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Carg08897 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg08897
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionAvrRpt-cleavage domain-containing protein
Genome locationCarg_Chr02:9360738..9363411
RNA-Seq ExpressionCarg08897
SyntenyCarg08897
Gene Ontology termsNA
InterPro domainsIPR008700 - RIN4, pathogenic type III effector avirulence factor Avr cleavage site
IPR040387 - RPM1-interacting protein 4/NOI4


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6606311.1 RPM1-interacting protein 4, partial [Cucurbita argyrosperma subsp. sororia]2.4e-2898.46Show/hide
Query:  MADKEVAVPKFGEWNDRDATPPDNYTAIFTKVREERQDQGARTPTLPQNSNIPDNQNDEQNQKVC
        MADKEVAVPKFGEWNDRDATPPDNYTAIFTKVREERQDQGARTPTLPQNSNIPDNQNDEQNQK C
Subjt:  MADKEVAVPKFGEWNDRDATPPDNYTAIFTKVREERQDQGARTPTLPQNSNIPDNQNDEQNQKVC

KAG7036250.1 hypothetical protein SDJN02_03052 [Cucurbita argyrosperma subsp. argyrosperma]2.7e-51100Show/hide
Query:  MADKEVAVPKFGEWNDRDATPPDNYTAIFTKVREERQDQGARTPTLPQNSNIPDNQNDEQNQKVCSSMTKKCLFAQHNRTRVDSSPIGQQIGEGVGENRL
        MADKEVAVPKFGEWNDRDATPPDNYTAIFTKVREERQDQGARTPTLPQNSNIPDNQNDEQNQKVCSSMTKKCLFAQHNRTRVDSSPIGQQIGEGVGENRL
Subjt:  MADKEVAVPKFGEWNDRDATPPDNYTAIFTKVREERQDQGARTPTLPQNSNIPDNQNDEQNQKVCSSMTKKCLFAQHNRTRVDSSPIGQQIGEGVGENRL

Query:  C
        C
Subjt:  C

XP_015086553.1 RPM1-interacting protein 4 isoform X1 [Solanum pennellii]3.8e-0542.19Show/hide
Query:  ADKEVAVPKFGEWNDRDATPPDNYTAIFTKVREERQDQGARTPTLPQNSNIPDNQNDEQNQKVC
        +D+  AVP+FGEW++ D    DNYT IF KVREE+Q   + TP+   N+    N  ++Q +  C
Subjt:  ADKEVAVPKFGEWNDRDATPPDNYTAIFTKVREERQDQGARTPTLPQNSNIPDNQNDEQNQKVC

XP_022887205.1 RPM1-interacting protein 4-like [Olea europaea var. sylvestris]9.9e-0647.69Show/hide
Query:  DKEVAVPKFGEWNDRDATPPDNYTAIFTKVREERQDQGARTPTLPQNSNIPDNQN--DEQNQKVC
        D   AVPKFGEW+D D      Y+ IFTKVREERQ  G R P +P  ++  + Q+    +NQK C
Subjt:  DKEVAVPKFGEWNDRDATPPDNYTAIFTKVREERQDQGARTPTLPQNSNIPDNQN--DEQNQKVC

XP_038888923.1 RPM1-interacting protein 4-like [Benincasa hispida]5.4e-1262.12Show/hide
Query:  MADKEVAVPKFGEWNDRDATPPDNYTAIFTKVREERQDQGARTPTLPQN-SNIPDNQNDEQNQKVC
        MAD E  VPKFGEW+DRDA  P+NYTAIF KVRE RQ+ G R  T P++ +N  +NQN E NQK C
Subjt:  MADKEVAVPKFGEWNDRDATPPDNYTAIFTKVREERQDQGARTPTLPQN-SNIPDNQNDEQNQKVC

TrEMBL top hitse value%identityAlignment
A0A0A0L950 AvrRpt-cleavage domain-containing protein2.9e-1166.15Show/hide
Query:  MADKEVAVPKFGEWNDRDATPPDNYTAIFTKVREERQDQGAR-TPTLPQNSNIPDNQNDEQNQKV
        MAD E AVPKFGEW+D DA  P+NYTAIF KVREERQDQ  R TPT   +S   ++QN EQNQK+
Subjt:  MADKEVAVPKFGEWNDRDATPPDNYTAIFTKVREERQDQGAR-TPTLPQNSNIPDNQNDEQNQKV

A0A6A6K948 AvrRpt-cleavage domain-containing protein2.4e-0544.83Show/hide
Query:  MADKEVAVPKFGEWNDRDATPPDNYTAIFTKVREERQDQGARTPTLPQNSNIPDNQND
        M DK  AVPKFGEW++ +    D YT IF KVREERQ +  + P +P  S++ + + +
Subjt:  MADKEVAVPKFGEWNDRDATPPDNYTAIFTKVREERQDQGARTPTLPQNSNIPDNQND

A0A6N2AQE8 AvrRpt-cleavage domain-containing protein1.8e-0542.19Show/hide
Query:  ADKEVAVPKFGEWNDRDATPPDNYTAIFTKVREERQDQGARTPTLPQNSNIPDNQNDEQNQKVC
        +D+  AVP+FGEW++ D    DNYT IF KVREE+Q   + TP+   N+    N  ++Q +  C
Subjt:  ADKEVAVPKFGEWNDRDATPPDNYTAIFTKVREERQDQGARTPTLPQNSNIPDNQNDEQNQKVC

M1CPC9 RIN4c protein3.1e-0542.19Show/hide
Query:  ADKEVAVPKFGEWNDRDATPPDNYTAIFTKVREERQDQGARTPTLPQNSNIPDNQNDEQNQKVC
        +D+  AVP+FGEW++ D    DNYT IF KVREE+Q   + TP+   N+    N  ++Q +  C
Subjt:  ADKEVAVPKFGEWNDRDATPPDNYTAIFTKVREERQDQGARTPTLPQNSNIPDNQNDEQNQKVC

M1CPD0 RIN4c protein3.1e-0542.19Show/hide
Query:  ADKEVAVPKFGEWNDRDATPPDNYTAIFTKVREERQDQGARTPTLPQNSNIPDNQNDEQNQKVC
        +D+  AVP+FGEW++ D    DNYT IF KVREE+Q   + TP+   N+    N  ++Q +  C
Subjt:  ADKEVAVPKFGEWNDRDATPPDNYTAIFTKVREERQDQGARTPTLPQNSNIPDNQNDEQNQKVC

SwissProt top hitse value%identityAlignment
Q8GYN5 RPM1-interacting protein 41.5e-0444.83Show/hide
Query:  DKEVAVPKFGEWNDRDATPPDNYTAIFTKVREERQ-----DQGARTPTLPQNSNIPDN
        +K   VPKFG+W++ + +  D YT IF KVREER         +RTPT  Q+S  P+N
Subjt:  DKEVAVPKFGEWNDRDATPPDNYTAIFTKVREERQ-----DQGARTPTLPQNSNIPDN

Arabidopsis top hitse value%identityAlignment
AT2G04410.1 RPM1-interacting protein 4 (RIN4) family protein2.6e-0445Show/hide
Query:  MADKEVAVPKFGEWNDRDATPPDNYTAIFTKVREERQDQG
        MADK   +PKFGEW+  D +  + +T IF K R E++  G
Subjt:  MADKEVAVPKFGEWNDRDATPPDNYTAIFTKVREERQDQG

AT3G25070.1 RPM1 interacting protein 41.1e-0544.83Show/hide
Query:  DKEVAVPKFGEWNDRDATPPDNYTAIFTKVREERQ-----DQGARTPTLPQNSNIPDN
        +K   VPKFG+W++ + +  D YT IF KVREER         +RTPT  Q+S  P+N
Subjt:  DKEVAVPKFGEWNDRDATPPDNYTAIFTKVREERQ-----DQGARTPTLPQNSNIPDN

AT5G55850.1 RPM1-interacting protein 4 (RIN4) family protein4.4e-0442.5Show/hide
Query:  MADKEVAVPKFGEWNDRDATPPDNYTAIFTKVREERQDQG
        M+DK   +PKFGEW+  D    + +T IF K R+E++  G
Subjt:  MADKEVAVPKFGEWNDRDATPPDNYTAIFTKVREERQDQG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGACAAAGAAGTTGCGGTTCCAAAATTTGGTGAATGGAACGACAGGGACGCCACACCGCCAGACAACTACACAGCTATTTTCACCAAGGTGCGGGAAGAGAGACA
AGACCAGGGAGCAAGGACGCCGACGCTGCCACAGAACAGTAACATCCCAGATAACCAAAATGATGAACAAAATCAGAAGGTTTGTAGTTCTATGACGAAGAAATGCCTAT
TTGCTCAACATAATAGGACTCGTGTGGATTCGTCCCCAATAGGGCAACAAATAGGGGAAGGAGTAGGAGAAAATCGTCTTTGTTAG
mRNA sequenceShow/hide mRNA sequence
ATTTTCTGCTTTATTATTAACAATGGAGGTTCCTTCATCACGAAGCCAATTCTCTCTCTCTTTCTCTCTCTAGATTCATCGCTTCCGTATTCTCCTCTTCTTCCTCGGAT
TCCGGCGATCCTCTTCGCCGTGATTTCTCGTCGGAACTCGAGTCTGCTCGCAGTCCGGCAGTTTTTTCCCATTTCGAAGTAGTTCCCGCCGCCGCGCACGTCTGACTCCG
GTGGATAAACCACCATGGCTGACAAAGAAGTTGCGGTTCCAAAATTTGGTGAATGGAACGACAGGGACGCCACACCGCCAGACAACTACACAGCTATTTTCACCAAGGTG
CGGGAAGAGAGACAAGACCAGGGAGCAAGGACGCCGACGCTGCCACAGAACAGTAACATCCCAGATAACCAAAATGATGAACAAAATCAGAAGGTTTGTAGTTCTATGAC
GAAGAAATGCCTATTTGCTCAACATAATAGGACTCGTGTGGATTCGTCCCCAATAGGGCAACAAATAGGGGAAGGAGTAGGAGAAAATCGTCTTTGTTAG
Protein sequenceShow/hide protein sequence
MADKEVAVPKFGEWNDRDATPPDNYTAIFTKVREERQDQGARTPTLPQNSNIPDNQNDEQNQKVCSSMTKKCLFAQHNRTRVDSSPIGQQIGEGVGENRLC