CuGenDBv2

Gene ID	Carg08916
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Transcription initiation factor IIF subunit alpha
Genome location	Carg_Chr02:9447334..9451461
RNA-Seq Expression	Carg08916
Synteny	Carg08916
Gene Ontology terms	GO:0006367 - transcription initiation from RNA polymerase II promoter (biological process) GO:0006413 - translational initiation (biological process) GO:0032968 - positive regulation of transcription elongation from RNA polymerase II promoter (biological process) GO:0005674 - transcription factor TFIIF complex (cellular component) GO:0001096 - TFIIF-class transcription factor complex binding (molecular function) GO:0003677 - DNA binding (molecular function) GO:0003743 - translation initiation factor activity (molecular function) GO:0008168 - methyltransferase activity (molecular function) GO:0016251 - RNA polymerase II general transcription initiation factor activity (molecular function)
InterPro domains	IPR008851 - Transcription initiation factor IIF, alpha subunit IPR036388 - Winged helix-like DNA-binding domain superfamily IPR036390 - Winged helix DNA-binding domain superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6606328.1 Transcription initiation factor IIF subunit alpha, partial [Cucurbita argyrosperma subsp. sororia]

7.5e-181

99.44

Show/hide

Query:  MKNRKKTADGYERWMMKAASNGPAAFGEVEKFDDKDSVGATGRGRRKPTSDENEGNVSDRGEEDEEEEAARKNRLGLNKKGGGDDDDEEGPRGGDHDLDD
        MKNRKKTADGYERWMMKAASNGPAAFGEVEKFDDKDSVGATGRGRRKPTSDENEGNVSDRGEEDEEEEAARKNRLGLNKKGGGDDDDEEG RGGDHDLDD
Subjt:  MKNRKKTADGYERWMMKAASNGPAAFGEVEKFDDKDSVGATGRGRRKPTSDENEGNVSDRGEEDEEEEAARKNRLGLNKKGGGDDDDEEGPRGGDHDLDD

Query:  DDIKKGDDWEHEEIFTDDDETTAPDREEREDLAPEVPAPPEIKQDEEDEDEENEGEGGLSKSGKELKKLLRRTGGLNDSDGEEEDDDDDDAEEESGGTPV
        DDIKKGDDWEHEEIFTDDDETTAPDREEREDLAPEVPAPPEIKQDEEDEDEENEGEGGLSKSGKELKKLLRRTGGLNDSDGEEE+DDDDDAEEESGGTPV
Subjt:  DDIKKGDDWEHEEIFTDDDETTAPDREEREDLAPEVPAPPEIKQDEEDEDEENEGEGGLSKSGKELKKLLRRTGGLNDSDGEEEDDDDDDAEEESGGTPV

Query:  APSKQKDAVKEEAAANSPSKPAPSGSAKGTPSTAKTAKGKRKNGEDVKPSSAPPKKMKTETESKSTDEGVSTSRSTASKGAAASVKTEPASASGPVTEEE
        APSKQKDAVKEEAAANSPSKPAPSGSAKGTPSTAKTAKGKRKNGEDVKPSSAPPKKMKTETESKSTDEGVSTSRSTASKGAAASVKTEPASASGPVTEEE
Subjt:  APSKQKDAVKEEAAANSPSKPAPSGSAKGTPSTAKTAKGKRKNGEDVKPSSAPPKKMKTETESKSTDEGVSTSRSTASKGAAASVKTEPASASGPVTEEE

Query:  IRAVLRQRTPVTTQDLVAKFKARLRSHEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED
        IRAVLRQRTPVTTQDLVAKFKARLRSHEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED
Subjt:  IRAVLRQRTPVTTQDLVAKFKARLRSHEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED

KAG7036268.1 Transcription initiation factor IIF subunit alpha [Cucurbita argyrosperma subsp. argyrosperma]

1.8e-182

100

Show/hide

Query:  MKNRKKTADGYERWMMKAASNGPAAFGEVEKFDDKDSVGATGRGRRKPTSDENEGNVSDRGEEDEEEEAARKNRLGLNKKGGGDDDDEEGPRGGDHDLDD
        MKNRKKTADGYERWMMKAASNGPAAFGEVEKFDDKDSVGATGRGRRKPTSDENEGNVSDRGEEDEEEEAARKNRLGLNKKGGGDDDDEEGPRGGDHDLDD
Subjt:  MKNRKKTADGYERWMMKAASNGPAAFGEVEKFDDKDSVGATGRGRRKPTSDENEGNVSDRGEEDEEEEAARKNRLGLNKKGGGDDDDEEGPRGGDHDLDD

Query:  DDIKKGDDWEHEEIFTDDDETTAPDREEREDLAPEVPAPPEIKQDEEDEDEENEGEGGLSKSGKELKKLLRRTGGLNDSDGEEEDDDDDDAEEESGGTPV
        DDIKKGDDWEHEEIFTDDDETTAPDREEREDLAPEVPAPPEIKQDEEDEDEENEGEGGLSKSGKELKKLLRRTGGLNDSDGEEEDDDDDDAEEESGGTPV
Subjt:  DDIKKGDDWEHEEIFTDDDETTAPDREEREDLAPEVPAPPEIKQDEEDEDEENEGEGGLSKSGKELKKLLRRTGGLNDSDGEEEDDDDDDAEEESGGTPV

Query:  APSKQKDAVKEEAAANSPSKPAPSGSAKGTPSTAKTAKGKRKNGEDVKPSSAPPKKMKTETESKSTDEGVSTSRSTASKGAAASVKTEPASASGPVTEEE
        APSKQKDAVKEEAAANSPSKPAPSGSAKGTPSTAKTAKGKRKNGEDVKPSSAPPKKMKTETESKSTDEGVSTSRSTASKGAAASVKTEPASASGPVTEEE
Subjt:  APSKQKDAVKEEAAANSPSKPAPSGSAKGTPSTAKTAKGKRKNGEDVKPSSAPPKKMKTETESKSTDEGVSTSRSTASKGAAASVKTEPASASGPVTEEE

Query:  IRAVLRQRTPVTTQDLVAKFKARLRSHEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED
        IRAVLRQRTPVTTQDLVAKFKARLRSHEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED
Subjt:  IRAVLRQRTPVTTQDLVAKFKARLRSHEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED

XP_022931161.1 transcription initiation factor IIF subunit alpha-like isoform X1 [Cucurbita moschata]

2.0e-181

99.44

Show/hide

Query:  MKNRKKTADGYERWMMKAASNGPAAFGEVEKFDDKDSVGATGRGRRKPTSDENEGNVSDRGEEDEEEEAARKNRLGLNKKGGGDDDDEEGPRGGDHDLDD
        MKNRKKTADGYERWMMKAASNGPAAFGEVEKFDDKDSVGATGRGRRKPTSDENEGNVSDRGEEDEEEEAARKNRLGLNKKGGGDDDDEEGPRGG+HDLDD
Subjt:  MKNRKKTADGYERWMMKAASNGPAAFGEVEKFDDKDSVGATGRGRRKPTSDENEGNVSDRGEEDEEEEAARKNRLGLNKKGGGDDDDEEGPRGGDHDLDD

Query:  DDIKKGDDWEHEEIFTDDDETTAPDREEREDLAPEVPAPPEIKQDEEDEDEENEGEGGLSKSGKELKKLLRRTGGLNDSDGEEEDDDDDDAEEESGGTPV
        DDI+KGDDWEHEEIFTDDDETTAPDREEREDLAPEVPAPPEIKQDEEDEDEENEGEGGLSKSGKELKKLLRRTGGLNDSDGEEEDDDDDDAEEESGGTPV
Subjt:  DDIKKGDDWEHEEIFTDDDETTAPDREEREDLAPEVPAPPEIKQDEEDEDEENEGEGGLSKSGKELKKLLRRTGGLNDSDGEEEDDDDDDAEEESGGTPV

Query:  APSKQKDAVKEEAAANSPSKPAPSGSAKGTPSTAKTAKGKRKNGEDVKPSSAPPKKMKTETESKSTDEGVSTSRSTASKGAAASVKTEPASASGPVTEEE
        APSKQKDAVKEEAAANSPSKPAPSGSAKGTPSTAKTAKGKRKNGEDVKPSSAPPKKMKTETESKSTDEGVSTSRSTASKGAAASVKTEPASASGPVTEEE
Subjt:  APSKQKDAVKEEAAANSPSKPAPSGSAKGTPSTAKTAKGKRKNGEDVKPSSAPPKKMKTETESKSTDEGVSTSRSTASKGAAASVKTEPASASGPVTEEE

Query:  IRAVLRQRTPVTTQDLVAKFKARLRSHEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED
        IRAVLRQRTPVTTQDLVAKFKARLRSHEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED
Subjt:  IRAVLRQRTPVTTQDLVAKFKARLRSHEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED

XP_022931162.1 transcription initiation factor IIF subunit alpha-like isoform X2 [Cucurbita moschata]

4.8e-180

99.17

Show/hide

Query:  MKNRKKTADGYERWMMKAASNGPAAFGEVEKFDDKDSVGATGRGRRKPTSDENEGNVSDRGEEDEEEEAARKNRLGLNKKGGGDDDDEEGPRGGDHDLDD
        MKNRKKTADGYERWMMKAASNGPAAFGEVEKFDDKDSVGATGRGRRKPTSDENEGNVSDRGEEDEEEEAARKNRLGLNKKGGGDDDDEEGPRGG+HDLDD
Subjt:  MKNRKKTADGYERWMMKAASNGPAAFGEVEKFDDKDSVGATGRGRRKPTSDENEGNVSDRGEEDEEEEAARKNRLGLNKKGGGDDDDEEGPRGGDHDLDD

Query:  DDIKKGDDWEHEEIFTDDDETTAPDREEREDLAPEVPAPPEIKQDEEDEDEENEGEGGLSKSGKELKKLLRRTGGLNDSDGEEEDDDDDD-AEEESGGTP
        DDI+KGDDWEHEEIFTDDDETTAPDREEREDLAPEVPAPPEIKQDEEDEDEENEGEGGLSKSGKELKKLLRRTGGLNDSDGEEEDDDDDD AEEESGGTP
Subjt:  DDIKKGDDWEHEEIFTDDDETTAPDREEREDLAPEVPAPPEIKQDEEDEDEENEGEGGLSKSGKELKKLLRRTGGLNDSDGEEEDDDDDD-AEEESGGTP

Query:  VAPSKQKDAVKEEAAANSPSKPAPSGSAKGTPSTAKTAKGKRKNGEDVKPSSAPPKKMKTETESKSTDEGVSTSRSTASKGAAASVKTEPASASGPVTEE
        VAPSKQKDAVKEEAAANSPSKPAPSGSAKGTPSTAKTAKGKRKNGEDVKPSSAPPKKMKTETESKSTDEGVSTSRSTASKGAAASVKTEPASASGPVTEE
Subjt:  VAPSKQKDAVKEEAAANSPSKPAPSGSAKGTPSTAKTAKGKRKNGEDVKPSSAPPKKMKTETESKSTDEGVSTSRSTASKGAAASVKTEPASASGPVTEE

Query:  EIRAVLRQRTPVTTQDLVAKFKARLRSHEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED
        EIRAVLRQRTPVTTQDLVAKFKARLRSHEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED
Subjt:  EIRAVLRQRTPVTTQDLVAKFKARLRSHEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED

XP_023532767.1 transcription initiation factor IIF subunit alpha-like isoform X1 [Cucurbita pepo subsp. pepo]

1.7e-177

97.78

Show/hide

Query:  MKNRKKTADGYERWMMKAASNGPAAFGEVEKFDDKDSVGATGRGRRKPTSDENEGNVSDRGEEDEEEEAARKNRLGLNKKGGGDDDDEEGPRGGDHDLDD
        MKNRKKTADGYERWMMKAASNGPAAFGEVEKFDDKDSVGATGRGRRKPTSD+NEGNVSDRGE DEEEEAARKNRLGLNKKGGGDDDDEEGPRGGDHDLDD
Subjt:  MKNRKKTADGYERWMMKAASNGPAAFGEVEKFDDKDSVGATGRGRRKPTSDENEGNVSDRGEEDEEEEAARKNRLGLNKKGGGDDDDEEGPRGGDHDLDD

Query:  DDIKKGDDWEHEEIFTDDDETTAPDREEREDLAPEVPAPPEIKQDEEDEDEENEGEGGLSKSGKELKKLLRRTGGLNDSDGE-EEDDDDDDAEEESGGTP
        DDI+KGDDWEHEEIFTDDDETTAPDREEREDLAPEVPAPPEIKQDEEDEDEENEGEGGLSKSGKELKKLL+RTGGLNDSDGE ++DDDDDDAEEESGGTP
Subjt:  DDIKKGDDWEHEEIFTDDDETTAPDREEREDLAPEVPAPPEIKQDEEDEDEENEGEGGLSKSGKELKKLLRRTGGLNDSDGE-EEDDDDDDAEEESGGTP

Query:  VAPSKQKDAVKEEAAANSPSKPAPSGSAKGTPSTAKTAKGKRKNGEDVKPSSAPPKKMKTETESKSTDEGVSTSRSTASKGAAASVKTEPASASGPVTEE
        VAPSKQKDAVKEEAAANSPSKPAPSGSAKGT STAKTAKGKRKNGEDVKPSSAPPKKMKTETESKSTDEGVSTSRSTASKGAAASVKTEPASASGPVTEE
Subjt:  VAPSKQKDAVKEEAAANSPSKPAPSGSAKGTPSTAKTAKGKRKNGEDVKPSSAPPKKMKTETESKSTDEGVSTSRSTASKGAAASVKTEPASASGPVTEE

Query:  EIRAVLRQRTPVTTQDLVAKFKARLRSHEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED
        EIRAVLRQRTPVTTQDLVAKFKARLRSHEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED
Subjt:  EIRAVLRQRTPVTTQDLVAKFKARLRSHEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LCA6 Transcription initiation factor IIF subunit alpha

5.4e-169

93.06

Show/hide

Query:  MKNRKKTADGYERWMMKAASNGPAAFGEVEKFDDKDSVGATGRGRRKPTSDENEGNVSDRGEEDEEEEAARKNRLGLNKKGGGDDDDEEGPRGGDHDLDD
        MKNRKKTADGYERWMMKAASNGPAAFGEVEKFDDK++VG +GRGRRK T DENEGNVSDRGEEDEEEEAARKNRLGL+KKGGGDDDDEEGPRGGDHDLDD
Subjt:  MKNRKKTADGYERWMMKAASNGPAAFGEVEKFDDKDSVGATGRGRRKPTSDENEGNVSDRGEEDEEEEAARKNRLGLNKKGGGDDDDEEGPRGGDHDLDD

Query:  DDIKKGDDWEHEEIFTDDDETTAPDREEREDLAPEVPAPPEIKQDEEDEDEENEGEGGLSKSGKELKKLLRRTGGLNDSDGEEEDDDDDDAEEESGGTPV
        DDI+KGDDWEHEEIFTDDDETTAPDREEREDLAPEVPAPPEIKQDEEDEDEENEGEGGLSKSGKELKKLLRRTGGLNDSDG E+DDDDDD +E++GGTPV
Subjt:  DDIKKGDDWEHEEIFTDDDETTAPDREEREDLAPEVPAPPEIKQDEEDEDEENEGEGGLSKSGKELKKLLRRTGGLNDSDGEEEDDDDDDAEEESGGTPV

Query:  APSKQKDAVKEEAAANSPSKPAPSGSAKGTPSTAKTAKGKRKNGEDVKPSSAPPKKMKTETESKSTDEGVSTSRSTASKGAAASVKTEPASASGPVTEEE
         PSKQKD VKEEAAANSPSKP PSGSAKGTPSTAKTAKGKRKNGEDVKPSSAPPKKMKTETESK+TDEGV TS+STASKGA ASVKTEP+S SGPVTEEE
Subjt:  APSKQKDAVKEEAAANSPSKPAPSGSAKGTPSTAKTAKGKRKNGEDVKPSSAPPKKMKTETESKSTDEGVSTSRSTASKGAAASVKTEPASASGPVTEEE

Query:  IRAVLRQRTPVTTQDLVAKFKARLRSHEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED
        IRAVLRQRTPVTTQDLVAKFKARLR+ EDKNAFAEILRRISRIQKTNGGPSYVVLRKPED
Subjt:  IRAVLRQRTPVTTQDLVAKFKARLRSHEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED

A0A6J1ESV2 Transcription initiation factor IIF subunit alpha

2.3e-180

99.17

Show/hide

Query:  MKNRKKTADGYERWMMKAASNGPAAFGEVEKFDDKDSVGATGRGRRKPTSDENEGNVSDRGEEDEEEEAARKNRLGLNKKGGGDDDDEEGPRGGDHDLDD
        MKNRKKTADGYERWMMKAASNGPAAFGEVEKFDDKDSVGATGRGRRKPTSDENEGNVSDRGEEDEEEEAARKNRLGLNKKGGGDDDDEEGPRGG+HDLDD
Subjt:  MKNRKKTADGYERWMMKAASNGPAAFGEVEKFDDKDSVGATGRGRRKPTSDENEGNVSDRGEEDEEEEAARKNRLGLNKKGGGDDDDEEGPRGGDHDLDD

Query:  DDIKKGDDWEHEEIFTDDDETTAPDREEREDLAPEVPAPPEIKQDEEDEDEENEGEGGLSKSGKELKKLLRRTGGLNDSDGEEEDDDDDD-AEEESGGTP
        DDI+KGDDWEHEEIFTDDDETTAPDREEREDLAPEVPAPPEIKQDEEDEDEENEGEGGLSKSGKELKKLLRRTGGLNDSDGEEEDDDDDD AEEESGGTP
Subjt:  DDIKKGDDWEHEEIFTDDDETTAPDREEREDLAPEVPAPPEIKQDEEDEDEENEGEGGLSKSGKELKKLLRRTGGLNDSDGEEEDDDDDD-AEEESGGTP

Query:  VAPSKQKDAVKEEAAANSPSKPAPSGSAKGTPSTAKTAKGKRKNGEDVKPSSAPPKKMKTETESKSTDEGVSTSRSTASKGAAASVKTEPASASGPVTEE
        VAPSKQKDAVKEEAAANSPSKPAPSGSAKGTPSTAKTAKGKRKNGEDVKPSSAPPKKMKTETESKSTDEGVSTSRSTASKGAAASVKTEPASASGPVTEE
Subjt:  VAPSKQKDAVKEEAAANSPSKPAPSGSAKGTPSTAKTAKGKRKNGEDVKPSSAPPKKMKTETESKSTDEGVSTSRSTASKGAAASVKTEPASASGPVTEE

Query:  EIRAVLRQRTPVTTQDLVAKFKARLRSHEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED
        EIRAVLRQRTPVTTQDLVAKFKARLRSHEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED
Subjt:  EIRAVLRQRTPVTTQDLVAKFKARLRSHEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED

A0A6J1ESX1 Transcription initiation factor IIF subunit alpha

9.5e-182

99.44

Show/hide

Query:  MKNRKKTADGYERWMMKAASNGPAAFGEVEKFDDKDSVGATGRGRRKPTSDENEGNVSDRGEEDEEEEAARKNRLGLNKKGGGDDDDEEGPRGGDHDLDD
        MKNRKKTADGYERWMMKAASNGPAAFGEVEKFDDKDSVGATGRGRRKPTSDENEGNVSDRGEEDEEEEAARKNRLGLNKKGGGDDDDEEGPRGG+HDLDD
Subjt:  MKNRKKTADGYERWMMKAASNGPAAFGEVEKFDDKDSVGATGRGRRKPTSDENEGNVSDRGEEDEEEEAARKNRLGLNKKGGGDDDDEEGPRGGDHDLDD

Query:  DDIKKGDDWEHEEIFTDDDETTAPDREEREDLAPEVPAPPEIKQDEEDEDEENEGEGGLSKSGKELKKLLRRTGGLNDSDGEEEDDDDDDAEEESGGTPV
        DDI+KGDDWEHEEIFTDDDETTAPDREEREDLAPEVPAPPEIKQDEEDEDEENEGEGGLSKSGKELKKLLRRTGGLNDSDGEEEDDDDDDAEEESGGTPV
Subjt:  DDIKKGDDWEHEEIFTDDDETTAPDREEREDLAPEVPAPPEIKQDEEDEDEENEGEGGLSKSGKELKKLLRRTGGLNDSDGEEEDDDDDDAEEESGGTPV

Query:  APSKQKDAVKEEAAANSPSKPAPSGSAKGTPSTAKTAKGKRKNGEDVKPSSAPPKKMKTETESKSTDEGVSTSRSTASKGAAASVKTEPASASGPVTEEE
        APSKQKDAVKEEAAANSPSKPAPSGSAKGTPSTAKTAKGKRKNGEDVKPSSAPPKKMKTETESKSTDEGVSTSRSTASKGAAASVKTEPASASGPVTEEE
Subjt:  APSKQKDAVKEEAAANSPSKPAPSGSAKGTPSTAKTAKGKRKNGEDVKPSSAPPKKMKTETESKSTDEGVSTSRSTASKGAAASVKTEPASASGPVTEEE

Query:  IRAVLRQRTPVTTQDLVAKFKARLRSHEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED
        IRAVLRQRTPVTTQDLVAKFKARLRSHEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED
Subjt:  IRAVLRQRTPVTTQDLVAKFKARLRSHEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED

A0A6J1K1N5 Transcription initiation factor IIF subunit alpha

5.4e-177

97.52

Show/hide

Query:  MKNRKKTADGYERWMMKAASNGPAAFGEVEKFDDKDSVGATGRGRRKPTSDENEGNVSDRGEEDEEEEAARKNRLGLNKKGGGDDDDEEGPRGGDHDLDD
        MKNRKKTADGYERWMMKAASNGPAAFGEVEKFDDKDS+GATGRGRRKPTSDENEGNVSDRGEEDEEEEAARKNRLGLNKKGGGDDDDEEGPRGGDHDLDD
Subjt:  MKNRKKTADGYERWMMKAASNGPAAFGEVEKFDDKDSVGATGRGRRKPTSDENEGNVSDRGEEDEEEEAARKNRLGLNKKGGGDDDDEEGPRGGDHDLDD

Query:  DDIKK-GDDWEHEEIFTDDDETTAPDREEREDLAPEVPAPPEIKQDEEDEDEENEGEGGLSKSGKELKKLLRRTGGLNDSDGEEE--DDDDDDAEEESGG
        DDI+  GDDWEHEEIFTDDDETTAPDREEREDLAPEVPAPPEIKQDEEDEDEENEGEGGLSKSGKELKKLLRR+GGLNDSDGEEE  DDDDDDAEEESGG
Subjt:  DDIKK-GDDWEHEEIFTDDDETTAPDREEREDLAPEVPAPPEIKQDEEDEDEENEGEGGLSKSGKELKKLLRRTGGLNDSDGEEE--DDDDDDAEEESGG

Query:  TPVAPSKQKDAVKEEAAANSPSKPAPSGSAKGTPSTAKTAKGKRKNGEDVKPSSAPPKKMKTETESKSTDEGVSTSRSTASKGAAASVKTEPASASGPVT
        TPVAPSKQKDAVKEEAAANSPSKPAPSGSAKGT STAKTAKGKRKNGEDVKPSSAPPKKMKTETESKSTDEG+STSRSTASKGAAASVKTEPASASGPVT
Subjt:  TPVAPSKQKDAVKEEAAANSPSKPAPSGSAKGTPSTAKTAKGKRKNGEDVKPSSAPPKKMKTETESKSTDEGVSTSRSTASKGAAASVKTEPASASGPVT

Query:  EEEIRAVLRQRTPVTTQDLVAKFKARLRSHEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED
        EEEIRAVLRQRTPVTTQDLVAKFKARLRSHEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED
Subjt:  EEEIRAVLRQRTPVTTQDLVAKFKARLRSHEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED

A0A6J1KAJ0 Transcription initiation factor IIF subunit alpha

5.4e-177

97.52

Show/hide

Query:  MKNRKKTADGYERWMMKAASNGPAAFGEVEKFDDKDSVGATGRGRRKPTSDENEGNVSDRGEEDEEEEAARKNRLGLNKKGGGDDDDEEGPRGGDHDLDD
        MKNRKKTADGYERWMMKAASNGPAAFGEVEKFDDKDS+GATGRGRRKPTSDENEGNVSDRGEEDEEEEAARKNRLGLNKKGGGDDDDEEGPRGGDHDLDD
Subjt:  MKNRKKTADGYERWMMKAASNGPAAFGEVEKFDDKDSVGATGRGRRKPTSDENEGNVSDRGEEDEEEEAARKNRLGLNKKGGGDDDDEEGPRGGDHDLDD

Query:  DDIKK-GDDWEHEEIFTDDDETTAPDREEREDLAPEVPAPPEIKQDEEDEDEENEGEGGLSKSGKELKKLLRRTGGLNDSDGEEE--DDDDDDAEEESGG
        DDI+  GDDWEHEEIFTDDDETTAPDREEREDLAPEVPAPPEIKQDEEDEDEENEGEGGLSKSGKELKKLLRR+GGLNDSDGEEE  DDDDDDAEEESGG
Subjt:  DDIKK-GDDWEHEEIFTDDDETTAPDREEREDLAPEVPAPPEIKQDEEDEDEENEGEGGLSKSGKELKKLLRRTGGLNDSDGEEE--DDDDDDAEEESGG

Query:  TPVAPSKQKDAVKEEAAANSPSKPAPSGSAKGTPSTAKTAKGKRKNGEDVKPSSAPPKKMKTETESKSTDEGVSTSRSTASKGAAASVKTEPASASGPVT
        TPVAPSKQKDAVKEEAAANSPSKPAPSGSAKGT STAKTAKGKRKNGEDVKPSSAPPKKMKTETESKSTDEG+STSRSTASKGAAASVKTEPASASGPVT
Subjt:  TPVAPSKQKDAVKEEAAANSPSKPAPSGSAKGTPSTAKTAKGKRKNGEDVKPSSAPPKKMKTETESKSTDEGVSTSRSTASKGAAASVKTEPASASGPVT

Query:  EEEIRAVLRQRTPVTTQDLVAKFKARLRSHEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED
        EEEIRAVLRQRTPVTTQDLVAKFKARLRSHEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED
Subjt:  EEEIRAVLRQRTPVTTQDLVAKFKARLRSHEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED

SwissProt top hits

e value

%identity

Alignment

Q9SU25 Transcription initiation factor IIF subunit alpha

6.3e-98

62.9

Show/hide

Query:  MKNRKKTADGYERWMMKAASNGPAAFGEVEKFDDKDSVGAT---GRGRRKPT-SDENEGNVSDRGEEDEEEEAARKNRLGLNKKGGGDDDDEEGPRGGDH
        MKNR+KTADGY+RWMMKAA+NGPA FGEV+  ++K+S G +   GRGR+K +  DE EGNVSDRG+EDEEEEA+RK+RLGLN+K   DDDDEEGPRGGD 
Subjt:  MKNRKKTADGYERWMMKAASNGPAAFGEVEKFDDKDSVGAT---GRGRRKPT-SDENEGNVSDRGEEDEEEEAARKNRLGLNKKGGGDDDDEEGPRGGDH

Query:  DLDDDDIKKGDDWEHEEIFTDDDETTAPDREERED-LAPEVPAPPEIKQDEEDEDEENEGEGGLSKSGKELKKLLRRTGGLNDSDGEEEDDDDDDAEEES
        D+DDDDI+KGDDWEHEEIFTDDDE    D EERED LAPE+PAPPEIKQDE+DE+ E E EGGLSKSGKELKKLL +  GL++SD  E+DDDD D EEE+
Subjt:  DLDDDDIKKGDDWEHEEIFTDDDETTAPDREERED-LAPEVPAPPEIKQDEEDEDEENEGEGGLSKSGKELKKLLRRTGGLNDSDGEEEDDDDDDAEEES

Query:  GGTPVAPSKQKDAVKEEAAANSPSKPAPSGSAKGTPSTAKTAKGKRK--NGEDVKPSSAPPKKMKTETESKSTDEGVSTSRSTASKGAAASVKTEPAS--
            V  SKQK+A KEE   N+P+KPAPSG  +GTP  AK +KGKRK  +G+  KPSS+  KK+KTE + KS+ +    +  + S     +VK EPAS  
Subjt:  GGTPVAPSKQKDAVKEEAAANSPSKPAPSGSAKGTPSTAKTAKGKRK--NGEDVKPSSAPPKKMKTETESKSTDEGVSTSRSTASKGAAASVKTEPAS--

Query:  ------ASGPVTEEEIRAVLRQRTPVTTQDLVAKFKARLRSHEDKNAFAEILRRISRIQKTNGGPSYVVLRK
              A+GPVTE+EIRAVL ++  VTTQDLV++FKARL++ EDKNAFA ILR+IS+IQK  G  ++VVLR+
Subjt:  ------ASGPVTEEEIRAVLRQRTPVTTQDLVAKFKARLRSHEDKNAFAEILRRISRIQKTNGGPSYVVLRK

Arabidopsis top hits

e value

%identity

Alignment

AT4G12610.1 transcription activators;DNA binding;RNA polymerase II transcription factors;catalytics;transcription initiation factors

4.5e-99

62.9

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Query:  MKNRKKTADGYERWMMKAASNGPAAFGEVEKFDDKDSVGAT---GRGRRKPT-SDENEGNVSDRGEEDEEEEAARKNRLGLNKKGGGDDDDEEGPRGGDH
        MKNR+KTADGY+RWMMKAA+NGPA FGEV+  ++K+S G +   GRGR+K +  DE EGNVSDRG+EDEEEEA+RK+RLGLN+K   DDDDEEGPRGGD 
Subjt:  MKNRKKTADGYERWMMKAASNGPAAFGEVEKFDDKDSVGAT---GRGRRKPT-SDENEGNVSDRGEEDEEEEAARKNRLGLNKKGGGDDDDEEGPRGGDH

Query:  DLDDDDIKKGDDWEHEEIFTDDDETTAPDREERED-LAPEVPAPPEIKQDEEDEDEENEGEGGLSKSGKELKKLLRRTGGLNDSDGEEEDDDDDDAEEES
        D+DDDDI+KGDDWEHEEIFTDDDE    D EERED LAPE+PAPPEIKQDE+DE+ E E EGGLSKSGKELKKLL +  GL++SD  E+DDDD D EEE+
Subjt:  DLDDDDIKKGDDWEHEEIFTDDDETTAPDREERED-LAPEVPAPPEIKQDEEDEDEENEGEGGLSKSGKELKKLLRRTGGLNDSDGEEEDDDDDDAEEES

Query:  GGTPVAPSKQKDAVKEEAAANSPSKPAPSGSAKGTPSTAKTAKGKRK--NGEDVKPSSAPPKKMKTETESKSTDEGVSTSRSTASKGAAASVKTEPAS--
            V  SKQK+A KEE   N+P+KPAPSG  +GTP  AK +KGKRK  +G+  KPSS+  KK+KTE + KS+ +    +  + S     +VK EPAS  
Subjt:  GGTPVAPSKQKDAVKEEAAANSPSKPAPSGSAKGTPSTAKTAKGKRK--NGEDVKPSSAPPKKMKTETESKSTDEGVSTSRSTASKGAAASVKTEPAS--

Query:  ------ASGPVTEEEIRAVLRQRTPVTTQDLVAKFKARLRSHEDKNAFAEILRRISRIQKTNGGPSYVVLRK
              A+GPVTE+EIRAVL ++  VTTQDLV++FKARL++ EDKNAFA ILR+IS+IQK  G  ++VVLR+
Subjt:  ------ASGPVTEEEIRAVLRQRTPVTTQDLVAKFKARLRSHEDKNAFAEILRRISRIQKTNGGPSYVVLRK

AT4G12610.2 transcription activators;DNA binding;RNA polymerase II transcription factors;catalytics;transcription initiation factors

4.5e-99

62.9

Show/hide

Query:  MKNRKKTADGYERWMMKAASNGPAAFGEVEKFDDKDSVGAT---GRGRRKPT-SDENEGNVSDRGEEDEEEEAARKNRLGLNKKGGGDDDDEEGPRGGDH
        MKNR+KTADGY+RWMMKAA+NGPA FGEV+  ++K+S G +   GRGR+K +  DE EGNVSDRG+EDEEEEA+RK+RLGLN+K   DDDDEEGPRGGD 
Subjt:  MKNRKKTADGYERWMMKAASNGPAAFGEVEKFDDKDSVGAT---GRGRRKPT-SDENEGNVSDRGEEDEEEEAARKNRLGLNKKGGGDDDDEEGPRGGDH

Query:  DLDDDDIKKGDDWEHEEIFTDDDETTAPDREERED-LAPEVPAPPEIKQDEEDEDEENEGEGGLSKSGKELKKLLRRTGGLNDSDGEEEDDDDDDAEEES
        D+DDDDI+KGDDWEHEEIFTDDDE    D EERED LAPE+PAPPEIKQDE+DE+ E E EGGLSKSGKELKKLL +  GL++SD  E+DDDD D EEE+
Subjt:  DLDDDDIKKGDDWEHEEIFTDDDETTAPDREERED-LAPEVPAPPEIKQDEEDEDEENEGEGGLSKSGKELKKLLRRTGGLNDSDGEEEDDDDDDAEEES

Query:  GGTPVAPSKQKDAVKEEAAANSPSKPAPSGSAKGTPSTAKTAKGKRK--NGEDVKPSSAPPKKMKTETESKSTDEGVSTSRSTASKGAAASVKTEPAS--
            V  SKQK+A KEE   N+P+KPAPSG  +GTP  AK +KGKRK  +G+  KPSS+  KK+KTE + KS+ +    +  + S     +VK EPAS  
Subjt:  GGTPVAPSKQKDAVKEEAAANSPSKPAPSGSAKGTPSTAKTAKGKRK--NGEDVKPSSAPPKKMKTETESKSTDEGVSTSRSTASKGAAASVKTEPAS--

Query:  ------ASGPVTEEEIRAVLRQRTPVTTQDLVAKFKARLRSHEDKNAFAEILRRISRIQKTNGGPSYVVLRK
              A+GPVTE+EIRAVL ++  VTTQDLV++FKARL++ EDKNAFA ILR+IS+IQK  G  ++VVLR+
Subjt:  ------ASGPVTEEEIRAVLRQRTPVTTQDLVAKFKARLRSHEDKNAFAEILRRISRIQKTNGGPSYVVLRK

Sequences

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CDS sequence

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ATGAAGAACCGAAAGAAGACAGCAGATGGATATGAAAGATGGATGATGAAAGCTGCAAGTAATGGTCCTGCGGCATTTGGTGAAGTTGAGAAGTTTGATGACAAAGATAG
TGTTGGTGCTACTGGCAGGGGACGCAGAAAACCTACTAGTGACGAGAATGAAGGTAATGTTTCAGATAGGGGAGAAGAAGATGAAGAAGAAGAGGCAGCAAGGAAGAACA
GATTGGGACTCAACAAAAAGGGTGGTGGTGATGATGATGATGAGGAAGGCCCTAGGGGAGGTGACCATGACTTGGATGATGATGATATCAAGAAAGGAGATGATTGGGAG
CATGAAGAGATTTTTACCGATGATGATGAAACTACTGCTCCAGATCGTGAAGAAAGGGAGGATTTAGCCCCTGAAGTTCCAGCACCTCCAGAGATTAAACAGGATGAAGA
AGACGAGGACGAAGAAAATGAAGGAGAGGGGGGGCTCAGCAAATCTGGGAAAGAGTTGAAGAAATTGCTTAGACGTACTGGGGGGCTTAATGATTCAGATGGAGAGGAGG
AGGACGACGACGACGACGACGCGGAAGAGGAGAGCGGTGGCACTCCAGTTGCGCCTTCAAAGCAGAAGGATGCAGTTAAAGAAGAAGCTGCAGCCAACAGTCCCTCAAAA
CCAGCTCCTTCTGGATCTGCTAAGGGAACCCCTTCTACTGCAAAGACAGCAAAGGGGAAAAGAAAAAATGGCGAGGATGTGAAACCATCCAGTGCACCTCCAAAGAAAAT
GAAAACAGAGACGGAATCAAAGTCGACAGATGAAGGCGTGTCTACTTCTAGAAGTACAGCCTCGAAAGGTGCAGCAGCATCAGTCAAAACAGAACCAGCATCCGCTTCTG
GACCCGTTACCGAGGAAGAAATTAGGGCTGTTTTGCGACAAAGGACACCTGTAACTACACAGGATCTTGTTGCAAAATTCAAAGCAAGACTACGATCTCACGAGGACAAG
AATGCTTTTGCTGAAATACTGAGGAGAATTTCAAGGATTCAAAAGACGAATGGAGGACCAAGCTATGTTGTGTTGAGAAAACCTGAAGACTAG

mRNA sequence

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TCAGAGTACTCCGTATCAAAGTATTCTTTGACTGTTACAGTTTCGACTGCGATTTTCTCAAAATTTTCTCAAAATTTTCGTCGCTCGCTTCATCTTCTCCTCTGTGTTCT
TTTCGACATCTCTCAAATTTTTCTGTCTGTAACCTTAGTCGCTTTGTTAGATCGCTTAATTACTGTAGATTGAGGAGAAATTTGCACCAATTTACCCTGCTTCTGCAAAT
TTACGACTTTTGTTGCTGAATTAGGGGGTGGGGCAATGTCATTGGATTTGCTGCTGAAGCCGTCGTGCAGTGGATGCGGATCCACGACGGAGTTGTATGGGAGCAATTGC
AAGCACATGACGTTGTGCTTGAGATGTGGCAAAACTATGGCTGAGAATAAGGGCAAATGTTACGACTGTGGTGCTACTGTTACTCGCTTAATAAGAGAATACAATGTTCG
AGCGAGTTCAAGTAGTGACAAGAACTACTTCATTGGTCGGTTCATGAGTGGGCTGCCAAACTTTTCGAAGAAAAGAAATGCCGAGAATAAATGGTCTCTTTACAAGGAAG
GTCTACAAGGACGCCAGCTTACTGATGCCCTGCGGGAAAAGTACAAGAATAGACCCTGGCTCTTGGAAGATGAAACTGGTCAATCTCAATTCCAAGGACATCTTGAGGGT
TCACAATCAGCAACATATTACTTGCTTGTATTGCAAGGAAAGGAATTTACTGCCATTCCTGCAGGTTCTTGGTATGGTTGATCTTTGAGTTAGTTTTTGTGAGTCAAGCT
GTAGTCTTTTGTCTGTTTGTCGTAGTCTTCTTCCTACATGGTTTCTAAATTTACCAATTCTTTAAGGCTTCTATATTTTCTACTAGACAATAATGCGGATGGAAAATTTC
AAGCCATCCATGGTAGTAAAGGGTTGATTGACCTCAATTTACAGGTACAACTTCAACAAAGTGGCACAGTATAAGCAACTTACATTGGAGGAGGCAGAAGAGAAAATGAA
GAACCGAAAGAAGACAGCAGATGGATATGAAAGATGGATGATGAAAGCTGCAAGTAATGGTCCTGCGGCATTTGGTGAAGTTGAGAAGTTTGATGACAAAGATAGTGTTG
GTGCTACTGGCAGGGGACGCAGAAAACCTACTAGTGACGAGAATGAAGGTAATGTTTCAGATAGGGGAGAAGAAGATGAAGAAGAAGAGGCAGCAAGGAAGAACAGATTG
GGACTCAACAAAAAGGGTGGTGGTGATGATGATGATGAGGAAGGCCCTAGGGGAGGTGACCATGACTTGGATGATGATGATATCAAGAAAGGAGATGATTGGGAGCATGA
AGAGATTTTTACCGATGATGATGAAACTACTGCTCCAGATCGTGAAGAAAGGGAGGATTTAGCCCCTGAAGTTCCAGCACCTCCAGAGATTAAACAGGATGAAGAAGACG
AGGACGAAGAAAATGAAGGAGAGGGGGGGCTCAGCAAATCTGGGAAAGAGTTGAAGAAATTGCTTAGACGTACTGGGGGGCTTAATGATTCAGATGGAGAGGAGGAGGAC
GACGACGACGACGACGCGGAAGAGGAGAGCGGTGGCACTCCAGTTGCGCCTTCAAAGCAGAAGGATGCAGTTAAAGAAGAAGCTGCAGCCAACAGTCCCTCAAAACCAGC
TCCTTCTGGATCTGCTAAGGGAACCCCTTCTACTGCAAAGACAGCAAAGGGGAAAAGAAAAAATGGCGAGGATGTGAAACCATCCAGTGCACCTCCAAAGAAAATGAAAA
CAGAGACGGAATCAAAGTCGACAGATGAAGGCGTGTCTACTTCTAGAAGTACAGCCTCGAAAGGTGCAGCAGCATCAGTCAAAACAGAACCAGCATCCGCTTCTGGACCC
GTTACCGAGGAAGAAATTAGGGCTGTTTTGCGACAAAGGACACCTGTAACTACACAGGATCTTGTTGCAAAATTCAAAGCAAGACTACGATCTCACGAGGACAAGAATGC
TTTTGCTGAAATACTGAGGAGAATTTCAAGGATTCAAAAGACGAATGGAGGACCAAGCTATGTTGTGTTGAGAAAACCTGAAGACTAGAAGAAGTAAGGACATGTTTCAT
CTTTGTGGGTTATGTGGTGCTTTATTATCTATTATTATCCATGCAAACAATAGATTTGTGTAAGAGATTGGTATATGTTGAGAAAGAAACAAAGAATTCTACAGGCCCTT
TTTGTAAAACTAATTGTTGGTAGTGTTTGATGAAGA

Protein sequence

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MKNRKKTADGYERWMMKAASNGPAAFGEVEKFDDKDSVGATGRGRRKPTSDENEGNVSDRGEEDEEEEAARKNRLGLNKKGGGDDDDEEGPRGGDHDLDDDDIKKGDDWE
HEEIFTDDDETTAPDREEREDLAPEVPAPPEIKQDEEDEDEENEGEGGLSKSGKELKKLLRRTGGLNDSDGEEEDDDDDDAEEESGGTPVAPSKQKDAVKEEAAANSPSK
PAPSGSAKGTPSTAKTAKGKRKNGEDVKPSSAPPKKMKTETESKSTDEGVSTSRSTASKGAAASVKTEPASASGPVTEEEIRAVLRQRTPVTTQDLVAKFKARLRSHEDK
NAFAEILRRISRIQKTNGGPSYVVLRKPED

Carg08916 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome