; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg09216 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg09216
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionprotein LOW PSII ACCUMULATION 2, chloroplastic
Genome locationCarg_Chr05:2531368..2534593
RNA-Seq ExpressionCarg09216
SyntenyCarg09216
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6600161.1 Protein LOW PSII ACCUMULATION 2, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]6.4e-1139.16Show/hide
Query:  FPLRLKIIIKSQNPSESRKPIRKLSTMLSSDPRLLKGSARYRLNRTTSSKIKSQRLHISKGKQKGKRQRASIIRRSP-----------------------
        FP +LK IIKSQNPSES KPI K            +G        TTSSK  S +   SKGKQKGKRQRASIIRRSP                       
Subjt:  FPLRLKIIIKSQNPSESRKPIRKLSTMLSSDPRLLKGSARYRLNRTTSSKIKSQRLHISKGKQKGKRQRASIIRRSP-----------------------

Query:  ------------------------FLTEKWDKVLRQILCSILYPTVSLLCGWNCCIRSSKYLQNEK
                                FL EKWDK   + L     PTVSL          SKYLQNEK
Subjt:  ------------------------FLTEKWDKVLRQILCSILYPTVSLLCGWNCCIRSSKYLQNEK

KAG7029624.1 hypothetical protein SDJN02_07964, partial [Cucurbita argyrosperma subsp. argyrosperma]4.4e-97100Show/hide
Query:  MSSYKLLYAKCFAQPYGEKLCPSAEDPSFKKAQNCLENKSIRYRHRRLPKNHETRIIFQNTSPFPLRLKIIIKSQNPSESRKPIRKLSTMLSSDPRLLKG
        MSSYKLLYAKCFAQPYGEKLCPSAEDPSFKKAQNCLENKSIRYRHRRLPKNHETRIIFQNTSPFPLRLKIIIKSQNPSESRKPIRKLSTMLSSDPRLLKG
Subjt:  MSSYKLLYAKCFAQPYGEKLCPSAEDPSFKKAQNCLENKSIRYRHRRLPKNHETRIIFQNTSPFPLRLKIIIKSQNPSESRKPIRKLSTMLSSDPRLLKG

Query:  SARYRLNRTTSSKIKSQRLHISKGKQKGKRQRASIIRRSPFLTEKWDKVLRQILCSILYPTVSLLCGWNCCIRSSKYLQNEKA
        SARYRLNRTTSSKIKSQRLHISKGKQKGKRQRASIIRRSPFLTEKWDKVLRQILCSILYPTVSLLCGWNCCIRSSKYLQNEKA
Subjt:  SARYRLNRTTSSKIKSQRLHISKGKQKGKRQRASIIRRSPFLTEKWDKVLRQILCSILYPTVSLLCGWNCCIRSSKYLQNEKA

XP_022941727.1 protein LOW PSII ACCUMULATION 2, chloroplastic [Cucurbita moschata]6.4e-1139.16Show/hide
Query:  FPLRLKIIIKSQNPSESRKPIRKLSTMLSSDPRLLKGSARYRLNRTTSSKIKSQRLHISKGKQKGKRQRASIIRRSP-----------------------
        FP +LK IIKSQNPSES KPI K            +G        TTSSK  S +   SKGKQKGKRQRASIIRRSP                       
Subjt:  FPLRLKIIIKSQNPSESRKPIRKLSTMLSSDPRLLKGSARYRLNRTTSSKIKSQRLHISKGKQKGKRQRASIIRRSP-----------------------

Query:  ------------------------FLTEKWDKVLRQILCSILYPTVSLLCGWNCCIRSSKYLQNEK
                                FL EKWDK   + L     PTVSL          SKYLQNEK
Subjt:  ------------------------FLTEKWDKVLRQILCSILYPTVSLLCGWNCCIRSSKYLQNEK

XP_022973018.1 protein LOW PSII ACCUMULATION 2, chloroplastic [Cucurbita maxima]3.5e-0937.35Show/hide
Query:  FPLRLKIIIKSQNPSESRKPIRKLSTMLSSDPRLLKGSARYRLNRTTSSKIKSQRLHISKGKQKGKRQRASIIRRSP-----------------------
        FP + K IIKSQ+PSES KPI K     +      +G        TTSSK  S +   SKGKQKGKRQRASIIRRSP                       
Subjt:  FPLRLKIIIKSQNPSESRKPIRKLSTMLSSDPRLLKGSARYRLNRTTSSKIKSQRLHISKGKQKGKRQRASIIRRSP-----------------------

Query:  ------------------------FLTEKWDKVLRQILCSILYPTVSLLCGWNCCIRSSKYLQNEK
                                FL E WDK   + L     PTVSL          SKYLQNEK
Subjt:  ------------------------FLTEKWDKVLRQILCSILYPTVSLLCGWNCCIRSSKYLQNEK

XP_023554492.1 protein LOW PSII ACCUMULATION 2, chloroplastic [Cucurbita pepo subsp. pepo]6.4e-1139.16Show/hide
Query:  FPLRLKIIIKSQNPSESRKPIRKLSTMLSSDPRLLKGSARYRLNRTTSSKIKSQRLHISKGKQKGKRQRASIIRRSP-----------------------
        FP +LK IIKSQNPSES KPI K            +G        TTSSK  S +   SKGKQKGKRQRASIIRRSP                       
Subjt:  FPLRLKIIIKSQNPSESRKPIRKLSTMLSSDPRLLKGSARYRLNRTTSSKIKSQRLHISKGKQKGKRQRASIIRRSP-----------------------

Query:  ------------------------FLTEKWDKVLRQILCSILYPTVSLLCGWNCCIRSSKYLQNEK
                                FL EKWDK   + L     PTVSL          SKYLQNEK
Subjt:  ------------------------FLTEKWDKVLRQILCSILYPTVSLLCGWNCCIRSSKYLQNEK

TrEMBL top hitse value%identityAlignment
A0A0A0L8E3 Uncharacterized protein1.5e-0534.91Show/hide
Query:  FPLRLKIIIKSQNPSESRKPIRKL---STMLSSDPRLLKGSARYRLNRTTSSKIKSQRLHISKGKQKGKRQRASIIRRSP--------------------
        F  + K IIKSQNPSES KPI K+   + + +S P+   GS+  +   T+ S  KS        KQKGKRQRASIIRRSP                    
Subjt:  FPLRLKIIIKSQNPSESRKPIRKL---STMLSSDPRLLKGSARYRLNRTTSSKIKSQRLHISKGKQKGKRQRASIIRRSP--------------------

Query:  ---------------------------FLTEKWDKVLRQILCSILYPTVSLLCGWNCCIRSSKYLQNEK
                                   FL E+WDK   + L     PTVSL           KYLQNEK
Subjt:  ---------------------------FLTEKWDKVLRQILCSILYPTVSLLCGWNCCIRSSKYLQNEK

A0A1S3AXX6 protein LOW PSII ACCUMULATION 2, chloroplastic5.6e-0533.71Show/hide
Query:  FPLRLKIIIKSQNPSESRKPIRKL---------STMLSSDPRLLKGSARYRLNRTTSSKIKSQRLHISKGKQKGKRQRASIIRRSP--------------
        F  + K IIKSQNPSES KPI K+         S   +S P+   GS+  +   T+ S  KS        KQKGKRQRASIIRRSP              
Subjt:  FPLRLKIIIKSQNPSESRKPIRKL---------STMLSSDPRLLKGSARYRLNRTTSSKIKSQRLHISKGKQKGKRQRASIIRRSP--------------

Query:  ---------------------------------FLTEKWDKVLRQILCSILYPTVSLLCGWNCCIRSSKYLQNEK
                                         FL E+WD++  + L     PTVSL           KYLQNEK
Subjt:  ---------------------------------FLTEKWDKVLRQILCSILYPTVSLLCGWNCCIRSSKYLQNEK

A0A5A7VJY0 Protein LOW PSII ACCUMULATION 27.3e-0532.75Show/hide
Query:  FPLRLKIIIKSQNPSESRKPIRKLSTMLSSDPRLLKGSARYRLNRTTSSKIKSQRLHISKG-----KQKGKRQRASIIRRSP------------------
        F  + K IIKSQNPSES KPI K    +  D  +   S  Y  +         Q    SK      KQKGKRQRASIIRRSP                  
Subjt:  FPLRLKIIIKSQNPSESRKPIRKLSTMLSSDPRLLKGSARYRLNRTTSSKIKSQRLHISKG-----KQKGKRQRASIIRRSP------------------

Query:  -----------------------------FLTEKWDKVLRQILCSILYPTVSLLCGWNCCIRSSKYLQNEK
                                     FL E+WD++  + L     PTVSL           KYLQNEK
Subjt:  -----------------------------FLTEKWDKVLRQILCSILYPTVSLLCGWNCCIRSSKYLQNEK

A0A6J1FNA7 protein LOW PSII ACCUMULATION 2, chloroplastic3.1e-1139.16Show/hide
Query:  FPLRLKIIIKSQNPSESRKPIRKLSTMLSSDPRLLKGSARYRLNRTTSSKIKSQRLHISKGKQKGKRQRASIIRRSP-----------------------
        FP +LK IIKSQNPSES KPI K            +G        TTSSK  S +   SKGKQKGKRQRASIIRRSP                       
Subjt:  FPLRLKIIIKSQNPSESRKPIRKLSTMLSSDPRLLKGSARYRLNRTTSSKIKSQRLHISKGKQKGKRQRASIIRRSP-----------------------

Query:  ------------------------FLTEKWDKVLRQILCSILYPTVSLLCGWNCCIRSSKYLQNEK
                                FL EKWDK   + L     PTVSL          SKYLQNEK
Subjt:  ------------------------FLTEKWDKVLRQILCSILYPTVSLLCGWNCCIRSSKYLQNEK

A0A6J1IBT8 protein LOW PSII ACCUMULATION 2, chloroplastic1.7e-0937.35Show/hide
Query:  FPLRLKIIIKSQNPSESRKPIRKLSTMLSSDPRLLKGSARYRLNRTTSSKIKSQRLHISKGKQKGKRQRASIIRRSP-----------------------
        FP + K IIKSQ+PSES KPI K     +      +G        TTSSK  S +   SKGKQKGKRQRASIIRRSP                       
Subjt:  FPLRLKIIIKSQNPSESRKPIRKLSTMLSSDPRLLKGSARYRLNRTTSSKIKSQRLHISKGKQKGKRQRASIIRRSP-----------------------

Query:  ------------------------FLTEKWDKVLRQILCSILYPTVSLLCGWNCCIRSSKYLQNEK
                                FL E WDK   + L     PTVSL          SKYLQNEK
Subjt:  ------------------------FLTEKWDKVLRQILCSILYPTVSLLCGWNCCIRSSKYLQNEK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCAGTTATAAGCTACTGTACGCCAAATGTTTTGCGCAACCATATGGGGAGAAGCTTTGTCCATCAGCGGAAGATCCTTCTTTCAAGAAAGCACAGAACTGCCTTGA
GAACAAGAGTATTCGTTACCGACATAGGAGGCTACCAAAGAACCATGAAACCCGTATCATCTTCCAAAATACCTCTCCATTCCCTCTAAGGCTTAAAATCATCATCAAAT
CGCAGAACCCATCGGAATCGAGAAAGCCCATTCGAAAACTGTCGACGATGCTCAGTTCGGACCCTCGTCTGCTCAAGGGTTCGGCTCGTTATCGTCTCAATCGGACGACT
TCAAGCAAAATCAAGTCCCAAAGGCTACACATCTCTAAGGGAAAGCAGAAGGGTAAGCGGCAAAGGGCATCGATTATTCGGCGCTCACCGTTTCTTACAGAGAAGTGGGA
TAAGGTTCTTCGTCAAATATTGTGTTCCATCCTTTACCCAACCGTCTCGCTGTTGTGTGGCTGGAACTGTTGCATACGGAGTTCGAAGTATCTTCAGAATGAGAAAGCTT
AA
mRNA sequenceShow/hide mRNA sequence
ATGAGCAGTTATAAGCTACTGTACGCCAAATGTTTTGCGCAACCATATGGGGAGAAGCTTTGTCCATCAGCGGAAGATCCTTCTTTCAAGAAAGCACAGAACTGCCTTGA
GAACAAGAGTATTCGTTACCGACATAGGAGGCTACCAAAGAACCATGAAACCCGTATCATCTTCCAAAATACCTCTCCATTCCCTCTAAGGCTTAAAATCATCATCAAAT
CGCAGAACCCATCGGAATCGAGAAAGCCCATTCGAAAACTGTCGACGATGCTCAGTTCGGACCCTCGTCTGCTCAAGGGTTCGGCTCGTTATCGTCTCAATCGGACGACT
TCAAGCAAAATCAAGTCCCAAAGGCTACACATCTCTAAGGGAAAGCAGAAGGGTAAGCGGCAAAGGGCATCGATTATTCGGCGCTCACCGTTTCTTACAGAGAAGTGGGA
TAAGGTTCTTCGTCAAATATTGTGTTCCATCCTTTACCCAACCGTCTCGCTGTTGTGTGGCTGGAACTGTTGCATACGGAGTTCGAAGTATCTTCAGAATGAGAAAGCTT
AAAAGGTGATAATCATAATTTTAATCTTTTTGATTGATGTCTGCATCTGCTATGGTGACCTGAAATGTTCAAGTGCCTATTGATTGTGTTTATATACTAAGTATGTTCAT
TTGAGTGAAAAACCGAGGATGAATTTTCTTTTAGCTCAAAGGTAGAATGAGAGATCTGTTGTTGATCTCAGAAACACCTTGCCATCAATTTATTAGTTTCTCTGGGCTTT
AGTAATATGTGTTCGATGGCTCGAAGATCCTTCTGTTGTGTATATGGGCATGTCCCTTTTGTTTCTGATTTTTCATCTCCTTTTCTTCTTTTCCAAACAATCAGAGAGGA
AGTCACAAAAGCAGGAGGCCCCATCTAAATTGATATAAAAAAGTAGAAAAATCAGTAGAACATGTATAATTGTGAATAAGAGAAGCAGTACATCTTTCTTTCCTTTTCCT
GTCCTTTCCTTTCCTTTCCTTTCCTTTCTTTCAGCCACCACTTGAAATAACTTTAGAAAACAAGAGTAATAAGGAAGCAGAGTAACATGGTCAGCCGAGGGTCTGTAAAT
AAGTGTGCACAAACTGATACCACAGAAAACTGAAATTTTGAAACACCTTTTTTGTGACCCTCCTGCAGATCGAAGGGACCTAAATGGTCCAGAAAAGAAGTGATACAGAA
GGTTGTTTGCGTGCTGAGGACACTGAAATAAGCAGTGTTGTTTAGTGATGACTCAAAAGCAGAGTGTGTTTGGTTTTGTTGTGTGTTGCCGCTCTTGATCCTTCTCTTCA
TTAGTTAAAAAAATTGATTATTGTGTTGTTTGGTAGCTCCATTCCATTTATTAGGTAATATAATTGGAAAAGGGCCTCAGAAGGGTGAGATGAGGAATTGGAGAATGCTC
ACTCTAGGACAGCGACCACAAAATTCGATTCATCGTCTCTATAATTTACTCTCTCTAATACTTCTT
Protein sequenceShow/hide protein sequence
MSSYKLLYAKCFAQPYGEKLCPSAEDPSFKKAQNCLENKSIRYRHRRLPKNHETRIIFQNTSPFPLRLKIIIKSQNPSESRKPIRKLSTMLSSDPRLLKGSARYRLNRTT
SSKIKSQRLHISKGKQKGKRQRASIIRRSPFLTEKWDKVLRQILCSILYPTVSLLCGWNCCIRSSKYLQNEKA