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Carg09295 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg09295
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionnuclear factor Y, subunit C13
Genome locationCarg_Chr05:2096022..2096444
RNA-Seq ExpressionCarg09295
SyntenyCarg09295
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0046982 - protein heterodimerization activity (molecular function)
InterPro domainsIPR003958 - Transcription factor CBF/NF-Y/archaeal histone domain
IPR009072 - Histone-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6598611.1 Dr1-associated corepressor, partial [Cucurbita argyrosperma subsp. sororia]4.3e-68100Show/hide
Query:  MAEEEPGDAIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAAEKKRKTVKLEHIRIAVKRHQSISDFLLDSLPLPSQPSDAP
        MAEEEPGDAIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAAEKKRKTVKLEHIRIAVKRHQSISDFLLDSLPLPSQPSDAP
Subjt:  MAEEEPGDAIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAAEKKRKTVKLEHIRIAVKRHQSISDFLLDSLPLPSQPSDAP

Query:  AKVENRTRVVVDKVAPEGTRRIDDFFRRPAKTASAETNET
        AKVENRTRVVVDKVAPEGTRRIDDFFRRPAKTASAETNET
Subjt:  AKVENRTRVVVDKVAPEGTRRIDDFFRRPAKTASAETNET

XP_022962477.1 DNA polymerase epsilon subunit C [Cucurbita moschata]9.0e-6697.14Show/hide
Query:  MAEEEPGDAIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAAEKKRKTVKLEHIRIAVKRHQSISDFLLDSLPLPSQPSDAP
        MAEEEPG+AIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAAEKKRKTVKLEHIRIAVKRHQSI DFLLDSLPLPSQPSDAP
Subjt:  MAEEEPGDAIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAAEKKRKTVKLEHIRIAVKRHQSISDFLLDSLPLPSQPSDAP

Query:  AKVENRTRVVVDKVAPEGTRRIDDFFRRPAKTASAETNET
        AK ENRTRVVVDKVAPEGTRRIDDFFRRP KTASAETNET
Subjt:  AKVENRTRVVVDKVAPEGTRRIDDFFRRPAKTASAETNET

XP_022997291.1 DNA polymerase epsilon subunit C [Cucurbita maxima]6.9e-6697.14Show/hide
Query:  MAEEEPGDAIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAAEKKRKTVKLEHIRIAVKRHQSISDFLLDSLPLPSQPSDAP
        MAEEEPG+AIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKS+EVAAEKKRKTVKLEHIRIAVKRHQSISDFLLDSLPLPSQPSDAP
Subjt:  MAEEEPGDAIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAAEKKRKTVKLEHIRIAVKRHQSISDFLLDSLPLPSQPSDAP

Query:  AKVENRTRVVVDKVAPEGTRRIDDFFRRPAKTASAETNET
        AK ENRTRVVVDKVAPEGTRRIDDFFRRP KTASAETNET
Subjt:  AKVENRTRVVVDKVAPEGTRRIDDFFRRPAKTASAETNET

XP_023547243.1 putative transcription factor C16C4.22 [Cucurbita pepo subsp. pepo]1.0e-6496.43Show/hide
Query:  MAEEEPGDAIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAAEKKRKTVKLEHIRIAVKRHQSISDFLLDSLPLPSQPSDAP
        MAE+E G+AIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAAEKKRKTVKLEHIRIAVKRHQSISDFLLDSLPLPSQPSDAP
Subjt:  MAEEEPGDAIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAAEKKRKTVKLEHIRIAVKRHQSISDFLLDSLPLPSQPSDAP

Query:  AKVENRTRVVVDKVAPEGTRRIDDFFRRPAKTASAETNET
        AK ENRTRVVVDKVAPEGTRRIDDFFRRPAKTASAE NET
Subjt:  AKVENRTRVVVDKVAPEGTRRIDDFFRRPAKTASAETNET

XP_038884228.1 NCT transcriptional regulatory complex subunit A [Benincasa hispida]2.5e-6090Show/hide
Query:  MAEEEPGDAIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAAEKKRKTVKLEHIRIAVKRHQSISDFLLDSLPLPSQPSDAP
        MAEEE GDAIRPEFP GR+KKIMKLDKDI KVNSEALFLVSCATELFL+LLAEKS+EVAAEKKRKTVKLEHIRIAVKRH+SISDFLLDSLPLP QPSDAP
Subjt:  MAEEEPGDAIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAAEKKRKTVKLEHIRIAVKRHQSISDFLLDSLPLPSQPSDAP

Query:  AKVENRTRVVVDKVAPEGTRRIDDFFRRPAKTASAETNET
        AK ENRTR VVDKV PEGTRRIDDFFRRPAKT SAE NE+
Subjt:  AKVENRTRVVVDKVAPEGTRRIDDFFRRPAKTASAETNET

TrEMBL top hitse value%identityAlignment
A0A0A0KGV1 CBFD_NFYB_HMF domain-containing protein5.7e-5889.05Show/hide
Query:  MAEEEPGDAIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAAEKKRKTVKLEHIRIAVKRHQSISDFLLDSLPLPSQPSDAP
        M EEE G+AIRPEFP GR+KKIMKLDKDIGKVNSEALFLVSCATELFL+LLAEKS+E AAEKKRKTVKLEHIR+AVKRH+SISDFLLDSLPLPSQPSDAP
Subjt:  MAEEEPGDAIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAAEKKRKTVKLEHIRIAVKRHQSISDFLLDSLPLPSQPSDAP

Query:  AKVENRTRVVVDKVAPEGTRRIDDFFRRPAKTASAET
        AK ENRTR VVDKVAPEGTRRIDDFFRR  KT SAET
Subjt:  AKVENRTRVVVDKVAPEGTRRIDDFFRRPAKTASAET

A0A1S3BDL4 dr1-associated corepressor5.2e-5987.86Show/hide
Query:  MAEEEPGDAIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAAEKKRKTVKLEHIRIAVKRHQSISDFLLDSLPLPSQPSDAP
        M EEE G+AIRPEFP GR+KKIMKLDKDIGKVNSEALFLVSCATELFL+LLAEKS+EVAAEKKRKTVKLEHIR+AVKRH+SISDFLLDSLPLPSQPSDA 
Subjt:  MAEEEPGDAIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAAEKKRKTVKLEHIRIAVKRHQSISDFLLDSLPLPSQPSDAP

Query:  AKVENRTRVVVDKVAPEGTRRIDDFFRRPAKTASAETNET
        AK ENR R VVDKVAP GTRRIDDFFRRP KT SAETNE+
Subjt:  AKVENRTRVVVDKVAPEGTRRIDDFFRRPAKTASAETNET

A0A5A7VG98 Dr1-associated corepressor1.0e-5987.86Show/hide
Query:  MAEEEPGDAIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAAEKKRKTVKLEHIRIAVKRHQSISDFLLDSLPLPSQPSDAP
        M EEE G+AIRPEFP GR+KKIMKLDKDIGKVNSEALF+VSCATELFL+LLAEKS+EVAAEKKRKTVKLEHIR+AVKRH+SISDFLLDSLPLPSQPSDAP
Subjt:  MAEEEPGDAIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAAEKKRKTVKLEHIRIAVKRHQSISDFLLDSLPLPSQPSDAP

Query:  AKVENRTRVVVDKVAPEGTRRIDDFFRRPAKTASAETNET
        AK ENR R VVDKVAP GTRRIDDFFRRP KT SAETNE+
Subjt:  AKVENRTRVVVDKVAPEGTRRIDDFFRRPAKTASAETNET

A0A6J1HCT3 DNA polymerase epsilon subunit C4.4e-6697.14Show/hide
Query:  MAEEEPGDAIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAAEKKRKTVKLEHIRIAVKRHQSISDFLLDSLPLPSQPSDAP
        MAEEEPG+AIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAAEKKRKTVKLEHIRIAVKRHQSI DFLLDSLPLPSQPSDAP
Subjt:  MAEEEPGDAIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAAEKKRKTVKLEHIRIAVKRHQSISDFLLDSLPLPSQPSDAP

Query:  AKVENRTRVVVDKVAPEGTRRIDDFFRRPAKTASAETNET
        AK ENRTRVVVDKVAPEGTRRIDDFFRRP KTASAETNET
Subjt:  AKVENRTRVVVDKVAPEGTRRIDDFFRRPAKTASAETNET

A0A6J1K737 DNA polymerase epsilon subunit C3.3e-6697.14Show/hide
Query:  MAEEEPGDAIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAAEKKRKTVKLEHIRIAVKRHQSISDFLLDSLPLPSQPSDAP
        MAEEEPG+AIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKS+EVAAEKKRKTVKLEHIRIAVKRHQSISDFLLDSLPLPSQPSDAP
Subjt:  MAEEEPGDAIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAAEKKRKTVKLEHIRIAVKRHQSISDFLLDSLPLPSQPSDAP

Query:  AKVENRTRVVVDKVAPEGTRRIDDFFRRPAKTASAETNET
        AK ENRTRVVVDKVAPEGTRRIDDFFRRP KTASAETNET
Subjt:  AKVENRTRVVVDKVAPEGTRRIDDFFRRPAKTASAETNET

SwissProt top hitse value%identityAlignment
B0XTT5 NCT transcriptional regulatory complex subunit A2.0e-0737.08Show/hide
Query:  IRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAAEKKRKTVKLEHIRIAVKRHQSISDFLLDSL-PLPSQPS
        ++ +FP+ RIK+IM+ D+D+GKV       VS A ELF+  L  K+++ A ++  K V   H++ AV + + + DFL D +  +P QP+
Subjt:  IRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAAEKKRKTVKLEHIRIAVKRHQSISDFLLDSL-PLPSQPS

Q14919 Dr1-associated corepressor3.4e-0741.33Show/hide
Query:  FPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAAEKKRKTVKLEHIRIAVKRHQSISDFLLD
        FP  RIKKIM+ D++IGKV +    ++S A ELFLE L +K+ +V   +  KT+   H++  ++  Q   DFL D
Subjt:  FPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAAEKKRKTVKLEHIRIAVKRHQSISDFLLD

Q2YDP3 Dr1-associated corepressor3.4e-0741.33Show/hide
Query:  FPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAAEKKRKTVKLEHIRIAVKRHQSISDFLLD
        FP  RIKKIM+ D++IGKV +    ++S A ELFLE L +K+ +V   +  KT+   H++  ++  Q   DFL D
Subjt:  FPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAAEKKRKTVKLEHIRIAVKRHQSISDFLLD

Q4X095 NCT transcriptional regulatory complex subunit A2.0e-0737.08Show/hide
Query:  IRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAAEKKRKTVKLEHIRIAVKRHQSISDFLLDSL-PLPSQPS
        ++ +FP+ RIK+IM+ D+D+GKV       VS A ELF+  L  K+++ A ++  K V   H++ AV + + + DFL D +  +P QP+
Subjt:  IRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAAEKKRKTVKLEHIRIAVKRHQSISDFLLDSL-PLPSQPS

Q54DA1 Dr1-associated corepressor homolog2.0e-0737.18Show/hide
Query:  RPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAAEKKRKTVKLEHIRIAVKRHQSISDFLLD
        + +FPM RIKKIM+ D+++GK+ S    L+S   ELF+  L  K+ ++   KK K + + H++  +K+ +S  DFL +
Subjt:  RPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAAEKKRKTVKLEHIRIAVKRHQSISDFLLD

Arabidopsis top hitse value%identityAlignment
AT1G07980.1 nuclear factor Y, subunit C106.3e-0933.04Show/hide
Query:  EEEPGDA--IRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAAEKKRKTVKLEHIRIAVKRHQSISDFLLDSLPLPSQPSDAP
        EE+ G A   + +FPM RI++IM+ D    ++  +A+FLV+ ATE+F+E  +E++ + + + K+K +  +H+   V   Q   +FL DS+P   +   A 
Subjt:  EEEPGDA--IRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAAEKKRKTVKLEHIRIAVKRHQSISDFLLDSLPLPSQPSDAP

Query:  AKVENRTRVVVD
        A +E   R + D
Subjt:  AKVENRTRVVVD

AT3G12480.1 nuclear factor Y, subunit C111.4e-0842.47Show/hide
Query:  FPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAAEKKRKTVKLEHIRIAVKRHQSISDFL
        FP  RIKKIM+ D+D+GK+      LVS + ELFL+ L +++ E+  E+  KTV   H++  V+R+ ++ DFL
Subjt:  FPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAAEKKRKTVKLEHIRIAVKRHQSISDFL

AT3G48590.1 nuclear factor Y, subunit C13.1e-0839.77Show/hide
Query:  EEPGDAIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAAEKKRKTVKLEHIRIAVKRHQSISDFLLDSLP
        E+  D    + P+ RIKKIMK D+D+  +++EA  L + A ELF+  L  +S   A E KR+T++   I  A+ R   I DFL+D +P
Subjt:  EEPGDAIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAAEKKRKTVKLEHIRIAVKRHQSISDFLLDSLP

AT5G43250.1 nuclear factor Y, subunit C131.9e-3764.96Show/hide
Query:  EEEPGDAIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAAEKKRKTVKLEHIRIAVKRHQSISDFLLDSLPLPSQPSDAPAK
        EEE G +IRPEFP+GR+KKIMKLDKDI K+NSEAL +++ +TELFL  LAEKS+ V AEKKRKTV L+H+RIAVKRHQ  SDFLLDSLPLP+QP      
Subjt:  EEEPGDAIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAAEKKRKTVKLEHIRIAVKRHQSISDFLLDSLPLPSQPSDAPAK

Query:  VENRTRVVVDK---VAPEGTRRIDDFFRR-PAKTASA
            T+ V DK     P GTRRIDDFF +  AKT SA
Subjt:  VENRTRVVVDK---VAPEGTRRIDDFFRR-PAKTASA

AT5G63470.1 nuclear factor Y, subunit C43.1e-0839.77Show/hide
Query:  EEPGDAIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAAEKKRKTVKLEHIRIAVKRHQSISDFLLDSLP
        E+  D    + P+ RIKKIMK D+D+  +++EA  L + A ELF+  L  +S   A E KR+T++   I  A+ R   I DFL+D +P
Subjt:  EEPGDAIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAAEKKRKTVKLEHIRIAVKRHQSISDFLLDSLP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGAAGAGGAACCCGGAGATGCTATCCGGCCGGAATTTCCGATGGGGCGAATAAAGAAGATAATGAAGCTGGACAAGGACATTGGTAAAGTGAATTCAGAAGCGCT
GTTTTTAGTCTCATGCGCCACTGAGCTTTTCCTTGAGCTTCTCGCTGAAAAATCTTCCGAAGTCGCCGCCGAGAAGAAACGGAAGACCGTGAAGCTTGAACACATCCGAA
TCGCCGTCAAAAGGCATCAATCGATCAGTGATTTTCTCCTCGATTCGCTTCCTCTTCCTTCTCAGCCGTCGGATGCTCCGGCGAAGGTCGAGAATCGCACTCGCGTTGTC
GTTGATAAAGTGGCTCCTGAAGGAACCCGCCGAATCGATGATTTCTTTCGCCGGCCAGCGAAGACCGCGTCCGCGGAGACCAACGAGACATAG
mRNA sequenceShow/hide mRNA sequence
ATGGCAGAAGAGGAACCCGGAGATGCTATCCGGCCGGAATTTCCGATGGGGCGAATAAAGAAGATAATGAAGCTGGACAAGGACATTGGTAAAGTGAATTCAGAAGCGCT
GTTTTTAGTCTCATGCGCCACTGAGCTTTTCCTTGAGCTTCTCGCTGAAAAATCTTCCGAAGTCGCCGCCGAGAAGAAACGGAAGACCGTGAAGCTTGAACACATCCGAA
TCGCCGTCAAAAGGCATCAATCGATCAGTGATTTTCTCCTCGATTCGCTTCCTCTTCCTTCTCAGCCGTCGGATGCTCCGGCGAAGGTCGAGAATCGCACTCGCGTTGTC
GTTGATAAAGTGGCTCCTGAAGGAACCCGCCGAATCGATGATTTCTTTCGCCGGCCAGCGAAGACCGCGTCCGCGGAGACCAACGAGACATAG
Protein sequenceShow/hide protein sequence
MAEEEPGDAIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAAEKKRKTVKLEHIRIAVKRHQSISDFLLDSLPLPSQPSDAPAKVENRTRVV
VDKVAPEGTRRIDDFFRRPAKTASAETNET