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Carg08959 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg08959
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionNucleolar protein 10
Genome locationCarg_Chr02:9673234..9677898
RNA-Seq ExpressionCarg08959
SyntenyCarg08959
Gene Ontology termsGO:0001522 - pseudouridine synthesis (biological process)
GO:0006364 - rRNA processing (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0030515 - snoRNA binding (molecular function)
InterPro domainsIPR007264 - H/ACA ribonucleoprotein complex, subunit Nop10
IPR036756 - H/ACA ribonucleoprotein complex, subunit Nop10 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG4913253.1 hypothetical protein JHK86_053686 [Glycine max]7.3e-1856.67Show/hide
Query:  SLSPAI-SVLGFFVWNLDVLVHGNV------FLPSEYGGCFSSEKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHPPPKY
        +L+P + S+ GF+++   +L  G+V      ++       ++++K+SPLGL TQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQ PPPKY
Subjt:  SLSPAI-SVLGFFVWNLDVLVHGNV------FLPSEYGGCFSSEKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHPPPKY
KAG6606368.1 H/ACA ribonucleoprotein complex subunit 3-like protein, partial [Cucurbita argyrosperma subsp. sororia]2.5e-1892Show/hide
Query:  FSSEKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHPPPKY
        ++++KESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHPPPKY
Subjt:  FSSEKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHPPPKY
KAG7036310.1 H/ACA ribonucleoprotein complex subunit 3-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma]1.1e-42100Show/hide
Query:  LRDSLSPAISVLGFFVWNLDVLVHGNVFLPSEYGGCFSSEKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHPPPKY
        LRDSLSPAISVLGFFVWNLDVLVHGNVFLPSEYGGCFSSEKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHPPPKY
Subjt:  LRDSLSPAISVLGFFVWNLDVLVHGNVFLPSEYGGCFSSEKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHPPPKY
XP_022931219.1 H/ACA ribonucleoprotein complex subunit 3-like protein [Cucurbita moschata]2.5e-1892Show/hide
Query:  FSSEKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHPPPKY
        ++++KESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHPPPKY
Subjt:  FSSEKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHPPPKY
XP_030543963.1 H/ACA ribonucleoprotein complex subunit 3-like protein [Rhodamnia argentea]1.3e-1790Show/hide
Query:  FSSEKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHPPPKY
        ++++KESPLGL TQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHPPPKY
Subjt:  FSSEKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHPPPKY
TrEMBL top hitse value%identityAlignment
A0A445FHI3 Nucleolar protein 103.6e-1856.67Show/hide
Query:  SLSPAI-SVLGFFVWNLDVLVHGNV------FLPSEYGGCFSSEKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHPPPKY
        +L+P + S+ GF+++   +L  G+V      ++       ++++K+SPLGL TQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQ PPPKY
Subjt:  SLSPAI-SVLGFFVWNLDVLVHGNV------FLPSEYGGCFSSEKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHPPPKY
A0A4D6M8M9 Nucleolar protein 101.4e-1758.54Show/hide
Query:  LSPAISVLGFFVWNLDVLVHGNVFLPSEYGGCFSSEKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHPPPKY
        LS ++S+       L V+++   ++       ++++KESPLGL TQSAHPARFSPDDKYSRQRV LKKRFGLLPTQ PPPKY
Subjt:  LSPAISVLGFFVWNLDVLVHGNVFLPSEYGGCFSSEKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHPPPKY
A0A6J1EYV1 Nucleolar protein 101.2e-1892Show/hide
Query:  FSSEKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHPPPKY
        ++++KESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHPPPKY
Subjt:  FSSEKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHPPPKY
A0A6J1KA21 Nucleolar protein 101.2e-1892Show/hide
Query:  FSSEKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHPPPKY
        ++++KESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHPPPKY
Subjt:  FSSEKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHPPPKY
K7MYQ3 Nucleolar protein 103.6e-1856.67Show/hide
Query:  SLSPAI-SVLGFFVWNLDVLVHGNV------FLPSEYGGCFSSEKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHPPPKY
        +L+P + S+ GF+++   +L  G+V      ++       ++++K+SPLGL TQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQ PPPKY
Subjt:  SLSPAI-SVLGFFVWNLDVLVHGNV------FLPSEYGGCFSSEKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHPPPKY
SwissProt top hitse value%identityAlignment
Q54J26 H/ACA ribonucleoprotein complex subunit 36.9e-1164Show/hide
Query:  FSSEKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHPPPKY
        ++ +KESP    T SAHPARFS DDKYSR+R+ LKKRFGLL TQ PP ++
Subjt:  FSSEKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHPPPKY
Q6BQP3 H/ACA ribonucleoprotein complex subunit NOP102.4e-1172.73Show/hide
Query:  FSSEKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQ
        ++  K +  G +T+SAHPARFSPDDKYSRQRV LKKRFGLLPTQ
Subjt:  FSSEKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQ
Q6DRH5 H/ACA ribonucleoprotein complex subunit 31.5e-1064.58Show/hide
Query:  FSSEKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHPPP
        ++ +K  P G  T SAHPARFSPDDK+SR RV +KKRFGLL TQ P P
Subjt:  FSSEKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHPPP
Q93XX8 H/ACA ribonucleoprotein complex subunit 3-like protein1.1e-1678Show/hide
Query:  FSSEKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHPPPKY
        ++++KESPLGL T+SAHPARFSPDDKYS+QRVLLKKRFGLLPTQ+ P +Y
Subjt:  FSSEKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHPPPKY
Q9P7M5 H/ACA ribonucleoprotein complex subunit nop109.0e-1154.69Show/hide
Query:  VHGNVFLPSEYGGCFSSEKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHPPPKY
        +H   +L  E    ++ +K SP G VT+S+HPARFSPDDKYSRQR  LKKRF +L TQ P   Y
Subjt:  VHGNVFLPSEYGGCFSSEKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHPPPKY
Arabidopsis top hitse value%identityAlignment
AT2G20490.1 nucleolar RNA-binding Nop10p family protein7.8e-1878Show/hide
Query:  FSSEKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHPPPKY
        ++++KESPLGL T+SAHPARFSPDDKYS+QRVLLKKRFGLLPTQ+ P +Y
Subjt:  FSSEKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHPPPKY
AT2G20490.2 nucleolar RNA-binding Nop10p family protein1.7e-1773.21Show/hide
Query:  SEYGGCFSSEKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHPPPKY
        +E G    + KESPLGL T+SAHPARFSPDDKYS+QRVLLKKRFGLLPTQ+ P +Y
Subjt:  SEYGGCFSSEKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHPPPKY

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CTTCGCGATTCCTTGTCTCCCGCCATTTCCGTTCTAGGGTTTTTCGTCTGGAATTTGGATGTACTCGTTCATGGCAATGTTTTCTTGCCATCCGAGTATGGTGGTTGTTT
CTCCTCAGAGAAAGAATCGCCTCTAGGTTTGGTCACACAATCTGCTCATCCAGCCCGTTTCTCCCCTGATGACAAATACTCGAGGCAGAGAGTTCTTCTTAAGAAGCGAT
TTGGCTTGCTACCCACGCAGCATCCACCTCCAAAGTACTAA
mRNA sequenceShow/hide mRNA sequence
CTTCGCGATTCCTTGTCTCCCGCCATTTCCGTTCTAGGGTTTTTCGTCTGGAATTTGGATGTACTCGTTCATGGCAATGTTTTCTTGCCATCCGAGTATGGTGGTTGTTT
CTCCTCAGAGAAAGAATCGCCTCTAGGTTTGGTCACACAATCTGCTCATCCAGCCCGTTTCTCCCCTGATGACAAATACTCGAGGCAGAGAGTTCTTCTTAAGAAGCGAT
TTGGCTTGCTACCCACGCAGCATCCACCTCCAAAGTACTAAGCCGAGTGCGTTATCAAATCAGTTGATTCTTCTGTTTAGTCACCCCCCCAAATAGTAGATCGTGACTTG
ATGAAAGTTTGATCTGTGGCTTGTAATCGAGCTGTAAAGCACAAACCAATGTTGAACCTTTCTTTAAGCTTGGCTTTATATTGGCATCGAACTTTATTTTACCGAAAGCA
AACTTATCTACTTTGAAGAACTGGTTAATGCAAGATGATGGACCTTTTTTTCATACTTTTTTCCCCACTTTTGTACAACATTGCAGTTGTCAAGCACCAATGTCAGCTGA
ACCTTTCTAAAGTTGTCCTTGTATGTGTATTTAACCTGATTTGCTAACAATCAATTGAGCCTAAGCCATAAGGTGGGAGTCCCCAATTCCTTCGGTTGGTTTTGAAGTTC
AAGTTCCCTCTGTCCTGGTTTGCTGTCAAGACATATGCACCTGAAATTGGACGATTACAACTTGGGAGTTCATCTTGTCCACAGCTAAGAAGGTACGCAAGGTTCATTTT
GTGATCCAGTGGTTGGCTGAACTACAATTAGATTAACAGGGTTATGTGCCTTTTATGGCCAGTGAATATGCCTTTTATTTCAGGATATTAGAATTTGAACCTTGAAAATG
GGTTAGGACCTGAGAGTTTGGGCCTAAGTGGCCATATAATTTTGCTGAAGTGTAGCCAAGTGGTTTGGTATGCAAGCCTTCAGCCCCACCCAAGAAATAATGAACTGAAA
CAGATATATCATCATCATCATCAAGTATTTTGAATGGGGTTTGATGTCTCACATAATTTTGTCTTTCATAGGACTTGTTTAATAGTTAACTTAAGTGAGAAAGATATATC
ACATTAGTTTAATTAAAGTTGGAACATTTTAATATAAACACAAAGCGGGCCAAAGTTGTAGAATAAAGGCACATTTTCATGTGTAATAAACCGCGTTTGTCGAATTATTG
TCGAATTAAAAGCGTCTTTTGCAGAAATGACGTTGTCGGTTGCGTTCCATGGAAACATGAAAAAGGAAATGTAGAAAAAGAAGAAATAAAATGCGAAATGAATCTTGTTG
AAAGGATTGGTGGTAAGATTATCTTTGTTTATAGACATTGTTTTTAGAAAAGCAGGAGGAAGAACATGGCACCCAATGAAGAAGACAAAGACCAATAGCCCTTTTCTTAA
ATCACAAAAGCCATTCTAACACAGATCAATTTCTTTAATCTCCAAAAGATATGATTTGATATACGTGAGTCTAAATCAGGGAGAGTTTTTGGTCAAGTAATTTAACACAA
TTTCTTGTTATTATTATTACAATTCAAAATTAAATTTGACACAAAGTGATTATGAATGAAAAAAATAAATTTGACACAAAGTGATGATGAATGGGGCCATTAATAGAAAT
TTTTTATTCGATGTTATTTTAGCTTCACATCCATCGTGATGGTGATGATCCATGAACACTTACTCTCTCTTACTTTGAACTAAATATGGTTGAAATACAACATTTTATTT
TTTATAAAAAATTATGAGACAAAACTTCTGCATCTTAATAATGCATCTTAATAATCTCTCAATTTCTC
Protein sequenceShow/hide protein sequence
LRDSLSPAISVLGFFVWNLDVLVHGNVFLPSEYGGCFSSEKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHPPPKY