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Carg09257 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg09257
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptiontruncated transcription factor CAULIFLOWER A-like
Genome locationCarg_Chr05:2292789..2293984
RNA-Seq ExpressionCarg09257
SyntenyCarg09257
Gene Ontology termsGO:0006357 - regulation of transcription by RNA polymerase II (biological process)
GO:0005634 - nucleus (cellular component)
GO:0000977 - RNA polymerase II regulatory region sequence-specific DNA binding (molecular function)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR002487 - Transcription factor, K-box


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7029584.1 Floral homeotic protein APETALA 1 C, partial [Cucurbita argyrosperma subsp. argyrosperma]3.6e-61100Show/hide
Query:  MEKILERYERYSFVGKQQTAASISKFSHEDLTLDHYMGEDLDSMSVQELHNLEQQMDTALKHVRSRKERTIQEQNSLLAKQKNKIKEKEKSVAMAEEAEW
        MEKILERYERYSFVGKQQTAASISKFSHEDLTLDHYMGEDLDSMSVQELHNLEQQMDTALKHVRSRKERTIQEQNSLLAKQKNKIKEKEKSVAMAEEAEW
Subjt:  MEKILERYERYSFVGKQQTAASISKFSHEDLTLDHYMGEDLDSMSVQELHNLEQQMDTALKHVRSRKERTIQEQNSLLAKQKNKIKEKEKSVAMAEEAEW

Query:  EEQQHHCYNALSFLYQSAPNHPSLNIG
        EEQQHHCYNALSFLYQSAPNHPSLNIG
Subjt:  EEQQHHCYNALSFLYQSAPNHPSLNIG

XP_022951531.1 truncated transcription factor CAULIFLOWER A-like [Cucurbita moschata]1.0e-3663.69Show/hide
Query:  MEKILERYERYSFVGKQQTAASISKFSHEDLTLD----------------HYMGEDLDSMSVQELHNLEQQMDTALKHVRS--------------RKERT
        MEKILERYERYS+VG+QQ AA+ S+FS E+ TL+                HYMGEDLDS+SV+EL NLEQQ+DTALKHVRS              RKER 
Subjt:  MEKILERYERYSFVGKQQTAASISKFSHEDLTLD----------------HYMGEDLDSMSVQELHNLEQQMDTALKHVRS--------------RKERT

Query:  IQEQNSLLAKQKNKIKEKEKSVAMAEEAEWEEQQHHCYNALSFLYQSAPNHPSLNIG
        IQEQN+LLAKQ   IKEKEKSVAMA++AEWE+QQ H YNALSFL+ SAP HPSLNIG
Subjt:  IQEQNSLLAKQKNKIKEKEKSVAMAEEAEWEEQQHHCYNALSFLYQSAPNHPSLNIG

XP_023002154.1 truncated transcription factor CAULIFLOWER A-like [Cucurbita maxima]3.0e-3663.06Show/hide
Query:  MEKILERYERYSFVGKQQTAASISKFSHEDLTLD----------------HYMGEDLDSMSVQELHNLEQQMDTALKHVRS--------------RKERT
        MEKILERYERYS+VG+QQ AA+ S+FS E+ TL+                HYMGEDLDS+SV+EL NLEQQ+DTALKHVRS              RKER 
Subjt:  MEKILERYERYSFVGKQQTAASISKFSHEDLTLD----------------HYMGEDLDSMSVQELHNLEQQMDTALKHVRS--------------RKERT

Query:  IQEQNSLLAKQKNKIKEKEKSVAMAEEAEWEEQQHHCYNALSFLYQSAPNHPSLNIG
        IQEQN+LLAKQ   IKEKEKS AMA++AEWE+QQ H YNALSFL+ SAP HPSLNIG
Subjt:  IQEQNSLLAKQKNKIKEKEKSVAMAEEAEWEEQQHHCYNALSFLYQSAPNHPSLNIG

XP_023547090.1 truncated transcription factor CAULIFLOWER A-like [Cucurbita pepo subsp. pepo]1.7e-4773.25Show/hide
Query:  MEKILERYERYSFVGKQQTAASISKFSHEDLTLD----------------HYMGEDLDSMSVQELHNLEQQMDTALKHVRS--------------RKERT
        MEKILERYERYSFVGKQQTAAS+SKFS EDLTL+                HYMGEDLDS+SV+ELHNLE+QMDTALKHVRS              RKERT
Subjt:  MEKILERYERYSFVGKQQTAASISKFSHEDLTLD----------------HYMGEDLDSMSVQELHNLEQQMDTALKHVRS--------------RKERT

Query:  IQEQNSLLAKQKNKIKEKEKSVAMAEEAEWEEQQHHCYNALSFLYQSAPNHPSLNIG
        IQEQNSLLAK+   IKEKEKSVAMAEEAEWEEQQHHCYNALSFLYQSAP+ PSLNIG
Subjt:  IQEQNSLLAKQKNKIKEKEKSVAMAEEAEWEEQQHHCYNALSFLYQSAPNHPSLNIG

XP_038886329.1 truncated transcription factor CAULIFLOWER A-like [Benincasa hispida]6.5e-3965.61Show/hide
Query:  MEKILERYERYSFVGKQQTAASISKFSHEDLTLD----------------HYMGEDLDSMSVQELHNLEQQMDTALKHVRS--------------RKERT
        MEKILERYERYS+VG+QQ AAS S+FSHE+ TL+                HYMGEDLDS+SV+EL NLEQQ+DTALKHVRS              RKER 
Subjt:  MEKILERYERYSFVGKQQTAASISKFSHEDLTLD----------------HYMGEDLDSMSVQELHNLEQQMDTALKHVRS--------------RKERT

Query:  IQEQNSLLAKQKNKIKEKEKSVAMAEEAEWEEQQHHCYNALSFLYQSAPNHPSLNIG
        IQEQN+LLAKQ   IKEKEKSVAMA++AEWE+QQHH YNALSFL+ SAP HPSLNIG
Subjt:  IQEQNSLLAKQKNKIKEKEKSVAMAEEAEWEEQQHHCYNALSFLYQSAPNHPSLNIG

TrEMBL top hitse value%identityAlignment
A0A0A0KGY7 K-box domain-containing protein1.7e-3259.24Show/hide
Query:  MEKILERYERYSFVGKQQTAASISKFSHEDLTLD----------------HYMGEDLDSMSVQELHNLEQQMDTALKHVRSRKE--------------RT
        MEKILERYERYSFVG+QQ AAS S+FS+E+ TL+                HYMGEDLDS+SV+EL NLEQQ+DTALKHVR+RK               R 
Subjt:  MEKILERYERYSFVGKQQTAASISKFSHEDLTLD----------------HYMGEDLDSMSVQELHNLEQQMDTALKHVRSRKE--------------RT

Query:  IQEQNSLLAKQKNKIKEKEKSVAMAEEAEWEEQQHHCYNALSFLYQSAPNHPSLNIG
        I+E N  LAKQ   IKEKEKSVA+A++AEWE QQ   YNALSFL+   P HPSLNIG
Subjt:  IQEQNSLLAKQKNKIKEKEKSVAMAEEAEWEEQQHHCYNALSFLYQSAPNHPSLNIG

A0A1S3BCQ3 truncated transcription factor CAULIFLOWER A1.1e-3460.51Show/hide
Query:  MEKILERYERYSFVGKQQTAASISKFSHEDLTLD----------------HYMGEDLDSMSVQELHNLEQQMDTALKHVRSRKE--------------RT
        MEKILERYERYSFVG+QQ AAS S FSHE+ TL+                HY+GEDLDS+SV+EL NLEQQ+DTALKHVRSRK               RT
Subjt:  MEKILERYERYSFVGKQQTAASISKFSHEDLTLD----------------HYMGEDLDSMSVQELHNLEQQMDTALKHVRSRKE--------------RT

Query:  IQEQNSLLAKQKNKIKEKEKSVAMAEEAEWEEQQHHCYNALSFLYQSAPNHPSLNIG
        I+E N+ LAK+   IKEKEKSVA+A++AEWE QQHH Y+ALSFL+   P HPSLNIG
Subjt:  IQEQNSLLAKQKNKIKEKEKSVAMAEEAEWEEQQHHCYNALSFLYQSAPNHPSLNIG

A0A6J1BSN0 truncated transcription factor CAULIFLOWER A-like3.1e-3460.38Show/hide
Query:  MEKILERYERYSFVGKQQTAASISKFSHEDLTLD----------------HYMGEDLDSMSVQELHNLEQQMDTALKHVRS--------------RKERT
        MEKILERYERYS+VG+QQ A S ++FS E+ TL+                HYMGEDLDS+SV+EL NLEQQ+DTALKH+RS              RKER 
Subjt:  MEKILERYERYSFVGKQQTAASISKFSHEDLTLD----------------HYMGEDLDSMSVQELHNLEQQMDTALKHVRS--------------RKERT

Query:  IQEQNSLLAKQKNKIKEKEKSVAMAEEAEWE--EQQHHCYNALSFLYQSAPNHPSLNIG
        IQEQN+LLAKQ   IKEKEKSVAMA++AEWE  +QQHH Y+ALSFL+ + P HPSLNIG
Subjt:  IQEQNSLLAKQKNKIKEKEKSVAMAEEAEWE--EQQHHCYNALSFLYQSAPNHPSLNIG

A0A6J1GHU4 truncated transcription factor CAULIFLOWER A-like5.0e-3763.69Show/hide
Query:  MEKILERYERYSFVGKQQTAASISKFSHEDLTLD----------------HYMGEDLDSMSVQELHNLEQQMDTALKHVRS--------------RKERT
        MEKILERYERYS+VG+QQ AA+ S+FS E+ TL+                HYMGEDLDS+SV+EL NLEQQ+DTALKHVRS              RKER 
Subjt:  MEKILERYERYSFVGKQQTAASISKFSHEDLTLD----------------HYMGEDLDSMSVQELHNLEQQMDTALKHVRS--------------RKERT

Query:  IQEQNSLLAKQKNKIKEKEKSVAMAEEAEWEEQQHHCYNALSFLYQSAPNHPSLNIG
        IQEQN+LLAKQ   IKEKEKSVAMA++AEWE+QQ H YNALSFL+ SAP HPSLNIG
Subjt:  IQEQNSLLAKQKNKIKEKEKSVAMAEEAEWEEQQHHCYNALSFLYQSAPNHPSLNIG

A0A6J1KPM9 truncated transcription factor CAULIFLOWER A-like1.5e-3663.06Show/hide
Query:  MEKILERYERYSFVGKQQTAASISKFSHEDLTLD----------------HYMGEDLDSMSVQELHNLEQQMDTALKHVRS--------------RKERT
        MEKILERYERYS+VG+QQ AA+ S+FS E+ TL+                HYMGEDLDS+SV+EL NLEQQ+DTALKHVRS              RKER 
Subjt:  MEKILERYERYSFVGKQQTAASISKFSHEDLTLD----------------HYMGEDLDSMSVQELHNLEQQMDTALKHVRS--------------RKERT

Query:  IQEQNSLLAKQKNKIKEKEKSVAMAEEAEWEEQQHHCYNALSFLYQSAPNHPSLNIG
        IQEQN+LLAKQ   IKEKEKS AMA++AEWE+QQ H YNALSFL+ SAP HPSLNIG
Subjt:  IQEQNSLLAKQKNKIKEKEKSVAMAEEAEWEEQQHHCYNALSFLYQSAPNHPSLNIG

SwissProt top hitse value%identityAlignment
B4YPV4 Floral homeotic protein APETALA 1 C3.3e-1745.86Show/hide
Query:  MEKILERYERYSFVGKQQTAASI--------------SKFSHEDLTLDHYMGEDLDSMSVQELHNLEQQMDTALKHVRS--------------RKERTIQ
        MEKILERYERYS+  +Q  A                 +K    +    HY+GEDL +MS +EL NLEQQ+DTALKH+RS              RKE+ IQ
Subjt:  MEKILERYERYSFVGKQQTAASI--------------SKFSHEDLTLDHYMGEDLDSMSVQELHNLEQQMDTALKHVRS--------------RKERTIQ

Query:  EQNSLLAKQKNKIKEKEKSVAMAEEAEWEEQQH
        EQNS+L+KQ   IKE+EK V MA++ +W++Q H
Subjt:  EQNSLLAKQKNKIKEKEKSVAMAEEAEWEEQQH

Q6E6S7 Agamous-like MADS-box protein AP16.0e-1946.45Show/hide
Query:  MEKILERYERYSFVGKQQTAA---SISKFSHEDLTLD-----------HYMGEDLDSMSVQELHNLEQQMDTALKHVRS--------------RKERTIQ
        MEKIL+RYERYS+  +Q TA    S   +S E   L            H++GEDLDS+S++EL NLEQQ+DTALKH+RS              RKE+ +Q
Subjt:  MEKILERYERYSFVGKQQTAA---SISKFSHEDLTLD-----------HYMGEDLDSMSVQELHNLEQQMDTALKHVRS--------------RKERTIQ

Query:  EQNSLLAKQKNKIKEKEKSVAMAEEAEWEEQQHHCYNALSFLYQSAPNHPSLNIG
        EQN++LAK+   IKEKEK+V  A++  W EQQ+H  N  SFL       P LN+G
Subjt:  EQNSLLAKQKNKIKEKEKSVAMAEEAEWEEQQHHCYNALSFLYQSAPNHPSLNIG

Q8GTF4 Floral homeotic protein APETALA 1 C3.3e-1745.86Show/hide
Query:  MEKILERYERYSFVGKQQTAASI--------------SKFSHEDLTLDHYMGEDLDSMSVQELHNLEQQMDTALKHVRS--------------RKERTIQ
        MEKILERYERYS+  +Q  A                 +K    +    HY+GEDL +MS +EL NLEQQ+DTALKH+RS              RKE+ IQ
Subjt:  MEKILERYERYSFVGKQQTAASI--------------SKFSHEDLTLDHYMGEDLDSMSVQELHNLEQQMDTALKHVRS--------------RKERTIQ

Query:  EQNSLLAKQKNKIKEKEKSVAMAEEAEWEEQQH
        EQNS+L+KQ   IKE+EK V MA++ +W++Q H
Subjt:  EQNSLLAKQKNKIKEKEKSVAMAEEAEWEEQQH

Q96355 Floral homeotic protein APETALA 1-13.3e-1745.86Show/hide
Query:  MEKILERYERYSFVGKQQTAASI--------------SKFSHEDLTLDHYMGEDLDSMSVQELHNLEQQMDTALKHVRS--------------RKERTIQ
        MEKILERYERYS+  +Q  A                 +K    +    HY+GEDL +MS +EL NLEQQ+DTALKH+RS              RKE+ IQ
Subjt:  MEKILERYERYSFVGKQQTAASI--------------SKFSHEDLTLDHYMGEDLDSMSVQELHNLEQQMDTALKHVRS--------------RKERTIQ

Query:  EQNSLLAKQKNKIKEKEKSVAMAEEAEWEEQQH
        EQNS+L+KQ   IKE+EK V MA++ +W++Q H
Subjt:  EQNSLLAKQKNKIKEKEKSVAMAEEAEWEEQQH

Q96356 Floral homeotic protein APETALA 1-21.2e-1646.62Show/hide
Query:  MEKILERYERYSFVGKQQTAA---SISKFSHE-----------DLTLDHYMGEDLDSMSVQELHNLEQQMDTALKHVRS--------------RKERTIQ
        MEKILERYERYS+  +Q  A    S + +S E           +    HY+GEDL +MS +EL NLEQQ+DTALKH+RS              RKE+ IQ
Subjt:  MEKILERYERYSFVGKQQTAA---SISKFSHE-----------DLTLDHYMGEDLDSMSVQELHNLEQQMDTALKHVRS--------------RKERTIQ

Query:  EQNSLLAKQKNKIKEKEKSVAMAEEAEWEEQQH
        EQNS+L+KQ   IKE+E +V  A++ +W+EQ H
Subjt:  EQNSLLAKQKNKIKEKEKSVAMAEEAEWEEQQH

Arabidopsis top hitse value%identityAlignment
AT1G26310.1 K-box region and MADS-box transcription factor family protein3.8e-1340.34Show/hide
Query:  MEKILERYERYSFVGKQQTAASISKFSHEDLTLD----------------HYMGEDLDSMSVQELHNLEQQMDTALKHVRS--------------RKERT
        MEK+LERYERYS+  +Q  A      +  + +++                HY+GE+L+ MS+++L NLEQQ++TALKH+RS              RKE+ 
Subjt:  MEKILERYERYSFVGKQQTAASISKFSHEDLTLD----------------HYMGEDLDSMSVQELHNLEQQMDTALKHVRS--------------RKERT

Query:  IQEQNSLLAKQKNKIKEKE
        IQE+NS+L KQ   IKE+E
Subjt:  IQEQNSLLAKQKNKIKEKE

AT1G69120.1 K-box region and MADS-box transcription factor family protein1.7e-1643.51Show/hide
Query:  MEKILERYERYSFVGKQQTAASI--------------SKFSHEDLTLDHYMGEDLDSMSVQELHNLEQQMDTALKHVRSR--------------KERTIQ
        MEKILERYERYS+  +Q  A                 +K    +    HY+GEDL +MS +EL NLEQQ+DTALKH+R+R              KE+ IQ
Subjt:  MEKILERYERYSFVGKQQTAASI--------------SKFSHEDLTLDHYMGEDLDSMSVQELHNLEQQMDTALKHVRSR--------------KERTIQ

Query:  EQNSLLAKQKNKIKEKEKSVAMAEEAEWEEQ
        EQNS+L+KQ   IKE+EK +  A++ +W++Q
Subjt:  EQNSLLAKQKNKIKEKEKSVAMAEEAEWEEQ

AT3G30260.1 AGAMOUS-like 793.2e-0733.02Show/hide
Query:  MEKILERYERYSFVGKQ----------QTAASISKFSHE----DLTLDHYMGEDLDSMSVQELHNLEQQMDTALKHVRSRKERTIQEQNSLLAKQKNKIK
        ME+IL+RYER ++ G+           + +   SK          +L H  GE++D +S+++L  +E Q+DTALK  RSRK + + E  + L K++ ++K
Subjt:  MEKILERYERYSFVGKQ----------QTAASISKFSHE----DLTLDHYMGEDLDSMSVQELHNLEQQMDTALKHVRSRKERTIQEQNSLLAKQKNKIK

Query:  EKEKSV
        E +K +
Subjt:  EKEKSV

AT5G60910.1 AGAMOUS-like 85.2e-1036.17Show/hide
Query:  MEKILERYERYSFVGKQQTAASISKFSHEDLTLDH----------------YMGEDLDSMSVQELHNLEQQMDTALKHVRSRKERTIQEQNSLLAKQK--
        ME+ILERY+RY +  KQ     +S+   E+  L+H                +MGEDLDS+S++EL +LE Q+D A+K +RSRK + + E  S L K+   
Subjt:  MEKILERYERYSFVGKQQTAASISKFSHEDLTLDH----------------YMGEDLDSMSVQELHNLEQQMDTALKHVRSRKERTIQEQNSLLAKQK--

Query:  ---------NKIKEKEKSVAMAEEAEWEEQQHHCYNALSFL
                  KIKE+EK     +  + E Q   C N+ S L
Subjt:  ---------NKIKEKEKSVAMAEEAEWEEQQHHCYNALSFL

AT5G60910.2 AGAMOUS-like 85.2e-1036.17Show/hide
Query:  MEKILERYERYSFVGKQQTAASISKFSHEDLTLDH----------------YMGEDLDSMSVQELHNLEQQMDTALKHVRSRKERTIQEQNSLLAKQK--
        ME+ILERY+RY +  KQ     +S+   E+  L+H                +MGEDLDS+S++EL +LE Q+D A+K +RSRK + + E  S L K+   
Subjt:  MEKILERYERYSFVGKQQTAASISKFSHEDLTLDH----------------YMGEDLDSMSVQELHNLEQQMDTALKHVRSRKERTIQEQNSLLAKQK--

Query:  ---------NKIKEKEKSVAMAEEAEWEEQQHHCYNALSFL
                  KIKE+EK     +  + E Q   C N+ S L
Subjt:  ---------NKIKEKEKSVAMAEEAEWEEQQHHCYNALSFL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGAAAATACTCGAACGATACGAGAGATATTCTTTCGTGGGTAAGCAGCAAACCGCAGCTTCTATATCGAAATTTTCTCATGAAGATTTGACACTCGATCATTACAT
GGGAGAAGATTTGGATTCAATGAGCGTCCAAGAACTGCATAACTTGGAACAACAAATGGACACAGCACTGAAACATGTTCGATCCAGAAAAGAAAGAACAATACAGGAGC
AAAATTCCCTACTGGCAAAGCAGAAAAATAAGATCAAGGAGAAGGAGAAGAGTGTAGCAATGGCAGAAGAGGCAGAATGGGAAGAGCAGCAACACCATTGCTACAATGCC
TTGTCTTTCTTGTACCAATCAGCTCCTAATCATCCCTCTCTAAACATTGGGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAGAAAATACTCGAACGATACGAGAGATATTCTTTCGTGGGTAAGCAGCAAACCGCAGCTTCTATATCGAAATTTTCTCATGAAGATTTGACACTCGATCATTACAT
GGGAGAAGATTTGGATTCAATGAGCGTCCAAGAACTGCATAACTTGGAACAACAAATGGACACAGCACTGAAACATGTTCGATCCAGAAAAGAAAGAACAATACAGGAGC
AAAATTCCCTACTGGCAAAGCAGAAAAATAAGATCAAGGAGAAGGAGAAGAGTGTAGCAATGGCAGAAGAGGCAGAATGGGAAGAGCAGCAACACCATTGCTACAATGCC
TTGTCTTTCTTGTACCAATCAGCTCCTAATCATCCCTCTCTAAACATTGGGTAA
Protein sequenceShow/hide protein sequence
MEKILERYERYSFVGKQQTAASISKFSHEDLTLDHYMGEDLDSMSVQELHNLEQQMDTALKHVRSRKERTIQEQNSLLAKQKNKIKEKEKSVAMAEEAEWEEQQHHCYNA
LSFLYQSAPNHPSLNIG