CuGenDBv2

Gene ID	Carg09042
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	U3 small nucleolar RNA-associated protein 25 isoform X1
Genome location	Carg_Chr11:1896188..1900092
RNA-Seq Expression	Carg09042
Synteny	Carg09042
Gene Ontology terms	GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process) GO:0005730 - nucleolus (cellular component) GO:0032040 - small-subunit processome (cellular component) GO:0019843 - rRNA binding (molecular function) GO:0034511 - U3 snoRNA binding (molecular function)
InterPro domains	IPR010678 - U3 small nucleolar RNA-associated protein 25

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6587740.1 hypothetical protein SDJN03_16305, partial [Cucurbita argyrosperma subsp. sororia]

2.1e-118

99.57

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Query:  MVKQLVRKRGASEAEELEVFKEQSNYDNLLMQLQSCNKDVAASCMKRQRQEEGRSDTEDDEDSCPESSSALEEEEEEEEEEEEEGTDDESPKSSSLGNNM
        MVKQLVRKRGASEAEELEVFKEQSNYDNLLMQLQSCNKDVAASCMKRQRQEEGRSDTEDDEDSCPESSSALEEEEEEEEEEEEEGTDDESPKSSSLGNNM
Subjt:  MVKQLVRKRGASEAEELEVFKEQSNYDNLLMQLQSCNKDVAASCMKRQRQEEGRSDTEDDEDSCPESSSALEEEEEEEEEEEEEGTDDESPKSSSLGNNM

Query:  SESMPNSETEEDTESDRSDTDQENELEVGLHGDPSTSDITSSFNKHMEHKLSKEEVENFPKMKWKYTWAVPAVGMSNCKWSGTGECLLKDLETKSSNYNL
        SE MPNSETEEDTESDRSDTDQENELEVGLHGDPSTSDITSSFNKHMEHKLSKEEVENFPKMKWKYTWAVPAVGMSNCKWSGTGECLLKDLETKSSNYNL
Subjt:  SESMPNSETEEDTESDRSDTDQENELEVGLHGDPSTSDITSSFNKHMEHKLSKEEVENFPKMKWKYTWAVPAVGMSNCKWSGTGECLLKDLETKSSNYNL

Query:  KQRLYEHWLDVYKTSGGTDFHSSRQRFFFSL
        KQRLYEHWLDVYKTSGGTDFHSSRQRFFFSL
Subjt:  KQRLYEHWLDVYKTSGGTDFHSSRQRFFFSL

KAG7021708.1 hypothetical protein SDJN02_15435, partial [Cucurbita argyrosperma subsp. argyrosperma]

6.0e-129

100

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Query:  MVKQLVRKRGASEAEELEVFKEQSNYDNLLMQLQSCNKDVAASCMKRQRQEEGRSDTEDDEDSCPESSSALEEEEEEEEEEEEEGTDDESPKSSSLGNNM
        MVKQLVRKRGASEAEELEVFKEQSNYDNLLMQLQSCNKDVAASCMKRQRQEEGRSDTEDDEDSCPESSSALEEEEEEEEEEEEEGTDDESPKSSSLGNNM
Subjt:  MVKQLVRKRGASEAEELEVFKEQSNYDNLLMQLQSCNKDVAASCMKRQRQEEGRSDTEDDEDSCPESSSALEEEEEEEEEEEEEGTDDESPKSSSLGNNM

Query:  SESMPNSETEEDTESDRSDTDQENELEVGLHGDPSTSDITSSFNKHMEHKLSKEEVENFPKMKWKYTWAVPAVGMSNCKWSGTGECLLKDLETKSSNYNL
        SESMPNSETEEDTESDRSDTDQENELEVGLHGDPSTSDITSSFNKHMEHKLSKEEVENFPKMKWKYTWAVPAVGMSNCKWSGTGECLLKDLETKSSNYNL
Subjt:  SESMPNSETEEDTESDRSDTDQENELEVGLHGDPSTSDITSSFNKHMEHKLSKEEVENFPKMKWKYTWAVPAVGMSNCKWSGTGECLLKDLETKSSNYNL

Query:  KQRLYEHWLDVYKTSGGTDFHSSRQRFFFSLYEDSKLDETENIGKMQE
        KQRLYEHWLDVYKTSGGTDFHSSRQRFFFSLYEDSKLDETENIGKMQE
Subjt:  KQRLYEHWLDVYKTSGGTDFHSSRQRFFFSLYEDSKLDETENIGKMQE

XP_022930084.1 U3 small nucleolar RNA-associated protein 25 isoform X1 [Cucurbita moschata]

2.1e-118

99.57

Show/hide

Query:  MVKQLVRKRGASEAEELEVFKEQSNYDNLLMQLQSCNKDVAASCMKRQRQEEGRSDTEDDEDSCPESSSALEEEEEEEEEEEEEGTDDESPKSSSLGNNM
        MVKQLVRKRGASEAEELEVFKEQSNYDNLLMQLQSCNKDVAASCMKRQRQEEGRSDTEDDEDSCPESSSALEEEEEEEEEEEEEGTDDESPKSSSLGNNM
Subjt:  MVKQLVRKRGASEAEELEVFKEQSNYDNLLMQLQSCNKDVAASCMKRQRQEEGRSDTEDDEDSCPESSSALEEEEEEEEEEEEEGTDDESPKSSSLGNNM

Query:  SESMPNSETEEDTESDRSDTDQENELEVGLHGDPSTSDITSSFNKHMEHKLSKEEVENFPKMKWKYTWAVPAVGMSNCKWSGTGECLLKDLETKSSNYNL
        SE MPNSETEEDTESDRSDTDQENELEVGLHGDPSTSDITSSFNKHMEHKLSKEEVENFPKMKWKYTWAVPAVGMSNCKWSGTGECLLKDLETKSSNYNL
Subjt:  SESMPNSETEEDTESDRSDTDQENELEVGLHGDPSTSDITSSFNKHMEHKLSKEEVENFPKMKWKYTWAVPAVGMSNCKWSGTGECLLKDLETKSSNYNL

Query:  KQRLYEHWLDVYKTSGGTDFHSSRQRFFFSL
        KQRLYEHWLDVYKTSGGTDFHSSRQRFFFSL
Subjt:  KQRLYEHWLDVYKTSGGTDFHSSRQRFFFSL

XP_022930086.1 U3 small nucleolar RNA-associated protein 25 isoform X2 [Cucurbita moschata]

5.8e-116

98.27

Show/hide

Query:  MVKQLVRKRGASEAEELEVFKEQSNYDNLLMQLQSCNKDVAASCMKRQRQEEGRSDTEDDEDSCPESSSALEEEEEEEEEEEEEGTDDESPKSSSLGNNM
        MVKQLVRKRGASEAEELEVFKEQSNYDNLLMQLQSCNKDVAASCMKRQRQEEGRSDTEDDEDSCPESSSAL   EEEEEEEEEEGTDDESPKSSSLGNNM
Subjt:  MVKQLVRKRGASEAEELEVFKEQSNYDNLLMQLQSCNKDVAASCMKRQRQEEGRSDTEDDEDSCPESSSALEEEEEEEEEEEEEGTDDESPKSSSLGNNM

Query:  SESMPNSETEEDTESDRSDTDQENELEVGLHGDPSTSDITSSFNKHMEHKLSKEEVENFPKMKWKYTWAVPAVGMSNCKWSGTGECLLKDLETKSSNYNL
        SE MPNSETEEDTESDRSDTDQENELEVGLHGDPSTSDITSSFNKHMEHKLSKEEVENFPKMKWKYTWAVPAVGMSNCKWSGTGECLLKDLETKSSNYNL
Subjt:  SESMPNSETEEDTESDRSDTDQENELEVGLHGDPSTSDITSSFNKHMEHKLSKEEVENFPKMKWKYTWAVPAVGMSNCKWSGTGECLLKDLETKSSNYNL

Query:  KQRLYEHWLDVYKTSGGTDFHSSRQRFFFSL
        KQRLYEHWLDVYKTSGGTDFHSSRQRFFFSL
Subjt:  KQRLYEHWLDVYKTSGGTDFHSSRQRFFFSL

XP_023531649.1 U3 small nucleolar RNA-associated protein 25 isoform X1 [Cucurbita pepo subsp. pepo]

9.2e-114

96.54

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Query:  MVKQLVRKRGASEAEELEVFKEQSNYDNLLMQLQSCNKDVAASCMKRQRQEEGRSDTEDDEDSCPESSSALEEEEEEEEEEEEEGTDDESPKSSSLGNNM
        MVKQLVRKRGASEAEELEVFKEQSNYDNLLMQLQSCNKDVAASCMKRQRQEEGRSDTEDDEDSCPESSSAL  EEEEEEEEEEEGTDDESPKSSSLGNNM
Subjt:  MVKQLVRKRGASEAEELEVFKEQSNYDNLLMQLQSCNKDVAASCMKRQRQEEGRSDTEDDEDSCPESSSALEEEEEEEEEEEEEGTDDESPKSSSLGNNM

Query:  SESMPNSETEEDTESDRSDTDQENELEVGLHGDPSTSDITSSFNKHMEHKLSKEEVENFPKMKWKYTWAVPAVGMSNCKWSGTGECLLKDLETKSSNYNL
        SE MP++ETEEDTESDRSDTDQENELEVG HG+PSTSDITSSFNKHMEHKLSKEEVENFPKMKWKYTWAVPAVGMSNCKWSGTGEC LKDLETKSSNYNL
Subjt:  SESMPNSETEEDTESDRSDTDQENELEVGLHGDPSTSDITSSFNKHMEHKLSKEEVENFPKMKWKYTWAVPAVGMSNCKWSGTGECLLKDLETKSSNYNL

Query:  KQRLYEHWLDVYKTSGGTDFHSSRQRFFFSL
        KQRLYEHWLDVYKTSGGTDFHSSRQRFFFSL
Subjt:  KQRLYEHWLDVYKTSGGTDFHSSRQRFFFSL

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BWL1 U3 small nucleolar RNA-associated protein 25 isoform X1

5.0e-89

80.52

Show/hide

Query:  MVKQLVRKRGASEAEELEVFKEQSNYDNLLMQLQSCNKDVAASCMKRQRQEEGRSDTEDDEDSCPESSSALEEEEEEEEEEEEEGTDDESPKSSSLGNNM
        MVKQLVRKR   EAEELEVF EQSNY+NLLMQLQSCNKDVAASCMKRQRQ EG+SDTEDDED C ESSSALEEE EEEEEEEEE TDDES +S SLGN+M
Subjt:  MVKQLVRKRGASEAEELEVFKEQSNYDNLLMQLQSCNKDVAASCMKRQRQEEGRSDTEDDEDSCPESSSALEEEEEEEEEEEEEGTDDESPKSSSLGNNM

Query:  SESMPNSETEEDTESDRSDTDQENELEVGLHGDPSTSDITSSFNKHMEHKLSKEEVENFPKMKWKYTWAVPAVGMSNCKWSGTGECLLKDLETKSSNYNL
         E + N ETE+D  +D SDTDQENELE   H  PSTSDITSSFNKHME KLS+ EVENF KMKWKYTWAVPAVGM NCKWSGTGEC LK+L+ K S+Y+L
Subjt:  SESMPNSETEEDTESDRSDTDQENELEVGLHGDPSTSDITSSFNKHMEHKLSKEEVENFPKMKWKYTWAVPAVGMSNCKWSGTGECLLKDLETKSSNYNL

Query:  KQRLYEHWLDVYKTSGGTDFHSSRQRFFFSL
        K RLYEHWLD YK+SGGTDFHSSRQRFFFSL
Subjt:  KQRLYEHWLDVYKTSGGTDFHSSRQRFFFSL

A0A1S3BXS4 U3 small nucleolar RNA-associated protein 25 isoform X2

9.4e-88

80.52

Show/hide

Query:  MVKQLVRKRGASEAEELEVFKEQSNYDNLLMQLQSCNKDVAASCMKRQRQEEGRSDTEDDEDSCPESSSALEEEEEEEEEEEEEGTDDESPKSSSLGNNM
        MVKQLVRKR   EAEELEVF EQSNY+NLLMQLQSCNKDVAASCMKRQRQ EG+SDTEDDED C ESSSALEEE EEEEEEEEE TDDES +S SLGN+M
Subjt:  MVKQLVRKRGASEAEELEVFKEQSNYDNLLMQLQSCNKDVAASCMKRQRQEEGRSDTEDDEDSCPESSSALEEEEEEEEEEEEEGTDDESPKSSSLGNNM

Query:  SESMPNSETEEDTESDRSDTDQENELEVGLHGDPSTSDITSSFNKHMEHKLSKEEVENFPKMKWKYTWAVPAVGMSNCKWSGTGECLLKDLETKSSNYNL
         E + N ETE+D  +D SDTDQENELE   H  PSTSDITSSFNKHME KLS+ EVENF KMKWKYTWAVPAVGM NCKWSGTGEC LK+L+ K S+Y+L
Subjt:  SESMPNSETEEDTESDRSDTDQENELEVGLHGDPSTSDITSSFNKHMEHKLSKEEVENFPKMKWKYTWAVPAVGMSNCKWSGTGECLLKDLETKSSNYNL

Query:  KQRLYEHWLDVYKTSGGTDFHSSRQRFFFSL
        K RLYEHWLD YK+SGGTDFHSSRQRFFFSL
Subjt:  KQRLYEHWLDVYKTSGGTDFHSSRQRFFFSL

A0A6J1EPX7 U3 small nucleolar RNA-associated protein 25 isoform X2

2.8e-116

98.27

Show/hide

Query:  MVKQLVRKRGASEAEELEVFKEQSNYDNLLMQLQSCNKDVAASCMKRQRQEEGRSDTEDDEDSCPESSSALEEEEEEEEEEEEEGTDDESPKSSSLGNNM
        MVKQLVRKRGASEAEELEVFKEQSNYDNLLMQLQSCNKDVAASCMKRQRQEEGRSDTEDDEDSCPESSSAL   EEEEEEEEEEGTDDESPKSSSLGNNM
Subjt:  MVKQLVRKRGASEAEELEVFKEQSNYDNLLMQLQSCNKDVAASCMKRQRQEEGRSDTEDDEDSCPESSSALEEEEEEEEEEEEEGTDDESPKSSSLGNNM

Query:  SESMPNSETEEDTESDRSDTDQENELEVGLHGDPSTSDITSSFNKHMEHKLSKEEVENFPKMKWKYTWAVPAVGMSNCKWSGTGECLLKDLETKSSNYNL
        SE MPNSETEEDTESDRSDTDQENELEVGLHGDPSTSDITSSFNKHMEHKLSKEEVENFPKMKWKYTWAVPAVGMSNCKWSGTGECLLKDLETKSSNYNL
Subjt:  SESMPNSETEEDTESDRSDTDQENELEVGLHGDPSTSDITSSFNKHMEHKLSKEEVENFPKMKWKYTWAVPAVGMSNCKWSGTGECLLKDLETKSSNYNL

Query:  KQRLYEHWLDVYKTSGGTDFHSSRQRFFFSL
        KQRLYEHWLDVYKTSGGTDFHSSRQRFFFSL
Subjt:  KQRLYEHWLDVYKTSGGTDFHSSRQRFFFSL

A0A6J1EQL5 U3 small nucleolar RNA-associated protein 25 isoform X1

1.0e-118

99.57

Show/hide

Query:  MVKQLVRKRGASEAEELEVFKEQSNYDNLLMQLQSCNKDVAASCMKRQRQEEGRSDTEDDEDSCPESSSALEEEEEEEEEEEEEGTDDESPKSSSLGNNM
        MVKQLVRKRGASEAEELEVFKEQSNYDNLLMQLQSCNKDVAASCMKRQRQEEGRSDTEDDEDSCPESSSALEEEEEEEEEEEEEGTDDESPKSSSLGNNM
Subjt:  MVKQLVRKRGASEAEELEVFKEQSNYDNLLMQLQSCNKDVAASCMKRQRQEEGRSDTEDDEDSCPESSSALEEEEEEEEEEEEEGTDDESPKSSSLGNNM

Query:  SESMPNSETEEDTESDRSDTDQENELEVGLHGDPSTSDITSSFNKHMEHKLSKEEVENFPKMKWKYTWAVPAVGMSNCKWSGTGECLLKDLETKSSNYNL
        SE MPNSETEEDTESDRSDTDQENELEVGLHGDPSTSDITSSFNKHMEHKLSKEEVENFPKMKWKYTWAVPAVGMSNCKWSGTGECLLKDLETKSSNYNL
Subjt:  SESMPNSETEEDTESDRSDTDQENELEVGLHGDPSTSDITSSFNKHMEHKLSKEEVENFPKMKWKYTWAVPAVGMSNCKWSGTGECLLKDLETKSSNYNL

Query:  KQRLYEHWLDVYKTSGGTDFHSSRQRFFFSL
        KQRLYEHWLDVYKTSGGTDFHSSRQRFFFSL
Subjt:  KQRLYEHWLDVYKTSGGTDFHSSRQRFFFSL

A0A6J1HJW3 U3 small nucleolar RNA-associated protein 25 isoform X1

1.3e-113

95.67

Show/hide

Query:  MVKQLVRKRGASEAEELEVFKEQSNYDNLLMQLQSCNKDVAASCMKRQRQEEGRSDTEDDEDSCPESSSALEEEEEEEEEEEEEGTDDESPKSSSLGNNM
        MVKQLVRKRGASEAEELEVFKEQSNYDNLLMQLQSCNKDVAASCMKRQRQEEGRSDTEDDEDSCPESSSAL      EEEEEEEGTDDESPKSSSLGNNM
Subjt:  MVKQLVRKRGASEAEELEVFKEQSNYDNLLMQLQSCNKDVAASCMKRQRQEEGRSDTEDDEDSCPESSSALEEEEEEEEEEEEEGTDDESPKSSSLGNNM

Query:  SESMPNSETEEDTESDRSDTDQENELEVGLHGDPSTSDITSSFNKHMEHKLSKEEVENFPKMKWKYTWAVPAVGMSNCKWSGTGECLLKDLETKSSNYNL
        SE MPN+ETEEDTESDRSDTDQENELEVG HGDPSTSDITSSFNKHMEHKLSKEEVENFPKMKWKYTWAVPAVGMSNCKWSGTGEC LKDLETKSSNYNL
Subjt:  SESMPNSETEEDTESDRSDTDQENELEVGLHGDPSTSDITSSFNKHMEHKLSKEEVENFPKMKWKYTWAVPAVGMSNCKWSGTGECLLKDLETKSSNYNL

Query:  KQRLYEHWLDVYKTSGGTDFHSSRQRFFFSL
        KQRLYEHWLDVYKTSGGTDFHSSRQRFFFSL
Subjt:  KQRLYEHWLDVYKTSGGTDFHSSRQRFFFSL

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G17690.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Digestive organ expansion factor, predicted (InterPro:IPR010678); Has 25006 Blast hits to 13379 proteins in 904 species: Archae - 102; Bacteria - 5571; Metazoa - 7448; Fungi - 3168; Plants - 1056; Viruses - 466; Other Eukaryotes - 7195 (source: NCBI BLink).

3.2e-32

41.63

Show/hide

Query:  EAE-ELEVFKEQSNYDNLLMQLQSCNKDVAASCMKRQRQEEGRSDTEDDEDSCPESSSALEEEEEEEEEEEEEGTDD------ESPKS-----SSLGNNM
        EAE E  V++E + Y NLL+ L S NK VA    +RQR+EEG+SDTE+DED            +E+E+EEE  G+DD      E  KS      +LG   
Subjt:  EAE-ELEVFKEQSNYDNLLMQLQSCNKDVAASCMKRQRQEEGRSDTEDDEDSCPESSSALEEEEEEEEEEEEEGTDD------ESPKS-----SSLGNNM

Query:  SESMPNSETE-EDTESDRSDTDQE-NELEVGLHGDPSTSDITSSFNKHMEHKLSKEEVENFPKMKWKYTWAVPAVGMSNCKWSGTGECLLKDLETKSSNY
         ++  +++ + E+ + D  +TD+E +EL          S   S+F++H+ HKLS EEVE  PK KWK+ W  PA  M NCKW GT E  L  +++  + Y
Subjt:  SESMPNSETE-EDTESDRSDTDQE-NELEVGLHGDPSTSDITSSFNKHMEHKLSKEEVENFPKMKWKYTWAVPAVGMSNCKWSGTGECLLKDLETKSSNY

Query:  NLKQRLYEHWLDVYKTSGGTDFHSSRQRFFFSL
         LK +LY HWL +YK  GG D  SS++R FFS+
Subjt:  NLKQRLYEHWLDVYKTSGGTDFHSSRQRFFFSL

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGTGAAGCAGTTAGTTCGTAAACGAGGAGCCAGTGAGGCCGAGGAACTTGAAGTTTTCAAAGAGCAATCAAACTATGATAATTTGTTAATGCAATTACAATCATGTAA
TAAGGATGTTGCTGCTTCATGTATGAAAAGACAAAGACAAGAAGAAGGCAGAAGTGACACAGAGGATGATGAGGATAGCTGTCCTGAATCTTCTAGTGCATTAGAGGAGG
AGGAGGAGGAGGAAGAAGAGGAAGAAGAGGAAGGGACTGATGATGAGTCACCTAAAAGTTCATCTTTGGGGAACAATATGTCTGAGTCAATGCCAAACAGCGAAACTGAA
GAAGACACTGAATCTGATAGGTCTGACACAGATCAGGAAAATGAGCTTGAAGTTGGTTTGCATGGTGACCCTTCTACATCAGATATAACTAGTTCTTTTAACAAACACAT
GGAGCACAAGTTATCAAAAGAAGAGGTTGAGAATTTCCCTAAAATGAAATGGAAATATACATGGGCGGTTCCTGCAGTAGGGATGTCTAACTGCAAGTGGTCAGGGACCG
GAGAGTGCCTTCTAAAGGATTTAGAAACCAAATCTAGTAATTACAATCTTAAGCAAAGGTTATATGAGCATTGGTTGGATGTGTACAAGACATCTGGAGGCACTGACTTT
CATTCGTCGAGACAAAGATTTTTCTTTTCCCTTTATGAGGACTCAAAGTTGGATGAAACAGAAAACATAGGTAAGATGCAGGAGTAA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MVKQLVRKRGASEAEELEVFKEQSNYDNLLMQLQSCNKDVAASCMKRQRQEEGRSDTEDDEDSCPESSSALEEEEEEEEEEEEEGTDDESPKSSSLGNNMSESMPNSETE
EDTESDRSDTDQENELEVGLHGDPSTSDITSSFNKHMEHKLSKEEVENFPKMKWKYTWAVPAVGMSNCKWSGTGECLLKDLETKSSNYNLKQRLYEHWLDVYKTSGGTDF
HSSRQRFFFSLYEDSKLDETENIGKMQE

Carg09042 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome