; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg08922 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg08922
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionzinc finger HIT domain-containing protein 3
Genome locationCarg_Chr02:9491828..9494973
RNA-Seq ExpressionCarg08922
SyntenyCarg08922
Gene Ontology termsGO:0000463 - maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process)
GO:0000492 - box C/D snoRNP assembly (biological process)
GO:0048254 - snoRNA localization (biological process)
GO:0005634 - nucleus (cellular component)
GO:0070761 - pre-snoRNP complex (cellular component)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR007529 - Zinc finger, HIT-type
IPR040197 - Zinc finger HIT domain-containing protein 3


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6606334.1 Zinc finger HIT domain-containing protein 3, partial [Cucurbita argyrosperma subsp. sororia]3.6e-6496.97Show/hide
Query:  MGPRQCQVCNEAPSKYKCPLCLVPYCSLVCFKKHKEVPCVKPVSAEDQSIAPNGSPVDRPVFVGDQNEVLEKAQLEAIASSSEIRNTLNDEKLRSLICAI
        MGPRQCQVCNEAPSKYKCPLCLVPYCSLVCFKKHKEVPCVKPVSAEDQSIAPNGSPVDRPVFVGDQNEVLEKAQLEAI    EIRNTLNDEKLRSLICAI
Subjt:  MGPRQCQVCNEAPSKYKCPLCLVPYCSLVCFKKHKEVPCVKPVSAEDQSIAPNGSPVDRPVFVGDQNEVLEKAQLEAIASSSEIRNTLNDEKLRSLICAI

Query:  DSSPDPEIELDKAMEDEAFRILSGKISSIIGS
        DSSPDPEIELDKAMEDEAFRILSGKISSIIGS
Subjt:  DSSPDPEIELDKAMEDEAFRILSGKISSIIGS

KAG7036274.1 Zinc finger HIT domain-containing protein 3 [Cucurbita argyrosperma subsp. argyrosperma]9.1e-68100Show/hide
Query:  MGPRQCQVCNEAPSKYKCPLCLVPYCSLVCFKKHKEVPCVKPVSAEDQSIAPNGSPVDRPVFVGDQNEVLEKAQLEAIASSSEIRNTLNDEKLRSLICAI
        MGPRQCQVCNEAPSKYKCPLCLVPYCSLVCFKKHKEVPCVKPVSAEDQSIAPNGSPVDRPVFVGDQNEVLEKAQLEAIASSSEIRNTLNDEKLRSLICAI
Subjt:  MGPRQCQVCNEAPSKYKCPLCLVPYCSLVCFKKHKEVPCVKPVSAEDQSIAPNGSPVDRPVFVGDQNEVLEKAQLEAIASSSEIRNTLNDEKLRSLICAI

Query:  DSSPDPEIELDKAMEDEAFRILSGKISSIIGS
        DSSPDPEIELDKAMEDEAFRILSGKISSIIGS
Subjt:  DSSPDPEIELDKAMEDEAFRILSGKISSIIGS

XP_022931150.1 zinc finger HIT domain-containing protein 3 [Cucurbita moschata]2.0e-6799.24Show/hide
Query:  MGPRQCQVCNEAPSKYKCPLCLVPYCSLVCFKKHKEVPCVKPVSAEDQSIAPNGSPVDRPVFVGDQNEVLEKAQLEAIASSSEIRNTLNDEKLRSLICAI
        MGPRQCQVCNEAPSKYKCPLCLVPYCSLVCFKKHKEVPCVKPVSAEDQSIAPNGSPVDRPVFVGDQNEVLEKAQLEAIASSSEIRNTLNDEKLRSLICAI
Subjt:  MGPRQCQVCNEAPSKYKCPLCLVPYCSLVCFKKHKEVPCVKPVSAEDQSIAPNGSPVDRPVFVGDQNEVLEKAQLEAIASSSEIRNTLNDEKLRSLICAI

Query:  DSSPDPEIELDKAMEDEAFRILSGKISSIIGS
        DSSPDPEIELDKAMEDEAFRILSGKISSI+GS
Subjt:  DSSPDPEIELDKAMEDEAFRILSGKISSIIGS

XP_022995777.1 zinc finger HIT domain-containing protein 3 [Cucurbita maxima]1.3e-6698.48Show/hide
Query:  MGPRQCQVCNEAPSKYKCPLCLVPYCSLVCFKKHKEVPCVKPVSAEDQSIAPNGSPVDRPVFVGDQNEVLEKAQLEAIASSSEIRNTLNDEKLRSLICAI
        MGPRQCQVCNEAPSKYKCPLCLVPYCSLVCFKKHKEVPCVKPVSAEDQSIAPNGSPVDRPVFVGDQNEVLEK QLEAIASSSEIRNTLNDEKLRSLICAI
Subjt:  MGPRQCQVCNEAPSKYKCPLCLVPYCSLVCFKKHKEVPCVKPVSAEDQSIAPNGSPVDRPVFVGDQNEVLEKAQLEAIASSSEIRNTLNDEKLRSLICAI

Query:  DSSPDPEIELDKAMEDEAFRILSGKISSIIGS
        DSSPDPEIELDKAMEDEAFRILS KISSIIGS
Subjt:  DSSPDPEIELDKAMEDEAFRILSGKISSIIGS

XP_023533050.1 zinc finger HIT domain-containing protein 3 [Cucurbita pepo subsp. pepo]5.9e-6798.48Show/hide
Query:  MGPRQCQVCNEAPSKYKCPLCLVPYCSLVCFKKHKEVPCVKPVSAEDQSIAPNGSPVDRPVFVGDQNEVLEKAQLEAIASSSEIRNTLNDEKLRSLICAI
        MGPRQCQVCNEAPSKYKCPLCLVPYCSLVCFKKHKEVPCVKPVSAEDQSIAPNGSPVDRPVFVGDQNEVLEKAQLEAIASSSE+RNTLNDEKLRSLICAI
Subjt:  MGPRQCQVCNEAPSKYKCPLCLVPYCSLVCFKKHKEVPCVKPVSAEDQSIAPNGSPVDRPVFVGDQNEVLEKAQLEAIASSSEIRNTLNDEKLRSLICAI

Query:  DSSPDPEIELDKAMEDEAFRILSGKISSIIGS
        DSSPDPEIELDKAMEDEAFRILS KISSIIGS
Subjt:  DSSPDPEIELDKAMEDEAFRILSGKISSIIGS

TrEMBL top hitse value%identityAlignment
A0A0A0KDK5 HIT-type domain-containing protein3.4e-5281.2Show/hide
Query:  MGPRQCQVCNEAPSKYKCPLCLVPYCSLVCFKKHKEVPC-VKPVSAEDQSIAPNGSPVDRPVFVGDQNEVLEKAQLEAIASSSEIRNTLNDEKLRSLICA
        M PR+CQVCNEAPSKYKCPLCL PYCSLVCFKKHKEVPC +KPVS  DQS A NG+ VDRP+ VGDQNEVLEK+QLEAIASSSEI N LNDEKL+  I A
Subjt:  MGPRQCQVCNEAPSKYKCPLCLVPYCSLVCFKKHKEVPC-VKPVSAEDQSIAPNGSPVDRPVFVGDQNEVLEKAQLEAIASSSEIRNTLNDEKLRSLICA

Query:  IDSSPDPEIELDKAMEDEAFRILSGKISSIIGS
        IDSSPDPE E+DKAMEDEAFRI S KISSII S
Subjt:  IDSSPDPEIELDKAMEDEAFRILSGKISSIIGS

A0A1S3CM88 zinc finger HIT domain-containing protein 3 isoform X12.8e-5484.21Show/hide
Query:  MGPRQCQVCNEAPSKYKCPLCLVPYCSLVCFKKHKEVPC-VKPVSAEDQSIAPNGSPVDRPVFVGDQNEVLEKAQLEAIASSSEIRNTLNDEKLRSLICA
        M PR+CQVCNEAPSKYKCPLCL PYCSLVCFKKHKEVPC +KPVS EDQS APNGS VDRP+ VGDQNEVLEK+QLEAIASSSEI N LNDEKLR  I A
Subjt:  MGPRQCQVCNEAPSKYKCPLCLVPYCSLVCFKKHKEVPC-VKPVSAEDQSIAPNGSPVDRPVFVGDQNEVLEKAQLEAIASSSEIRNTLNDEKLRSLICA

Query:  IDSSPDPEIELDKAMEDEAFRILSGKISSIIGS
        IDSS DPE ELDKAMEDEAFRI S KISSII S
Subjt:  IDSSPDPEIELDKAMEDEAFRILSGKISSIIGS

A0A6J1DXU2 zinc finger HIT domain-containing protein 3 isoform X19.2e-5887.12Show/hide
Query:  MGPRQCQVCNEAPSKYKCPLCLVPYCSLVCFKKHKEVPCVKPVSAEDQSIAPNGSPVDRPVFVGDQNEVLEKAQLEAIASSSEIRNTLNDEKLRSLICAI
        MGPRQCQVCNEAPSKYKCPLCL PYCSLVCFKKHKEVPCVKPVSA DQS APNGS VDRP+ V DQ+EVLEK+QLEAIASSSEIRNTLNDE L+ LICAI
Subjt:  MGPRQCQVCNEAPSKYKCPLCLVPYCSLVCFKKHKEVPCVKPVSAEDQSIAPNGSPVDRPVFVGDQNEVLEKAQLEAIASSSEIRNTLNDEKLRSLICAI

Query:  DSSPDPEIELDKAMEDEAFRILSGKISSIIGS
         SSPDPE ELD+AMEDEAFRI S KISSIIGS
Subjt:  DSSPDPEIELDKAMEDEAFRILSGKISSIIGS

A0A6J1ESW0 zinc finger HIT domain-containing protein 39.8e-6899.24Show/hide
Query:  MGPRQCQVCNEAPSKYKCPLCLVPYCSLVCFKKHKEVPCVKPVSAEDQSIAPNGSPVDRPVFVGDQNEVLEKAQLEAIASSSEIRNTLNDEKLRSLICAI
        MGPRQCQVCNEAPSKYKCPLCLVPYCSLVCFKKHKEVPCVKPVSAEDQSIAPNGSPVDRPVFVGDQNEVLEKAQLEAIASSSEIRNTLNDEKLRSLICAI
Subjt:  MGPRQCQVCNEAPSKYKCPLCLVPYCSLVCFKKHKEVPCVKPVSAEDQSIAPNGSPVDRPVFVGDQNEVLEKAQLEAIASSSEIRNTLNDEKLRSLICAI

Query:  DSSPDPEIELDKAMEDEAFRILSGKISSIIGS
        DSSPDPEIELDKAMEDEAFRILSGKISSI+GS
Subjt:  DSSPDPEIELDKAMEDEAFRILSGKISSIIGS

A0A6J1JZX2 zinc finger HIT domain-containing protein 36.4e-6798.48Show/hide
Query:  MGPRQCQVCNEAPSKYKCPLCLVPYCSLVCFKKHKEVPCVKPVSAEDQSIAPNGSPVDRPVFVGDQNEVLEKAQLEAIASSSEIRNTLNDEKLRSLICAI
        MGPRQCQVCNEAPSKYKCPLCLVPYCSLVCFKKHKEVPCVKPVSAEDQSIAPNGSPVDRPVFVGDQNEVLEK QLEAIASSSEIRNTLNDEKLRSLICAI
Subjt:  MGPRQCQVCNEAPSKYKCPLCLVPYCSLVCFKKHKEVPCVKPVSAEDQSIAPNGSPVDRPVFVGDQNEVLEKAQLEAIASSSEIRNTLNDEKLRSLICAI

Query:  DSSPDPEIELDKAMEDEAFRILSGKISSIIGS
        DSSPDPEIELDKAMEDEAFRILS KISSIIGS
Subjt:  DSSPDPEIELDKAMEDEAFRILSGKISSIIGS

SwissProt top hitse value%identityAlignment
Q15649 Zinc finger HIT domain-containing protein 33.8e-0830.71Show/hide
Query:  CQVCNEAPSKYKCPLCLVPYCSLVCFKKHKEV--PCVKPVSAEDQSIAPNGS--PVDRP---------VFVGDQNEVLEKAQLEAIASSSEIRNTLNDEK
        C +C E P KY+CP C VPYCS+VCF+KHKE   P  +PV  + +S  P  +  PV+           +   ++ + +    L+ +  S+ +R+ L +  
Subjt:  CQVCNEAPSKYKCPLCLVPYCSLVCFKKHKEV--PCVKPVSAEDQSIAPNGS--PVDRP---------VFVGDQNEVLEKAQLEAIASSSEIRNTLNDEK

Query:  LRSLICAIDSSPDPEIELDKAMEDEAF
        LR L+  +D   D    +   M++  F
Subjt:  LRSLICAIDSSPDPEIELDKAMEDEAF

Q2KIH1 Zinc finger HIT domain-containing protein 36.0e-0662.16Show/hide
Query:  GPRQCQVCNEAPSKYKCPLCLVPYCSLVCFKKHKEVP
        G   C VC E P KY+CP C VPYCSL CF+KHK  P
Subjt:  GPRQCQVCNEAPSKYKCPLCLVPYCSLVCFKKHKEVP

Q6UIM1 Zinc finger HIT domain-containing protein 3 (Fragment)1.1e-0729.92Show/hide
Query:  CQVCNEAPSKYKCPLCLVPYCSLVCFKKHKEV--PCVKPVSAEDQSIAP--NGSPVDRP---------VFVGDQNEVLEKAQLEAIASSSEIRNTLNDEK
        C +C E P KY+CP C VPYCS+ CF+KHKE   P  +PV  + +S  P     PV+           +   ++ + +    L+ +  S+ +R+ L +  
Subjt:  CQVCNEAPSKYKCPLCLVPYCSLVCFKKHKEV--PCVKPVSAEDQSIAP--NGSPVDRP---------VFVGDQNEVLEKAQLEAIASSSEIRNTLNDEK

Query:  LRSLICAIDSSPDPEIELDKAMEDEAF
        LR L+  +D   D    +   M++  F
Subjt:  LRSLICAIDSSPDPEIELDKAMEDEAF

Q6UIM2 Zinc finger HIT domain-containing protein 3 (Fragment)6.0e-0628.81Show/hide
Query:  KYKCPLCLVPYCSLVCFKKHKEV--PCVKPVSAEDQSIAPNGS--PVDRP---------VFVGDQNEVLEKAQLEAIASSSEIRNTLNDEKLRSLICAID
        KY+CP C VPYCS+ CF+KHKE   P  +PV  + +S  P  +  PV+           +   ++ + +    L+ +  S+ +R+ L +  LR L+  +D
Subjt:  KYKCPLCLVPYCSLVCFKKHKEV--PCVKPVSAEDQSIAPNGS--PVDRP---------VFVGDQNEVLEKAQLEAIASSSEIRNTLNDEKLRSLICAID

Query:  SSPDPEIELDKAMEDEAF
           D    +   M++  F
Subjt:  SSPDPEIELDKAMEDEAF

Q9CQK1 Zinc finger HIT domain-containing protein 33.5e-0630.4Show/hide
Query:  CQVCNEAPSKYKCPLCLVPYCSLVCFKKHKEV------PCVK-----PVSAEDQSIAPNGSPVDRPVFVGDQNEVLEKAQLEAIASSSEIRNTLNDEKLR
        C VC E P KY+CP C VPYCS+ CF+KHKE       P  K     PV +E+     + S V   +   ++ + +    L+ +  S  +R+ L +  LR
Subjt:  CQVCNEAPSKYKCPLCLVPYCSLVCFKKHKEV------PCVK-----PVSAEDQSIAPNGSPVDRPVFVGDQNEVLEKAQLEAIASSSEIRNTLNDEKLR

Query:  SLICAIDSSPDPEIELDKAMEDEAF
         L+ ++D   +    +   M++  F
Subjt:  SLICAIDSSPDPEIELDKAMEDEAF

Arabidopsis top hitse value%identityAlignment
AT4G28820.1 HIT-type Zinc finger family protein9.8e-2844.94Show/hide
Query:  CQVCNEAPSKYKCPLCLVPYCSLVCFKKHKEVPCVKPVSAEDQSIAPNGS---------------------------------PVDRPVFVGDQNEVLEK
        C++C +  SKYKCP CLVPYCSL CFK HKE PC KP         P  S                                 PV RP+ V ++  +LEK
Subjt:  CQVCNEAPSKYKCPLCLVPYCSLVCFKKHKEVPCVKPVSAEDQSIAPNGS---------------------------------PVDRPVFVGDQNEVLEK

Query:  AQLEAIASSSEIRNTLNDEKLRSLICAIDSSPDPEIELDKAMEDEAFRILSGKISSII
         Q EAIASSSEIR  L DE L+ LI +IDSS +P  ELD+AM  EAFR  + KI S I
Subjt:  AQLEAIASSSEIRNTLNDEKLRSLICAIDSSPDPEIELDKAMEDEAFRILSGKISSII

AT4G28820.2 HIT-type Zinc finger family protein7.5e-2845.86Show/hide
Query:  CQVCNEAPSKYKCPLCLVPYCSLVCFKKHKEVPCVK---PVSAEDQSIAP-----------------------------NGSPVDRPVFVGDQNEVLEKA
        C++C +  SKYKCP CLVPYCSL CFK HKE PC K   P S E++  +P                                PV RP+ V ++  +LEK 
Subjt:  CQVCNEAPSKYKCPLCLVPYCSLVCFKKHKEVPCVK---PVSAEDQSIAP-----------------------------NGSPVDRPVFVGDQNEVLEKA

Query:  QLEAIASSSEIRNTLNDEKLRSLICAIDSSPDPEIELDKAMEDEAFRILSGKISSII
        Q EAIASSSEIR  L DE L+ LI +IDSS +P  ELD+AM  EAFR  + KI S I
Subjt:  QLEAIASSSEIRNTLNDEKLRSLICAIDSSPDPEIELDKAMEDEAFRILSGKISSII


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCCCTCGGCAATGTCAGGTCTGCAATGAAGCACCATCCAAATATAAATGCCCCCTATGCCTTGTTCCTTACTGCTCTCTGGTTTGTTTCAAGAAACACAAAGAAGT
GCCCTGTGTTAAGCCTGTGTCTGCAGAGGACCAATCAATTGCTCCTAATGGATCACCTGTAGATAGGCCAGTATTTGTTGGAGACCAGAATGAAGTACTAGAAAAGGCGC
AGCTAGAGGCTATTGCTTCTTCCTCAGAAATACGCAATACTTTGAATGATGAAAAACTCCGTAGCCTCATCTGTGCCATTGATAGCTCACCAGATCCAGAAATTGAGCTT
GATAAAGCTATGGAAGATGAAGCATTTCGCATACTAAGCGGCAAGATATCATCGATCATCGGCTCCTAG
mRNA sequenceShow/hide mRNA sequence
CAAAACCCTCGTGGGAAGAGTAAGCCGCGCGCCAAACTCGCTTGTGCTTGGGCTGAGAACTTCACATTCTCTCCTTCCGCATTTGAGATTTTAAGAAATTGAACATTCTA
TGGGCCCTCGGCAATGTCAGGTCTGCAATGAAGCACCATCCAAATATAAATGCCCCCTATGCCTTGTTCCTTACTGCTCTCTGGTTTGTTTCAAGAAACACAAAGAAGTG
CCCTGTGTTAAGCCTGTGTCTGCAGAGGACCAATCAATTGCTCCTAATGGATCACCTGTAGATAGGCCAGTATTTGTTGGAGACCAGAATGAAGTACTAGAAAAGGCGCA
GCTAGAGGCTATTGCTTCTTCCTCAGAAATACGCAATACTTTGAATGATGAAAAACTCCGTAGCCTCATCTGTGCCATTGATAGCTCACCAGATCCAGAAATTGAGCTTG
ATAAAGCTATGGAAGATGAAGCATTTCGCATACTAAGCGGCAAGATATCATCGATCATCGGCTCCTAGCCCTGGTGGTCACAGATGGAGGGGAAGAAAGTTGTCCAAGGT
ATATATGTATGATCAATGGGACATTTCTGCCTCATTGCCTGAGGTGCTCGGCTCAGAAGATGCTGAAATCAAGGACAAGGAAGCCACGGTTAACAGAATGAAGTATGCTG
GGATTGACCATCCAAGAGCGTAGCTATGATATGTTTGATGGTGATAAATGTTCTAAGTTCAGCAATGATATATAGTTGTCTTTTTTTCTGTCCCTGCAGACTCCTTTTAA
TGATCTACCAGTGGTACAACTCTACATGGGAAAATGACCCTTTGAGAGGATGAACCAAAGCTGTTTGTTTTATGCTTTCTCGACTTATTAGTCTGTAGAAAGACATGTTT
TTGACAAAAGGATAGCATTGTTTTTTTTCCCTCTTTCTTTCTCCTCTCGTTATATATATATATATATC
Protein sequenceShow/hide protein sequence
MGPRQCQVCNEAPSKYKCPLCLVPYCSLVCFKKHKEVPCVKPVSAEDQSIAPNGSPVDRPVFVGDQNEVLEKAQLEAIASSSEIRNTLNDEKLRSLICAIDSSPDPEIEL
DKAMEDEAFRILSGKISSIIGS