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Carg09004 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg09004
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionCST complex subunit STN1
Genome locationCarg_Chr02:9906163..9908268
RNA-Seq ExpressionCarg09004
SyntenyCarg09004
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR040260 - Replication factor A protein-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6571457.1 CST complex subunit STN1, partial [Cucurbita argyrosperma subsp. sororia]2.2e-3056.08Show/hide
Query:  LPKRKSPANISAFANTTVKGQKLEARYIVGVVVSRESLP-----------VGC------QNHLTSPYSASLHQPDVRIIGNMATRFAAQIRGWDCCFARV
        L +  S ++ S   + + +G  +    IVGVVV R+  P            GC       NHLTSPY A  HQPDVRIIGNMAT FAAQIR      ARV
Subjt:  LPKRKSPANISAFANTTVKGQKLEARYIVGVVVSRESLP-----------VGC------QNHLTSPYSASLHQPDVRIIGNMATRFAAQIRGWDCCFARV

Query:  RGKVRDYGGVVQIRVSDFVVEDDPNAEILHWLDCMRLAQKCYDLFPTP
        RGKV  Y GVVQI VSD VVE+DPNAEILHWLDCMRLA KCYDL P P
Subjt:  RGKVRDYGGVVQIRVSDFVVEDDPNAEILHWLDCMRLAQKCYDLFPTP
KAG7011223.1 CST complex subunit STN1, partial [Cucurbita argyrosperma subsp. argyrosperma]2.2e-3056.08Show/hide
Query:  LPKRKSPANISAFANTTVKGQKLEARYIVGVVVSRESLP-----------VGC------QNHLTSPYSASLHQPDVRIIGNMATRFAAQIRGWDCCFARV
        L +  S ++ S   + + +G  +    IVGVVV R+  P            GC       NHLTSPY A  HQPDVRIIGNMAT FAAQIR      ARV
Subjt:  LPKRKSPANISAFANTTVKGQKLEARYIVGVVVSRESLP-----------VGC------QNHLTSPYSASLHQPDVRIIGNMATRFAAQIRGWDCCFARV

Query:  RGKVRDYGGVVQIRVSDFVVEDDPNAEILHWLDCMRLAQKCYDLFPTP
        RGKV  Y GVVQI VSD VVE+DPNAEILHWLDCMRLA KCYDL P P
Subjt:  RGKVRDYGGVVQIRVSDFVVEDDPNAEILHWLDCMRLAQKCYDLFPTP
KAG7036353.1 CST complex subunit STN1, partial [Cucurbita argyrosperma subsp. argyrosperma]1.2e-79100Show/hide
Query:  MKREVVERNNGGSKKLPKRKSPANISAFANTTVKGQKLEARYIVGVVVSRESLPVGCQNHLTSPYSASLHQPDVRIIGNMATRFAAQIRGWDCCFARVRG
        MKREVVERNNGGSKKLPKRKSPANISAFANTTVKGQKLEARYIVGVVVSRESLPVGCQNHLTSPYSASLHQPDVRIIGNMATRFAAQIRGWDCCFARVRG
Subjt:  MKREVVERNNGGSKKLPKRKSPANISAFANTTVKGQKLEARYIVGVVVSRESLPVGCQNHLTSPYSASLHQPDVRIIGNMATRFAAQIRGWDCCFARVRG

Query:  KVRDYGGVVQIRVSDFVVEDDPNAEILHWLDCMRLAQKCYDLFPTPS
        KVRDYGGVVQIRVSDFVVEDDPNAEILHWLDCMRLAQKCYDLFPTPS
Subjt:  KVRDYGGVVQIRVSDFVVEDDPNAEILHWLDCMRLAQKCYDLFPTPS
XP_022963452.1 LOW QUALITY PROTEIN: CST complex subunit STN1 [Cucurbita moschata]2.9e-3060.77Show/hide
Query:  KGQKLEARYIVGVVVSRESLP-----------VGC------QNHLTSPYSASLHQPDVRIIGNMATRFAAQIRGWDCCFARVRGKVRDYGGVVQIRVSDF
        +G  +    IVGVVV R+  P            GC       NHLTSPY AS HQPDVRIIGNMAT FAAQIR      ARVRG+V  Y GVVQ+ VSD 
Subjt:  KGQKLEARYIVGVVVSRESLP-----------VGC------QNHLTSPYSASLHQPDVRIIGNMATRFAAQIRGWDCCFARVRGKVRDYGGVVQIRVSDF

Query:  VVEDDPNAEILHWLDCMRLAQKCYDLFPTP
        VVE+DPNAEILHWLDCMRLA KCYDL P P
Subjt:  VVEDDPNAEILHWLDCMRLAQKCYDLFPTP
XP_023553655.1 CST complex subunit STN1 [Cucurbita pepo subsp. pepo]9.9e-3156.55Show/hide
Query:  RKSPANISAFANTTVKGQKLEARYIVGVVVSRESLP-----------VGC------QNHLTSPYSASLHQPDVRIIGNMATRFAAQIRGWDCCFARVRGK
        + S ++ S   + + +G  +    +VGVVV R+  P            GC       NHLTSPY AS HQPDVRIIGNMAT FAAQIR      ARVRGK
Subjt:  RKSPANISAFANTTVKGQKLEARYIVGVVVSRESLP-----------VGC------QNHLTSPYSASLHQPDVRIIGNMATRFAAQIRGWDCCFARVRGK

Query:  VRDYGGVVQIRVSDFVVEDDPNAEILHWLDCMRLAQKCYDLFPTP
        V  Y GVVQI VSD VVE+DPNAEILHWLDCMRLA KCYDL P P
Subjt:  VRDYGGVVQIRVSDFVVEDDPNAEILHWLDCMRLAQKCYDLFPTP
TrEMBL top hitse value%identityAlignment
A0A0A0LNV0 OB domain-containing protein2.9e-2858.02Show/hide
Query:  KGQKLEARYIVGVVVSRESLP--------------VGC---QNHLTSPYSASLHQPDVRIIGNMATRFAAQIRGWDCCFARVRGKVRDYGGVVQIRVSDF
        KG  +    IVGVVV R+  P              VGC    NHLTS Y AS H  DVRI+G+MAT FAAQIR       RVRGK+  Y G+VQI VSD 
Subjt:  KGQKLEARYIVGVVVSRESLP--------------VGC---QNHLTSPYSASLHQPDVRIIGNMATRFAAQIRGWDCCFARVRGKVRDYGGVVQIRVSDF

Query:  VVEDDPNAEILHWLDCMRLAQKCYDLFPTPS
        VVEDDPNAEILHWLD MRLA KCYDL PTP+
Subjt:  VVEDDPNAEILHWLDCMRLAQKCYDLFPTPS
A0A1S3BLT5 CST complex subunit STN18.5e-2857.25Show/hide
Query:  KGQKLEARYIVGVVVSRESLP--------------VGC---QNHLTSPYSASLHQPDVRIIGNMATRFAAQIRGWDCCFARVRGKVRDYGGVVQIRVSDF
        KG  +    IVGVVV R+  P              VGC    NHLTS Y AS H PDVRI+ +MAT FAAQIR       RVRGK+  Y G+VQI VSD 
Subjt:  KGQKLEARYIVGVVVSRESLP--------------VGC---QNHLTSPYSASLHQPDVRIIGNMATRFAAQIRGWDCCFARVRGKVRDYGGVVQIRVSDF

Query:  VVEDDPNAEILHWLDCMRLAQKCYDLFPTPS
        VVEDDPNAEILHWLD MRLA KCYDL P P+
Subjt:  VVEDDPNAEILHWLDCMRLAQKCYDLFPTPS
A0A5D3E3H2 CST complex subunit STN18.5e-2857.25Show/hide
Query:  KGQKLEARYIVGVVVSRESLP--------------VGC---QNHLTSPYSASLHQPDVRIIGNMATRFAAQIRGWDCCFARVRGKVRDYGGVVQIRVSDF
        KG  +    IVGVVV R+  P              VGC    NHLTS Y AS H PDVRI+ +MAT FAAQIR       RVRGK+  Y G+VQI VSD 
Subjt:  KGQKLEARYIVGVVVSRESLP--------------VGC---QNHLTSPYSASLHQPDVRIIGNMATRFAAQIRGWDCCFARVRGKVRDYGGVVQIRVSDF

Query:  VVEDDPNAEILHWLDCMRLAQKCYDLFPTPS
        VVEDDPNAEILHWLD MRLA KCYDL P P+
Subjt:  VVEDDPNAEILHWLDCMRLAQKCYDLFPTPS
A0A6J1HFA9 LOW QUALITY PROTEIN: CST complex subunit STN11.4e-3060.77Show/hide
Query:  KGQKLEARYIVGVVVSRESLP-----------VGC------QNHLTSPYSASLHQPDVRIIGNMATRFAAQIRGWDCCFARVRGKVRDYGGVVQIRVSDF
        +G  +    IVGVVV R+  P            GC       NHLTSPY AS HQPDVRIIGNMAT FAAQIR      ARVRG+V  Y GVVQ+ VSD 
Subjt:  KGQKLEARYIVGVVVSRESLP-----------VGC------QNHLTSPYSASLHQPDVRIIGNMATRFAAQIRGWDCCFARVRGKVRDYGGVVQIRVSDF

Query:  VVEDDPNAEILHWLDCMRLAQKCYDLFPTP
        VVE+DPNAEILHWLDCMRLA KCYDL P P
Subjt:  VVEDDPNAEILHWLDCMRLAQKCYDLFPTP
A0A6J1HUX0 CST complex subunit STN13.9e-2556.06Show/hide
Query:  RKSPANISAFANTTVKGQKLEARYIVGVVVSRESLP-----------VGC------QNHLTSPYSASLHQPDVRIIGNMATRFAAQIRGWDCCFARVRGK
        + S ++ S   + + +G  +    IVGVVVSR+  P            GC       NHLTSPY AS HQPDVRIIGNMAT FAAQIR      ARVRGK
Subjt:  RKSPANISAFANTTVKGQKLEARYIVGVVVSRESLP-----------VGC------QNHLTSPYSASLHQPDVRIIGNMATRFAAQIRGWDCCFARVRGK

Query:  VRDYGGVVQIRVSDFVVEDDPNAEILHWLDCM
        V  Y GVVQI VSD VVE+DPNAEILHWLDCM
Subjt:  VRDYGGVVQIRVSDFVVEDDPNAEILHWLDCM
SwissProt top hitse value%identityAlignment
Q9LMK5 CST complex subunit STN13.5e-1537.96Show/hide
Query:  KSPANISAFANTTVKGQKLEARYIVGVVVSRESLP----------VGC------QNHLTSPYSASLHQPDVRIIGNMATRFAAQIRGWDCCFARVRGKVR
        +SP   ++F  + + G  +    IVG +VSR+  P           GC       N LTS Y +      + ++ + A + AAQIR      ARVRG+V 
Subjt:  KSPANISAFANTTVKGQKLEARYIVGVVVSRESLP----------VGC------QNHLTSPYSASLHQPDVRIIGNMATRFAAQIRGWDCCFARVRGKVR

Query:  DYGGVVQIRVSDFVVEDDPNAEILHWLDCMRLAQKCY
         Y GV+QI  +  V E DPNAEILHWL+C++L Q CY
Subjt:  DYGGVVQIRVSDFVVEDDPNAEILHWLDCMRLAQKCY
Arabidopsis top hitse value%identityAlignment
AT1G07130.1 Nucleic acid-binding, OB-fold-like protein2.5e-1637.96Show/hide
Query:  KSPANISAFANTTVKGQKLEARYIVGVVVSRESLP----------VGC------QNHLTSPYSASLHQPDVRIIGNMATRFAAQIRGWDCCFARVRGKVR
        +SP   ++F  + + G  +    IVG +VSR+  P           GC       N LTS Y +      + ++ + A + AAQIR      ARVRG+V 
Subjt:  KSPANISAFANTTVKGQKLEARYIVGVVVSRESLP----------VGC------QNHLTSPYSASLHQPDVRIIGNMATRFAAQIRGWDCCFARVRGKVR

Query:  DYGGVVQIRVSDFVVEDDPNAEILHWLDCMRLAQKCY
         Y GV+QI  +  V E DPNAEILHWL+C++L Q CY
Subjt:  DYGGVVQIRVSDFVVEDDPNAEILHWLDCMRLAQKCY

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGCGTGAAGTGGTAGAGAGAAATAATGGAGGATCAAAGAAGTTACCAAAAAGGAAGTCTCCTGCTAATATTTCAGCTTTTGCAAACACCACCGTTAAAGGGCAAAA
ATTGGAAGCAAGGTACATCGTCGGCGTTGTGGTCTCTCGCGAGTCGCTACCTGTTGGCTGCCAAAACCATCTCACGTCGCCATATTCTGCTTCACTCCACCAGCCAGATG
TTCGGATAATTGGAAATATGGCGACCCGTTTCGCAGCCCAAATTAGGGGTTGGGATTGTTGCTTTGCTAGGGTTCGGGGGAAGGTGAGGGACTATGGAGGTGTGGTGCAG
ATCAGGGTGTCAGATTTTGTGGTTGAGGACGACCCAAATGCTGAAATTCTGCATTGGTTGGATTGCATGAGGTTGGCTCAAAAGTGTTATGACCTCTTCCCTACACCCTC
GTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAGCGTGAAGTGGTAGAGAGAAATAATGGAGGATCAAAGAAGTTACCAAAAAGGAAGTCTCCTGCTAATATTTCAGCTTTTGCAAACACCACCGTTAAAGGGCAAAA
ATTGGAAGCAAGGTACATCGTCGGCGTTGTGGTCTCTCGCGAGTCGCTACCTGTTGGCTGCCAAAACCATCTCACGTCGCCATATTCTGCTTCACTCCACCAGCCAGATG
TTCGGATAATTGGAAATATGGCGACCCGTTTCGCAGCCCAAATTAGGGGTTGGGATTGTTGCTTTGCTAGGGTTCGGGGGAAGGTGAGGGACTATGGAGGTGTGGTGCAG
ATCAGGGTGTCAGATTTTGTGGTTGAGGACGACCCAAATGCTGAAATTCTGCATTGGTTGGATTGCATGAGGTTGGCTCAAAAGTGTTATGACCTCTTCCCTACACCCTC
GTAG
Protein sequenceShow/hide protein sequence
MKREVVERNNGGSKKLPKRKSPANISAFANTTVKGQKLEARYIVGVVVSRESLPVGCQNHLTSPYSASLHQPDVRIIGNMATRFAAQIRGWDCCFARVRGKVRDYGGVVQ
IRVSDFVVEDDPNAEILHWLDCMRLAQKCYDLFPTPS