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Carg09355 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg09355
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description60S ribosomal protein L39
Genome locationCarg_Chr05:1688509..1689819
RNA-Seq ExpressionCarg09355
SyntenyCarg09355
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR000077 - Ribosomal protein L39e
IPR020083 - Ribosomal protein L39e, conserved site
IPR023626 - Ribosomal protein L39e domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6585491.1 60S ribosomal protein L39, partial [Cucurbita argyrosperma subsp. sororia]4.0e-2298.21Show/hide
Query:  SRFSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        SR SKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  SRFSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
KAG7024434.1 60S ribosomal protein L39, partial [Cucurbita argyrosperma subsp. argyrosperma]1.8e-2295Show/hide
Query:  LAAGSRFSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        LAA  R SKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  LAAGSRFSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
KAG7029487.1 60S ribosomal protein L39, partial [Cucurbita argyrosperma subsp. argyrosperma]3.1e-59100Show/hide
Query:  RLKKAFLDQPIYIVRRRNGLGDCLGPSNVVLAVHIRCSSPLSLVSSEIRVSVSCFLFVALAAGSRFSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTD
        RLKKAFLDQPIYIVRRRNGLGDCLGPSNVVLAVHIRCSSPLSLVSSEIRVSVSCFLFVALAAGSRFSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTD
Subjt:  RLKKAFLDQPIYIVRRRNGLGDCLGPSNVVLAVHIRCSSPLSLVSSEIRVSVSCFLFVALAAGSRFSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTD

Query:  NTIRYNAKRRHWRRTKLGF
        NTIRYNAKRRHWRRTKLGF
Subjt:  NTIRYNAKRRHWRRTKLGF
RCV30551.1 hypothetical protein SETIT_6G104600v2 [Setaria italica]5.8e-2194.55Show/hide
Query:  RFSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        RFSKMPSHKTF+IKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Subjt:  RFSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
XP_022962571.1 uncharacterized protein LOC111462968 [Cucurbita moschata]3.5e-5898.32Show/hide
Query:  RLKKAFLDQPIYIVRRRNGLGDCLGPSNVVLAVHIRCSSPLSLVSSEIRVSVSCFLFVALAAGSRFSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTD
        RLKKAFLDQPIYIVRRRNGLGDCLGPSNVVLAVHI+CSSPLSLV SEIRVSVSCFLFVALAAGSRFSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTD
Subjt:  RLKKAFLDQPIYIVRRRNGLGDCLGPSNVVLAVHIRCSSPLSLVSSEIRVSVSCFLFVALAAGSRFSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTD

Query:  NTIRYNAKRRHWRRTKLGF
        NTIRYNAKRRHWRRTKLGF
Subjt:  NTIRYNAKRRHWRRTKLGF
TrEMBL top hitse value%identityAlignment
A0A0A0LM35 Uncharacterized protein3.2e-2594.03Show/hide
Query:  CFLFVAL-AAGSRFSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        C LFVAL AAG R SKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  CFLFVAL-AAGSRFSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
A0A2P5ANB0 Ribosomal protein3.6e-2196.36Show/hide
Query:  RFSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        R +KMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  RFSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
A0A368RK84 Uncharacterized protein2.8e-2194.55Show/hide
Query:  RFSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        RFSKMPSHKTF+IKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Subjt:  RFSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
A0A6J1HDM7 uncharacterized protein LOC1114629681.7e-5898.32Show/hide
Query:  RLKKAFLDQPIYIVRRRNGLGDCLGPSNVVLAVHIRCSSPLSLVSSEIRVSVSCFLFVALAAGSRFSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTD
        RLKKAFLDQPIYIVRRRNGLGDCLGPSNVVLAVHI+CSSPLSLV SEIRVSVSCFLFVALAAGSRFSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTD
Subjt:  RLKKAFLDQPIYIVRRRNGLGDCLGPSNVVLAVHIRCSSPLSLVSSEIRVSVSCFLFVALAAGSRFSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTD

Query:  NTIRYNAKRRHWRRTKLGF
        NTIRYNAKRRHWRRTKLGF
Subjt:  NTIRYNAKRRHWRRTKLGF
K3YM29 Uncharacterized protein2.8e-2194.55Show/hide
Query:  RFSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        RFSKMPSHKTF+IKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Subjt:  RFSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
SwissProt top hitse value%identityAlignment
P51424 60S ribosomal protein L39-12.1e-2194.12Show/hide
Query:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        MPSHK+F IKKKL KKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
P51425 60S ribosomal protein L394.1e-2296.08Show/hide
Query:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        MPSHKTFRIKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Subjt:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
P51426 60S ribosomal protein L39-24.1e-2296.08Show/hide
Query:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        MPSHKTFRIKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Subjt:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Q5SMI4 60S ribosomal protein L39-31.2e-2194.12Show/hide
Query:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        MPSHKTF+IKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Subjt:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Q6KAJ8 60S ribosomal protein L39-14.1e-2296.08Show/hide
Query:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        MPSHKTFRIKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Subjt:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Arabidopsis top hitse value%identityAlignment
AT2G25210.1 Ribosomal protein L39 family protein1.3e-1897.67Show/hide
Query:  IKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        IKKKL KKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  IKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
AT3G02190.1 Ribosomal protein L39 family protein4.7e-2190.2Show/hide
Query:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        MPSHK+F IKKKL KKMRQNRPIP+WIRLRTDN IRYNAKRRHWRRTKLGF
Subjt:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
AT4G31985.1 Ribosomal protein L39 family protein1.5e-2294.12Show/hide
Query:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        MPSHK+F IKKKL KKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AGGCTCAAAAAGGCCTTTCTGGACCAGCCCATTTACATTGTCCGTCGACGAAATGGACTTGGGGATTGCCTAGGACCGAGCAATGTTGTGCTGGCGGTCCACATAAGGTG
CTCATCTCCTCTTTCGCTCGTTTCCTCTGAAATTAGGGTTTCTGTTTCTTGTTTTCTGTTCGTAGCCCTCGCAGCCGGTTCTCGATTCTCCAAGATGCCGTCGCACAAGA
CCTTCAGAATCAAGAAGAAGTTGGCGAAGAAGATGAGACAGAACAGGCCTATTCCTCACTGGATCCGTCTCAGGACTGACAATACCATCAGGTACAATGCGAAGCGAAGG
CACTGGCGCCGCACTAAGCTCGGATTCTGA
mRNA sequenceShow/hide mRNA sequence
AGGCTCAAAAAGGCCTTTCTGGACCAGCCCATTTACATTGTCCGTCGACGAAATGGACTTGGGGATTGCCTAGGACCGAGCAATGTTGTGCTGGCGGTCCACATAAGGTG
CTCATCTCCTCTTTCGCTCGTTTCCTCTGAAATTAGGGTTTCTGTTTCTTGTTTTCTGTTCGTAGCCCTCGCAGCCGGTTCTCGATTCTCCAAGATGCCGTCGCACAAGA
CCTTCAGAATCAAGAAGAAGTTGGCGAAGAAGATGAGACAGAACAGGCCTATTCCTCACTGGATCCGTCTCAGGACTGACAATACCATCAGGTACAATGCGAAGCGAAGG
CACTGGCGCCGCACTAAGCTCGGATTCTGAGGTGTTTTGCATGTGATTTTCTCTTCATCCTTGGAAATTGTTTTGATCCTAATTAAGCGTTAGTAGTGGAGAAGACAGAG
AATATAGAGCTAGATGTTTGAATTTTTGCCTCTCAATTAAGAATTTATCGAAGAGAATCTGGAGTAGTCTTTAGGGCTACTTCCCTATGTTAAATTTATATCTGGAGTGA
TGTCAATTCGGAAGTTAATTCGTGTTGGTTTAGTTCAGTTTGGTGCCATTTCTTCTAACGCTAGTGTAGAGTTTTATTATGGCCTTTGATCATTGAAGTATTCAGGTGGA
TGAGATGAGTTTAGTATCTCTACTAGATCATCGATTGACTGGGTGCATTAGCTTGCGTATCTGAACAAATTAACTCCTACAAGTGTGTTGTATGGATTTAGTTGTTAAAT
CTCTTCCTCTATGTTGGAACTTTGATTTTGATTCATGAACATTCATTCACTTTCTGTTTGTGTCCGGAACTCTTCACTACATTTCATGCTTAGTTTCTATCAGATCAGTG
ATCATAAACATAACTGTCCATTTTCAAATTTTCAAGTTTCATTTCTTAAGAACAAAATTGACTTTCAAGCTATTAGTAATTTGACGTGTCGCCATATGTCTCTTCATGTG
ATGAACAACATAGAAATAAGGTTGTAATGGCCTTTGGAGTTCCCAAGTGAGAACTAAATTTACAGGCTTTAGCAAATTCCAAGTCTTAGTCACTTTTCATGTAACATCTC
AAATCCAAATATTGTTTCTTTAGG
Protein sequenceShow/hide protein sequence
RLKKAFLDQPIYIVRRRNGLGDCLGPSNVVLAVHIRCSSPLSLVSSEIRVSVSCFLFVALAAGSRFSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRR
HWRRTKLGF