTIICFLILYIFSHSPSQSDLA

Query:  QFHGFKRPSEHLEIKAEGDELIVPKKGNILAIQSLRNLKEIEKSHSLRSRTPRKLGDF
        QFHGFK PS+ LEIKA+GDELI+PKKGNILAIQS RNLKEIEKS+SL+SR PRKL DF
Subjt:  QFHGFKRPSEHLEIKAEGDELIVPKKGNILAIQSLRNLKEIEKSHSLRSRTPRKLGDF
XP_008466005.1 PREDICTED: uncharacterized protein LOC103503567 isoform X2 [Cucumis melo]1.3e-6886.79Show/hide
Query:  MQRQSLGSPVSKLHGHGAGAKSDAVPADDQKRNKHSPSSPLILNYDGQDDEKASKSFRFSFPTPSPQRQEKFVHAIPILTIICFLILYIFSHSPSQSDLA
        MQRQSLGSPVSKLHGHGAGAKSD  PADDQKR KHSPSS  ILNY GQDD+K+SKSFRFSFP+PSP RQEK VHAIPILTIICFLILYIFSHSPSQSDLA
Subjt:  MQRQSLGSPVSKLHGHGAGAKSDAVPADDQKRNKHSPSSPLILNYDGQDDEKASKSFRFSFPTPSPQRQEKFVHAIPILTIICFLILYIFSHSPSQSDLA

Query:  QFHGFKRPSEHLEIKA-EGDELIVPKKGNILAIQSLRNLKEIEKSHSLRSRTPRKLGDF
        QFHGFKRPS+ LEIKA +G ELI+PKKGNILAIQS RNLKEIEKSHSL+SR PRKL DF
Subjt:  QFHGFKRPSEHLEIKA-EGDELIVPKKGNILAIQSLRNLKEIEKSHSLRSRTPRKLGDF
XP_022930990.1 uncharacterized protein LOC111437318 [Cucurbita moschata]1.3e-8199.37Show/hide
Query:  MQRQSLGSPVSKLHGHGAGAKSDAVPADDQKRNKHSPSSPLILNYDGQDDEKASKSFRFSFPTPSPQRQEKFVHAIPILTIICFLILYIFSHSPSQSDLA
        MQRQSLGSPVSKLHGHGAGAKSDAVPADDQKRNKHSPSSPLILNYDGQDDEKASKSFRFSFPTPSPQRQEKFVHAIPILTI CFLILYIFSHSPSQSDLA
Subjt:  MQRQSLGSPVSKLHGHGAGAKSDAVPADDQKRNKHSPSSPLILNYDGQDDEKASKSFRFSFPTPSPQRQEKFVHAIPILTIICFLILYIFSHSPSQSDLA

Query:  QFHGFKRPSEHLEIKAEGDELIVPKKGNILAIQSLRNLKEIEKSHSLRSRTPRKLGDF
        QFHGFKRPSEHLEIKAEGDELIVPKKGNILAIQSLRNLKEIEKSHSLRSRTPRKLGDF
Subjt:  QFHGFKRPSEHLEIKAEGDELIVPKKGNILAIQSLRNLKEIEKSHSLRSRTPRKLGDF
XP_022995482.1 uncharacterized protein LOC111491006 [Cucurbita maxima]1.6e-7997.47Show/hide
Query:  MQRQSLGSPVSKLHGHGAGAKSDAVPADDQKRNKHSPSSPLILNYDGQDDEKASKSFRFSFPTPSPQRQEKFVHAIPILTIICFLILYIFSHSPSQSDLA
        MQRQSLGSPVSKLHGHGAGAKSDAVPADDQKRNKHSPSS LILNYDGQDD+KASKSFRFSFPTPSPQRQEKFVHAIPILTIICFLILYIFSHSPSQSDLA
Subjt:  MQRQSLGSPVSKLHGHGAGAKSDAVPADDQKRNKHSPSSPLILNYDGQDDEKASKSFRFSFPTPSPQRQEKFVHAIPILTIICFLILYIFSHSPSQSDLA

Query:  QFHGFKRPSEHLEIKAEGDELIVPKKGNILAIQSLRNLKEIEKSHSLRSRTPRKLGDF
        QFHGFKRPSEHLEIKAEGDELIVPKKGNILAIQSLRNLKEIEKSHSLRSR PRKL DF
Subjt:  QFHGFKRPSEHLEIKAEGDELIVPKKGNILAIQSLRNLKEIEKSHSLRSRTPRKLGDF
TrEMBL top hitse value%identityAlignment
A0A0A0LE94 Uncharacterized protein7.4e-7086.71Show/hide
Query:  MQRQSLGSPVSKLHGHGAGAKSDAVPADDQKRNKHSPSSPLILNYDGQDDEKASKSFRFSFPTPSPQRQEKFVHAIPILTIICFLILYIFSHSPSQSDLA
        MQRQSLGSPVSKLHGHGAGAKSD  PADDQKR KHSPSS  ILNY GQDD+K+SKSFRFSFP+PSP RQEK VHAIPILTIICFLILYIFSHSPSQSDLA
Subjt:  MQRQSLGSPVSKLHGHGAGAKSDAVPADDQKRNKHSPSSPLILNYDGQDDEKASKSFRFSFPTPSPQRQEKFVHAIPILTIICFLILYIFSHSPSQSDLA

Query:  QFHGFKRPSEHLEIKAEGDELIVPKKGNILAIQSLRNLKEIEKSHSLRSRTPRKLGDF
        QFHGFK PS+ LEIKA+GDELI+PKKGNILAIQS RNLKEIEKS+SL+SR PRKL DF
Subjt:  QFHGFKRPSEHLEIKAEGDELIVPKKGNILAIQSLRNLKEIEKSHSLRSRTPRKLGDF
A0A1S3CQJ2 uncharacterized protein LOC103503567 isoform X26.2e-6986.79Show/hide
Query:  MQRQSLGSPVSKLHGHGAGAKSDAVPADDQKRNKHSPSSPLILNYDGQDDEKASKSFRFSFPTPSPQRQEKFVHAIPILTIICFLILYIFSHSPSQSDLA
        MQRQSLGSPVSKLHGHGAGAKSD  PADDQKR KHSPSS  ILNY GQDD+K+SKSFRFSFP+PSP RQEK VHAIPILTIICFLILYIFSHSPSQSDLA
Subjt:  MQRQSLGSPVSKLHGHGAGAKSDAVPADDQKRNKHSPSSPLILNYDGQDDEKASKSFRFSFPTPSPQRQEKFVHAIPILTIICFLILYIFSHSPSQSDLA

Query:  QFHGFKRPSEHLEIKA-EGDELIVPKKGNILAIQSLRNLKEIEKSHSLRSRTPRKLGDF
        QFHGFKRPS+ LEIKA +G ELI+PKKGNILAIQS RNLKEIEKSHSL+SR PRKL DF
Subjt:  QFHGFKRPSEHLEIKA-EGDELIVPKKGNILAIQSLRNLKEIEKSHSLRSRTPRKLGDF
A0A5A7T6T2 Uncharacterized protein6.2e-6986.79Show/hide
Query:  MQRQSLGSPVSKLHGHGAGAKSDAVPADDQKRNKHSPSSPLILNYDGQDDEKASKSFRFSFPTPSPQRQEKFVHAIPILTIICFLILYIFSHSPSQSDLA
        MQRQSLGSPVSKLHGHGAGAKSD  PADDQKR KHSPSS  ILNY GQDD+K+SKSFRFSFP+PSP RQEK VHAIPILTIICFLILYIFSHSPSQSDLA
Subjt:  MQRQSLGSPVSKLHGHGAGAKSDAVPADDQKRNKHSPSSPLILNYDGQDDEKASKSFRFSFPTPSPQRQEKFVHAIPILTIICFLILYIFSHSPSQSDLA

Query:  QFHGFKRPSEHLEIKA-EGDELIVPKKGNILAIQSLRNLKEIEKSHSLRSRTPRKLGDF
        QFHGFKRPS+ LEIKA +G ELI+PKKGNILAIQS RNLKEIEKSHSL+SR PRKL DF
Subjt:  QFHGFKRPSEHLEIKA-EGDELIVPKKGNILAIQSLRNLKEIEKSHSLRSRTPRKLGDF
A0A6J1EYA9 uncharacterized protein LOC1114373186.4e-8299.37Show/hide
Query:  MQRQSLGSPVSKLHGHGAGAKSDAVPADDQKRNKHSPSSPLILNYDGQDDEKASKSFRFSFPTPSPQRQEKFVHAIPILTIICFLILYIFSHSPSQSDLA
        MQRQSLGSPVSKLHGHGAGAKSDAVPADDQKRNKHSPSSPLILNYDGQDDEKASKSFRFSFPTPSPQRQEKFVHAIPILTI CFLILYIFSHSPSQSDLA
Subjt:  MQRQSLGSPVSKLHGHGAGAKSDAVPADDQKRNKHSPSSPLILNYDGQDDEKASKSFRFSFPTPSPQRQEKFVHAIPILTIICFLILYIFSHSPSQSDLA

Query:  QFHGFKRPSEHLEIKAEGDELIVPKKGNILAIQSLRNLKEIEKSHSLRSRTPRKLGDF
        QFHGFKRPSEHLEIKAEGDELIVPKKGNILAIQSLRNLKEIEKSHSLRSRTPRKLGDF
Subjt:  QFHGFKRPSEHLEIKAEGDELIVPKKGNILAIQSLRNLKEIEKSHSLRSRTPRKLGDF
A0A6J1JZ13 uncharacterized protein LOC1114910067.8e-8097.47Show/hide
Query:  MQRQSLGSPVSKLHGHGAGAKSDAVPADDQKRNKHSPSSPLILNYDGQDDEKASKSFRFSFPTPSPQRQEKFVHAIPILTIICFLILYIFSHSPSQSDLA
        MQRQSLGSPVSKLHGHGAGAKSDAVPADDQKRNKHSPSS LILNYDGQDD+KASKSFRFSFPTPSPQRQEKFVHAIPILTIICFLILYIFSHSPSQSDLA
Subjt:  MQRQSLGSPVSKLHGHGAGAKSDAVPADDQKRNKHSPSSPLILNYDGQDDEKASKSFRFSFPTPSPQRQEKFVHAIPILTIICFLILYIFSHSPSQSDLA

Query:  QFHGFKRPSEHLEIKAEGDELIVPKKGNILAIQSLRNLKEIEKSHSLRSRTPRKLGDF
        QFHGFKRPSEHLEIKAEGDELIVPKKGNILAIQSLRNLKEIEKSHSLRSR PRKL DF
Subjt:  QFHGFKRPSEHLEIKAEGDELIVPKKGNILAIQSLRNLKEIEKSHSLRSRTPRKLGDF
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G35470.1 unknown protein3.2e-2547.62Show/hide
Query:  MQRQSLGSPVSKLHGHGAGAKSDAVPADDQKRNKHSP-SSPLILNYDGQD--DEKASKSFRFSFP-TPSPQRQEKFVHAIPILTIICFLILYIFSHSPSQ
        MQR SL S  SKLH +G G K D    DD K    SP SS   ++YD  +  D K  +      P   + Q+QEK VH IPILT+ICF+ILY+ S++PSQ
Subjt:  MQRQSLGSPVSKLHGHGAGAKSDAVPADDQKRNKHSP-SSPLILNYDGQD--DEKASKSFRFSFP-TPSPQRQEKFVHAIPILTIICFLILYIFSHSPSQ

Query:  SDLAQFHGFKRPSEHLEIKAE-GDELIVPKKGNILAIQ-SLRNLKEIE----KSHSLRSRTPRKLGDF
        SDLAQF+GF RPS+HLE   E GDE+    + + L+I+ S+RNL+E E    KS   R  + RK  DF
Subjt:  SDLAQFHGFKRPSEHLEIKAE-GDELIVPKKGNILAIQ-SLRNLKEIE----KSHSLRSRTPRKLGDF

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAAGGCAATCTCTAGGTTCACCAGTTTCCAAGCTCCACGGCCATGGCGCCGGAGCCAAATCGGATGCAGTTCCGGCCGACGATCAGAAGCGCAACAAGCACTCTCC
ATCTTCTCCTTTAATTCTCAACTACGACGGACAAGATGACGAGAAAGCCTCTAAATCCTTCCGATTCTCATTTCCAACGCCTTCTCCTCAGCGGCAGGAGAAGTTCGTTC
ATGCTATCCCTATCCTCACCATTATCTGCTTCCTCATCCTTTACATCTTCTCGCACAGTCCTTCGCAGTCAGATTTGGCTCAGTTTCATGGATTCAAGCGTCCTTCAGAA
CATTTAGAAATCAAAGCCGAAGGAGACGAACTTATCGTACCGAAGAAAGGCAACATCCTAGCGATTCAAAGTCTCCGTAACCTAAAAGAGATCGAAAAATCACATTCTCT
GAGATCTCGCACTCCGAGGAAACTCGGCGATTTCTAA
mRNA sequenceShow/hide mRNA sequence
TCTCTCTACTTCTCTCTGTCTCTCTCTACGATGCAAAGGCAATCTCTAGGTTCACCAGTTTCCAAGCTCCACGGCCATGGCGCCGGAGCCAAATCGGATGCAGTTCCGGC
CGACGATCAGAAGCGCAACAAGCACTCTCCATCTTCTCCTTTAATTCTCAACTACGACGGACAAGATGACGAGAAAGCCTCTAAATCCTTCCGATTCTCATTTCCAACGC
CTTCTCCTCAGCGGCAGGAGAAGTTCGTTCATGCTATCCCTATCCTCACCATTATCTGCTTCCTCATCCTTTACATCTTCTCGCACAGTCCTTCGCAGTCAGATTTGGCT
CAGTTTCATGGATTCAAGCGTCCTTCAGAACATTTAGAAATCAAAGCCGAAGGAGACGAACTTATCGTACCGAAGAAAGGCAACATCCTAGCGATTCAAAGTCTCCGTAA
CCTAAAAGAGATCGAAAAATCACATTCTCTGAGATCTCGCACTCCGAGGAAACTCGGCGATTTCTAA
Protein sequenceShow/hide protein sequence
MQRQSLGSPVSKLHGHGAGAKSDAVPADDQKRNKHSPSSPLILNYDGQDDEKASKSFRFSFPTPSPQRQEKFVHAIPILTIICFLILYIFSHSPSQSDLAQFHGFKRPSE
HLEIKAEGDELIVPKKGNILAIQSLRNLKEIEKSHSLRSRTPRKLGDF