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Carg09273 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg09273
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionCOBW domain-containing protein 1
Genome locationCarg_Chr05:2213134..2214492
RNA-Seq ExpressionCarg09273
SyntenyCarg09273
Gene Ontology termsNA
InterPro domainsIPR011629 - Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal
IPR036627 - CobW-like, C-terminal domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6598632.1 COBW domain-containing protein 1, partial [Cucurbita argyrosperma subsp. sororia]8.6e-4189.58Show/hide
Query:  MCCS-HPCLIFQQVRSWLEEILWDRKGGMDVYRCKGVLSIKNSDQLHTLQAVRELYEIVPTRQWNNGESQMNKIVFIGRNLSEDVLSETFRACAVS
        +C S H  +   +VRSWLEEILWDRKGGMDVYRCKGVLSIKNSDQLHTLQAVRELYEIVPTRQWNNGESQMNKIVFIGRNLSEDVLSETFRACAVS
Subjt:  MCCS-HPCLIFQQVRSWLEEILWDRKGGMDVYRCKGVLSIKNSDQLHTLQAVRELYEIVPTRQWNNGESQMNKIVFIGRNLSEDVLSETFRACAVS

KAG7029569.1 COBW domain-containing protein 1, partial [Cucurbita argyrosperma subsp. argyrosperma]3.8e-65100Show/hide
Query:  MNMRIELGTTQKRKEHKVFRDEWVCMCCSHPCLIFQQVRSWLEEILWDRKGGMDVYRCKGVLSIKNSDQLHTLQAVRELYEIVPTRQWNNGESQMNKIVF
        MNMRIELGTTQKRKEHKVFRDEWVCMCCSHPCLIFQQVRSWLEEILWDRKGGMDVYRCKGVLSIKNSDQLHTLQAVRELYEIVPTRQWNNGESQMNKIVF
Subjt:  MNMRIELGTTQKRKEHKVFRDEWVCMCCSHPCLIFQQVRSWLEEILWDRKGGMDVYRCKGVLSIKNSDQLHTLQAVRELYEIVPTRQWNNGESQMNKIVF

Query:  IGRNLSEDVLSETFRACAVS
        IGRNLSEDVLSETFRACAVS
Subjt:  IGRNLSEDVLSETFRACAVS

XP_022962150.1 COBW domain-containing protein 1 [Cucurbita moschata]8.6e-4189.58Show/hide
Query:  MCCS-HPCLIFQQVRSWLEEILWDRKGGMDVYRCKGVLSIKNSDQLHTLQAVRELYEIVPTRQWNNGESQMNKIVFIGRNLSEDVLSETFRACAVS
        +C S H  +   +VRSWLEEILWDRKGGMDVYRCKGVLSIKNSDQLHTLQAVRELYEIVPTRQWNNGESQMNKIVFIGRNLSEDVLSETFRACAVS
Subjt:  MCCS-HPCLIFQQVRSWLEEILWDRKGGMDVYRCKGVLSIKNSDQLHTLQAVRELYEIVPTRQWNNGESQMNKIVFIGRNLSEDVLSETFRACAVS

XP_022997190.1 COBW domain-containing protein 1 [Cucurbita maxima]6.2e-3986.46Show/hide
Query:  MCCS-HPCLIFQQVRSWLEEILWDRKGGMDVYRCKGVLSIKNSDQLHTLQAVRELYEIVPTRQWNNGESQMNKIVFIGRNLSEDVLSETFRACAVS
        +C S H  +   +VRSWLEEILWD+KGGMDVYRCKGVLSIKNSDQLHTLQAVRELYEIVPTRQWNN ESQMNKIVFIGRNLSE+VLSETFRACAVS
Subjt:  MCCS-HPCLIFQQVRSWLEEILWDRKGGMDVYRCKGVLSIKNSDQLHTLQAVRELYEIVPTRQWNNGESQMNKIVFIGRNLSEDVLSETFRACAVS

XP_023546079.1 COBW domain-containing protein 1 [Cucurbita pepo subsp. pepo]3.3e-4087.5Show/hide
Query:  MCCS-HPCLIFQQVRSWLEEILWDRKGGMDVYRCKGVLSIKNSDQLHTLQAVRELYEIVPTRQWNNGESQMNKIVFIGRNLSEDVLSETFRACAVS
        +C S H  +   +VRSWLEEILWD+KGGMDVYRCKGVLSIKNSDQLHTLQAVRE+YEIVPTRQWNNGESQMNKIVFIGRNLSEDVLSETFRACAVS
Subjt:  MCCS-HPCLIFQQVRSWLEEILWDRKGGMDVYRCKGVLSIKNSDQLHTLQAVRELYEIVPTRQWNNGESQMNKIVFIGRNLSEDVLSETFRACAVS

TrEMBL top hitse value%identityAlignment
A0A1S4DVA6 COBW domain-containing protein 1 isoform X11.1e-3681.91Show/hide
Query:  MCCS-HPCLIFQQVRSWLEEILWDRKGGMDVYRCKGVLSIKNSDQLHTLQAVRELYEIVPTRQWNNGESQMNKIVFIGRNLSEDVLSETFRACA
        +C S H  +   +V SWLEEILW++KGGMDVYRCKGVLSIKNSDQLHTLQAVRELYEIVPTRQW+NGESQMNKIVFIGRNL+EDVLS+TFR CA
Subjt:  MCCS-HPCLIFQQVRSWLEEILWDRKGGMDVYRCKGVLSIKNSDQLHTLQAVRELYEIVPTRQWNNGESQMNKIVFIGRNLSEDVLSETFRACA

A0A5A7VCN1 COBW domain-containing protein 1 isoform X18.1e-3780Show/hide
Query:  VCMCCSHPCLIFQQVRSWLEEILWDRKGGMDVYRCKGVLSIKNSDQLHTLQAVRELYEIVPTRQWNNGESQMNKIVFIGRNLSEDVLSETFRACA
        +C+   H   + + V SWLEEILW++KGGMDVYRCKGVLSIKNSDQLHTLQAVRELYEIVPTRQW+NGESQMNKIVFIGRNL+EDVLS+TFR CA
Subjt:  VCMCCSHPCLIFQQVRSWLEEILWDRKGGMDVYRCKGVLSIKNSDQLHTLQAVRELYEIVPTRQWNNGESQMNKIVFIGRNLSEDVLSETFRACA

A0A6J1BVX3 COBW domain-containing protein 1 isoform X21.1e-3690.48Show/hide
Query:  QVRSWLEEILWDRKGGMDVYRCKGVLSIKNSDQLHTLQAVRELYEIVPTRQWNNGESQMNKIVFIGRNLSEDVLSETFRACAVS
        +V SWLEEILWD+KGGMDVYRCKGVLSIKNSDQLHTLQAVRELYEIVPTR+WNNGES MNKIVFIGRNL+EDVL ET RACAVS
Subjt:  QVRSWLEEILWDRKGGMDVYRCKGVLSIKNSDQLHTLQAVRELYEIVPTRQWNNGESQMNKIVFIGRNLSEDVLSETFRACAVS

A0A6J1HE98 COBW domain-containing protein 14.2e-4189.58Show/hide
Query:  MCCS-HPCLIFQQVRSWLEEILWDRKGGMDVYRCKGVLSIKNSDQLHTLQAVRELYEIVPTRQWNNGESQMNKIVFIGRNLSEDVLSETFRACAVS
        +C S H  +   +VRSWLEEILWDRKGGMDVYRCKGVLSIKNSDQLHTLQAVRELYEIVPTRQWNNGESQMNKIVFIGRNLSEDVLSETFRACAVS
Subjt:  MCCS-HPCLIFQQVRSWLEEILWDRKGGMDVYRCKGVLSIKNSDQLHTLQAVRELYEIVPTRQWNNGESQMNKIVFIGRNLSEDVLSETFRACAVS

A0A6J1K8W5 COBW domain-containing protein 13.0e-3986.46Show/hide
Query:  MCCS-HPCLIFQQVRSWLEEILWDRKGGMDVYRCKGVLSIKNSDQLHTLQAVRELYEIVPTRQWNNGESQMNKIVFIGRNLSEDVLSETFRACAVS
        +C S H  +   +VRSWLEEILWD+KGGMDVYRCKGVLSIKNSDQLHTLQAVRELYEIVPTRQWNN ESQMNKIVFIGRNLSE+VLSETFRACAVS
Subjt:  MCCS-HPCLIFQQVRSWLEEILWDRKGGMDVYRCKGVLSIKNSDQLHTLQAVRELYEIVPTRQWNNGESQMNKIVFIGRNLSEDVLSETFRACAVS

SwissProt top hitse value%identityAlignment
Q5JTY5 COBW domain-containing protein 32.6e-0832.95Show/hide
Query:  QQVRSWLEEILWDR------KGGMDVYRCKGVLSIKNSDQLHTLQAVRELYEIVPTR-QWNNGESQMNKIVFIGRNLSEDVLSETFRA
        + +  +++ +LW++         M+V R KG++SIK+  Q   +Q V ELY++  T   W +   + N++V IGRNL +D+L + F A
Subjt:  QQVRSWLEEILWDR------KGGMDVYRCKGVLSIKNSDQLHTLQAVRELYEIVPTR-QWNNGESQMNKIVFIGRNLSEDVLSETFRA

Q5RIA9 COBW domain-containing protein 52.6e-0832.95Show/hide
Query:  QQVRSWLEEILWDR------KGGMDVYRCKGVLSIKNSDQLHTLQAVRELYEIVPTR-QWNNGESQMNKIVFIGRNLSEDVLSETFRA
        + +  +++ +LW++         M+V R KG++SIK+  Q   +Q V ELY++  T   W +   + N++V IGRNL +D+L + F A
Subjt:  QQVRSWLEEILWDR------KGGMDVYRCKGVLSIKNSDQLHTLQAVRELYEIVPTR-QWNNGESQMNKIVFIGRNLSEDVLSETFRA

Q8IUF1 COBW domain-containing protein 24.5e-0831.82Show/hide
Query:  QQVRSWLEEILWDR------KGGMDVYRCKGVLSIKNSDQLHTLQAVRELYEIVPTR-QWNNGESQMNKIVFIGRNLSEDVLSETFRA
        + +  +++ +LW++         M+V R KG++SIK+  Q   +Q V ELY++  T   W +   + N++V +GRNL +D+L + F A
Subjt:  QQVRSWLEEILWDR------KGGMDVYRCKGVLSIKNSDQLHTLQAVRELYEIVPTR-QWNNGESQMNKIVFIGRNLSEDVLSETFRA

Q99MB4 COBW domain-containing protein 13.4e-0833.72Show/hide
Query:  QQVRSWLEEILWDR----KGG--MDVYRCKGVLSIKNSDQLHTLQAVRELYEIVPTR-QWNNGESQMNKIVFIGRNLSEDVLSETF
        + +  +++ +LW++    K G  M+V R KG++SIK+  Q   +Q + ELYE+  +R  W +   +  ++VFIG+NL +D+L + F
Subjt:  QQVRSWLEEILWDR----KGG--MDVYRCKGVLSIKNSDQLHTLQAVRELYEIVPTR-QWNNGESQMNKIVFIGRNLSEDVLSETF

Q9BRT8 COBW domain-containing protein 14.5e-0831.82Show/hide
Query:  QQVRSWLEEILWDR------KGGMDVYRCKGVLSIKNSDQLHTLQAVRELYEIVPTR-QWNNGESQMNKIVFIGRNLSEDVLSETFRA
        + +  +++ +LW++         M+V R KG++SIK+  Q   +Q V ELY++  T   W +   + N++V +GRNL +D+L + F A
Subjt:  QQVRSWLEEILWDR------KGGMDVYRCKGVLSIKNSDQLHTLQAVRELYEIVPTR-QWNNGESQMNKIVFIGRNLSEDVLSETFRA

Arabidopsis top hitse value%identityAlignment
AT1G15730.1 Cobalamin biosynthesis CobW-like protein1.1e-1440.23Show/hide
Query:  LIFQQVRSWLEEILWDRKGGMDVYRCKGVLSIKNSDQLHTLQAVRELYEIVPTRQWNNGESQMNKIVFIGRNLSEDVLSETFRACAV
        L  ++   WL  +L+ R    D+YR KG+LS+++ D+    Q V E++E  P R W   E++ NKIVFIG+NL+ + L   FRAC +
Subjt:  LIFQQVRSWLEEILWDRKGGMDVYRCKGVLSIKNSDQLHTLQAVRELYEIVPTRQWNNGESQMNKIVFIGRNLSEDVLSETFRACAV

AT1G26520.1 Cobalamin biosynthesis CobW-like protein4.0e-2861.29Show/hide
Query:  MCCSHPCLI-FQQVRSWLEEILWDRKGGMDVYRCKGVLSIKNSDQLHTLQAVRELYEIVPTRQWNNGESQMNKIVFIGRNLSEDVLSETFRAC
        +C S P  I   +VR WLEEILWD+K  MDVYRCK VLSI+NSDQ+H LQAVR++YEIVP R+W+  E++ NKIVFIG  L E+VL    R C
Subjt:  MCCSHPCLI-FQQVRSWLEEILWDRKGGMDVYRCKGVLSIKNSDQLHTLQAVRELYEIVPTRQWNNGESQMNKIVFIGRNLSEDVLSETFRAC

AT1G80480.1 plastid transcriptionally active 178.1e-1335.63Show/hide
Query:  LIFQQVRSWLEEILWDRKGGMDVYRCKGVLSIKNSDQLHTLQAVRELYEIVPTRQWNNGESQMNKIVFIGRNLSEDVLSETFRACAV
        L  ++   WL  +L +R    D+YR KG+LS+   ++    Q V ++++  P R W   E ++NKIVFIG+NL+ + L + F+AC +
Subjt:  LIFQQVRSWLEEILWDRKGGMDVYRCKGVLSIKNSDQLHTLQAVRELYEIVPTRQWNNGESQMNKIVFIGRNLSEDVLSETFRACAV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACATGAGAATTGAATTAGGTACAACTCAAAAAAGAAAGGAACATAAAGTATTTCGAGACGAATGGGTTTGTATGTGCTGTTCTCATCCCTGCCTTATCTTCCAACA
GGTTCGTTCTTGGCTCGAGGAGATACTTTGGGATAGAAAAGGTGGCATGGATGTCTATCGTTGCAAAGGAGTCTTAAGCATAAAAAATTCTGATCAACTACATACTTTGC
AGGCGGTGAGGGAATTATACGAAATCGTTCCTACTCGCCAATGGAATAACGGAGAAAGTCAGATGAACAAGATAGTCTTCATAGGTCGTAATCTTAGCGAGGATGTTCTT
AGCGAAACGTTTAGAGCATGTGCAGTCTCCTAA
mRNA sequenceShow/hide mRNA sequence
ATGAACATGAGAATTGAATTAGGTACAACTCAAAAAAGAAAGGAACATAAAGTATTTCGAGACGAATGGGTTTGTATGTGCTGTTCTCATCCCTGCCTTATCTTCCAACA
GGTTCGTTCTTGGCTCGAGGAGATACTTTGGGATAGAAAAGGTGGCATGGATGTCTATCGTTGCAAAGGAGTCTTAAGCATAAAAAATTCTGATCAACTACATACTTTGC
AGGCGGTGAGGGAATTATACGAAATCGTTCCTACTCGCCAATGGAATAACGGAGAAAGTCAGATGAACAAGATAGTCTTCATAGGTCGTAATCTTAGCGAGGATGTTCTT
AGCGAAACGTTTAGAGCATGTGCAGTCTCCTAAGTTTTGTAGCTTTACCAGTTGTTGGATTACATGGGAAAACAAAGCAAGGTGCGTATTGTAGAAGTGCTTGTGCATGA
ATCACTTATTGTACTGATTTCAAAGTGCTTTTGTGGGCATTTCTTAAACTTTAACTATAAGGAAAAGGAGAATGTGGAGTTTCTTTTGTAGGTAAATCTTGGAGATTTGT
GCAATAGTTGTTTTTAGTTTAATCCTATATAACAATTGGACACTCCCTTGTCTCGAACGTCTCGGGACTAAATGCACATATTCTTAAAAATTCGGGACTAAAATATCAAT
TCTTCCGAAAATCTTTGATCTCTTATTCGCTGCTTTGTTGTATGCACAACATTAGTGTGAGATCCTATATTAGTTGAAGAGGGGAAGAGGGGAACGAAACATTCCTTAGT
GTAGAGACCTTTCTCTAGTAGACGCATTTTAAAATTGTGAGACTGATAGCGATACATAACGGGCCAAAGT
Protein sequenceShow/hide protein sequence
MNMRIELGTTQKRKEHKVFRDEWVCMCCSHPCLIFQQVRSWLEEILWDRKGGMDVYRCKGVLSIKNSDQLHTLQAVRELYEIVPTRQWNNGESQMNKIVFIGRNLSEDVL
SETFRACAVS