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Carg09036 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg09036
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionReverse transcriptase domain-containing protein
Genome locationCarg_Chr11:1939568..1940247
RNA-Seq ExpressionCarg09036
SyntenyCarg09036
Gene Ontology termsGO:0036503 - ERAD pathway (biological process)
GO:0005783 - endoplasmic reticulum (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6587744.1 hypothetical protein SDJN03_16309, partial [Cucurbita argyrosperma subsp. sororia]2.4e-5690.55Show/hide
Query:  KLCIKPILSWAFHRYQTGALTPLIRWLSQGMQRAAAPPHPPRPGVRAENAPVAPPAAGQEAVIAAAAFAEGENQPGNEENRAVENENVAEPGAANGGLNW
        +L +  I +   + YQTGALTPLIRWLSQGMQRAAAPPHPPRPGVRAENAPVAPPAAGQEAVIAAAAFAEGENQPGNEENRAVENENVAEPGAANGGLNW
Subjt:  KLCIKPILSWAFHRYQTGALTPLIRWLSQGMQRAAAPPHPPRPGVRAENAPVAPPAAGQEAVIAAAAFAEGENQPGNEENRAVENENVAEPGAANGGLNW

Query:  WGVVKEIQMIVFGFITSLLPGFHNHMD
        WGVVKEIQMIVFGFITSLLPGFHNHMD
Subjt:  WGVVKEIQMIVFGFITSLLPGFHNHMD

KAG7021714.1 hypothetical protein SDJN02_15441, partial [Cucurbita argyrosperma subsp. argyrosperma]4.9e-78100Show/hide
Query:  MDPGLDKYYMLFSLLTFIVFILVKLCIKPILSWAFHRYQTGALTPLIRWLSQGMQRAAAPPHPPRPGVRAENAPVAPPAAGQEAVIAAAAFAEGENQPGN
        MDPGLDKYYMLFSLLTFIVFILVKLCIKPILSWAFHRYQTGALTPLIRWLSQGMQRAAAPPHPPRPGVRAENAPVAPPAAGQEAVIAAAAFAEGENQPGN
Subjt:  MDPGLDKYYMLFSLLTFIVFILVKLCIKPILSWAFHRYQTGALTPLIRWLSQGMQRAAAPPHPPRPGVRAENAPVAPPAAGQEAVIAAAAFAEGENQPGN

Query:  EENRAVENENVAEPGAANGGLNWWGVVKEIQMIVFGFITSLLPGFHNHMD
        EENRAVENENVAEPGAANGGLNWWGVVKEIQMIVFGFITSLLPGFHNHMD
Subjt:  EENRAVENENVAEPGAANGGLNWWGVVKEIQMIVFGFITSLLPGFHNHMD

XP_023007004.1 uncharacterized protein LOC111499626 isoform X1 [Cucurbita maxima]1.8e-5182.22Show/hide
Query:  KLCIKPILSWAFHRYQTGALTPLIRWLSQGMQRAAAPPHPPRPGVRAENAPVAPPAAGQEAVIAAAAF--------AEGENQPGNEENRAVENENVAEPG
        +L +  I +   + YQTGALTPLIRWLSQGMQRAAAPPHPPRPGV+AENAPVAPPAAGQEA IAAAA         AEGENQPGNE NRAVENENVAEPG
Subjt:  KLCIKPILSWAFHRYQTGALTPLIRWLSQGMQRAAAPPHPPRPGVRAENAPVAPPAAGQEAVIAAAAF--------AEGENQPGNEENRAVENENVAEPG

Query:  AANGGLNWWGVVKEIQMIVFGFITSLLPGFHNHMD
        AANGGLNWWGVVKEIQMIVFGFITSLLPGFHNHMD
Subjt:  AANGGLNWWGVVKEIQMIVFGFITSLLPGFHNHMD

XP_023530470.1 uncharacterized protein LOC111793026 isoform X1 [Cucurbita pepo subsp. pepo]5.5e-5384.21Show/hide
Query:  KLCIKPILSWAFHRYQTGALTPLIRWLSQGMQRAAAPPHPPRPGVRAENAPVAPPAAGQEAVIAAAAF------AEGENQPGNEENRAVENENVAEPGAA
        +L +  I +   + YQTGALTP IRWLSQGMQRAAAPPHPPRPGVRAENAPVAPPAAGQEA IAA AF      AEGENQPGNEENRAVENENVAEPGAA
Subjt:  KLCIKPILSWAFHRYQTGALTPLIRWLSQGMQRAAAPPHPPRPGVRAENAPVAPPAAGQEAVIAAAAF------AEGENQPGNEENRAVENENVAEPGAA

Query:  NGGLNWWGVVKEIQMIVFGFITSLLPGFHNHMD
        NGGLNWWGVVKEIQMIVFGFITSLLPGFHNHMD
Subjt:  NGGLNWWGVVKEIQMIVFGFITSLLPGFHNHMD

XP_023530471.1 uncharacterized protein LOC111793026 isoform X2 [Cucurbita pepo subsp. pepo]5.5e-5384.21Show/hide
Query:  KLCIKPILSWAFHRYQTGALTPLIRWLSQGMQRAAAPPHPPRPGVRAENAPVAPPAAGQEAVIAAAAF------AEGENQPGNEENRAVENENVAEPGAA
        +L +  I +   + YQTGALTP IRWLSQGMQRAAAPPHPPRPGVRAENAPVAPPAAGQEA IAA AF      AEGENQPGNEENRAVENENVAEPGAA
Subjt:  KLCIKPILSWAFHRYQTGALTPLIRWLSQGMQRAAAPPHPPRPGVRAENAPVAPPAAGQEAVIAAAAF------AEGENQPGNEENRAVENENVAEPGAA

Query:  NGGLNWWGVVKEIQMIVFGFITSLLPGFHNHMD
        NGGLNWWGVVKEIQMIVFGFITSLLPGFHNHMD
Subjt:  NGGLNWWGVVKEIQMIVFGFITSLLPGFHNHMD

TrEMBL top hitse value%identityAlignment
A0A5A7UX77 Uncharacterized protein3.9e-4475.56Show/hide
Query:  KLCIKPILSWAFHRYQTGALTPLIRWLSQGMQRAAAPPHPPRPGVRAENAPVAPPAAGQEAVIAAAAFAEG------ENQPGNEENRAVENENVAE--PG
        +L +  I +   + YQTGALTPLIRWLSQGMQRAAAPPHPPRPGVRAENAP+APPAA QE     AAFAEG      ENQP NE NR  ENENVAE   G
Subjt:  KLCIKPILSWAFHRYQTGALTPLIRWLSQGMQRAAAPPHPPRPGVRAENAPVAPPAAGQEAVIAAAAFAEG------ENQPGNEENRAVENENVAE--PG

Query:  AANGGLNWWGVVKEIQMIVFGFITSLLPGFHNHMD
        A NGGLNWWGVVKEIQMIVFGFITSLLPGFHNHMD
Subjt:  AANGGLNWWGVVKEIQMIVFGFITSLLPGFHNHMD

A0A6J1EPJ0 uncharacterized protein LOC111436643 isoform X22.0e-4873.86Show/hide
Query:  MLFSLLTFIVFIL------VKLCIKPILSWAFHRYQTGALTPLIRWLSQGMQRAAAPPHPPRPGVRAENAPVAPPAAGQEAVIAAAAF------AEGENQ
        +L   L  ++FI+       +L +  I +   + YQTGALTPLIR LS GMQRAAAPPHPPRPGV+AENAPVA PAAGQEA IAAAAF      AEGENQ
Subjt:  MLFSLLTFIVFIL------VKLCIKPILSWAFHRYQTGALTPLIRWLSQGMQRAAAPPHPPRPGVRAENAPVAPPAAGQEAVIAAAAF------AEGENQ

Query:  PGNEENRAVENENVAEPGAANGGLNWWGVVKEIQMIVFGFITSLLPGFHNHMD
         GNEENRAVENENVAEPGAANGGLNWWGVVKEIQMIVFGFITSLLPGFHNHMD
Subjt:  PGNEENRAVENENVAEPGAANGGLNWWGVVKEIQMIVFGFITSLLPGFHNHMD

A0A6J1EW49 uncharacterized protein LOC111436643 isoform X12.0e-4873.86Show/hide
Query:  MLFSLLTFIVFIL------VKLCIKPILSWAFHRYQTGALTPLIRWLSQGMQRAAAPPHPPRPGVRAENAPVAPPAAGQEAVIAAAAF------AEGENQ
        +L   L  ++FI+       +L +  I +   + YQTGALTPLIR LS GMQRAAAPPHPPRPGV+AENAPVA PAAGQEA IAAAAF      AEGENQ
Subjt:  MLFSLLTFIVFIL------VKLCIKPILSWAFHRYQTGALTPLIRWLSQGMQRAAAPPHPPRPGVRAENAPVAPPAAGQEAVIAAAAF------AEGENQ

Query:  PGNEENRAVENENVAEPGAANGGLNWWGVVKEIQMIVFGFITSLLPGFHNHMD
         GNEENRAVENENVAEPGAANGGLNWWGVVKEIQMIVFGFITSLLPGFHNHMD
Subjt:  PGNEENRAVENENVAEPGAANGGLNWWGVVKEIQMIVFGFITSLLPGFHNHMD

A0A6J1L3R5 uncharacterized protein LOC111499626 isoform X18.6e-5282.22Show/hide
Query:  KLCIKPILSWAFHRYQTGALTPLIRWLSQGMQRAAAPPHPPRPGVRAENAPVAPPAAGQEAVIAAAAF--------AEGENQPGNEENRAVENENVAEPG
        +L +  I +   + YQTGALTPLIRWLSQGMQRAAAPPHPPRPGV+AENAPVAPPAAGQEA IAAAA         AEGENQPGNE NRAVENENVAEPG
Subjt:  KLCIKPILSWAFHRYQTGALTPLIRWLSQGMQRAAAPPHPPRPGVRAENAPVAPPAAGQEAVIAAAAF--------AEGENQPGNEENRAVENENVAEPG

Query:  AANGGLNWWGVVKEIQMIVFGFITSLLPGFHNHMD
        AANGGLNWWGVVKEIQMIVFGFITSLLPGFHNHMD
Subjt:  AANGGLNWWGVVKEIQMIVFGFITSLLPGFHNHMD

A0A6J1L6J3 uncharacterized protein LOC111499626 isoform X28.6e-5282.22Show/hide
Query:  KLCIKPILSWAFHRYQTGALTPLIRWLSQGMQRAAAPPHPPRPGVRAENAPVAPPAAGQEAVIAAAAF--------AEGENQPGNEENRAVENENVAEPG
        +L +  I +   + YQTGALTPLIRWLSQGMQRAAAPPHPPRPGV+AENAPVAPPAAGQEA IAAAA         AEGENQPGNE NRAVENENVAEPG
Subjt:  KLCIKPILSWAFHRYQTGALTPLIRWLSQGMQRAAAPPHPPRPGVRAENAPVAPPAAGQEAVIAAAAF--------AEGENQPGNEENRAVENENVAEPG

Query:  AANGGLNWWGVVKEIQMIVFGFITSLLPGFHNHMD
        AANGGLNWWGVVKEIQMIVFGFITSLLPGFHNHMD
Subjt:  AANGGLNWWGVVKEIQMIVFGFITSLLPGFHNHMD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G29960.1 unknown protein1.6e-2653.97Show/hide
Query:  KLCIKPILSWAFHRYQTGALTPLIRWLSQGMQRAAAPP-HPPRPGVRAENAPVAPPAAGQEAVIAAAAFAEGENQPGNEENRAVENENVAE-PGAANGGL
        +L +  I +   + YQTGAL P +RWLSQGM RAA PP  P RP VRA+N P A     + AV+      EGE    +  NRA  N N  E   A N G 
Subjt:  KLCIKPILSWAFHRYQTGALTPLIRWLSQGMQRAAAPP-HPPRPGVRAENAPVAPPAAGQEAVIAAAAFAEGENQPGNEENRAVENENVAE-PGAANGGL

Query:  NWWGVVKEIQMIVFGFITSLLPGFHN
         WWG+VKEIQMIVFGFITSLLPGFHN
Subjt:  NWWGVVKEIQMIVFGFITSLLPGFHN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATCCTGGTCTCGACAAGTATTATATGCTCTTTTCCCTATTGACATTTATTGTCTTTATATTAGTGAAGCTATGTATTAAGCCGATCCTCTCTTGGGCATTTCACAG
ATATCAAACGGGAGCGCTTACACCATTGATACGATGGCTTTCACAAGGCATGCAAAGGGCAGCTGCACCTCCCCATCCCCCGAGACCAGGAGTTCGAGCAGAGAACGCTC
CGGTTGCTCCTCCAGCTGCAGGGCAAGAGGCTGTGATTGCTGCTGCTGCTTTTGCAGAGGGTGAGAACCAACCTGGAAATGAAGAGAACCGAGCTGTTGAAAATGAGAAT
GTAGCAGAGCCTGGTGCTGCAAATGGTGGTCTTAACTGGTGGGGAGTGGTGAAGGAAATCCAAATGATAGTCTTTGGCTTTATTACTTCCCTACTCCCAGGCTTCCATAA
TCACATGGACTAG
mRNA sequenceShow/hide mRNA sequence
ATGGATCCTGGTCTCGACAAGTATTATATGCTCTTTTCCCTATTGACATTTATTGTCTTTATATTAGTGAAGCTATGTATTAAGCCGATCCTCTCTTGGGCATTTCACAG
ATATCAAACGGGAGCGCTTACACCATTGATACGATGGCTTTCACAAGGCATGCAAAGGGCAGCTGCACCTCCCCATCCCCCGAGACCAGGAGTTCGAGCAGAGAACGCTC
CGGTTGCTCCTCCAGCTGCAGGGCAAGAGGCTGTGATTGCTGCTGCTGCTTTTGCAGAGGGTGAGAACCAACCTGGAAATGAAGAGAACCGAGCTGTTGAAAATGAGAAT
GTAGCAGAGCCTGGTGCTGCAAATGGTGGTCTTAACTGGTGGGGAGTGGTGAAGGAAATCCAAATGATAGTCTTTGGCTTTATTACTTCCCTACTCCCAGGCTTCCATAA
TCACATGGACTAG
Protein sequenceShow/hide protein sequence
MDPGLDKYYMLFSLLTFIVFILVKLCIKPILSWAFHRYQTGALTPLIRWLSQGMQRAAAPPHPPRPGVRAENAPVAPPAAGQEAVIAAAAFAEGENQPGNEENRAVENEN
VAEPGAANGGLNWWGVVKEIQMIVFGFITSLLPGFHNHMD