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Carg09387 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg09387
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionComplex 1 LYR protein
Genome locationCarg_Chr05:1498197..1498673
RNA-Seq ExpressionCarg09387
SyntenyCarg09387
Gene Ontology termsGO:0032981 - mitochondrial respiratory chain complex I assembly (biological process)
GO:0005759 - mitochondrial matrix (cellular component)
InterPro domainsIPR008011 - Complex 1 LYR protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7029455.1 hypothetical protein SDJN02_07794, partial [Cucurbita argyrosperma subsp. argyrosperma]3.5e-82100Show/hide
Query:  MSMRLVEKCVKLSTHKNFLACNKIGYHPRALHNGPDTIDELLDRHVVKKEKSFDDDEEELITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDV
        MSMRLVEKCVKLSTHKNFLACNKIGYHPRALHNGPDTIDELLDRHVVKKEKSFDDDEEELITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDV
Subjt:  MSMRLVEKCVKLSTHKNFLACNKIGYHPRALHNGPDTIDELLDRHVVKKEKSFDDDEEELITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDV

Query:  LRQNARKEFEDARFETDPEIVTRLLIGGRDAVQSALDKLAEKQRQEIDKKQSGGRDRP
        LRQNARKEFEDARFETDPEIVTRLLIGGRDAVQSALDKLAEKQRQEIDKKQSGGRDRP
Subjt:  LRQNARKEFEDARFETDPEIVTRLLIGGRDAVQSALDKLAEKQRQEIDKKQSGGRDRP

XP_022961619.1 uncharacterized protein LOC111462339 [Cucurbita moschata]6.1e-7997.47Show/hide
Query:  MSMRLVEKCVKLSTHKNFLACNKIGYHPRALHNGPDTIDELLDRHVVKKEKSFDDDEEELITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDV
        MSMRLVEKCVKLSTHKNFLACNK+G+HPR LHNGPDTIDELLDRHVVKKEKSFDDDEEELITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDV
Subjt:  MSMRLVEKCVKLSTHKNFLACNKIGYHPRALHNGPDTIDELLDRHVVKKEKSFDDDEEELITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDV

Query:  LRQNARKEFEDARFETDPEIVTRLLIGGRDAVQSALDKLAEKQRQEIDKKQSGGRDRP
        LRQNARKEFEDARFETDPEIVTRLLIGGRDAVQSALDKLAEKQRQEIDKKQS GRDRP
Subjt:  LRQNARKEFEDARFETDPEIVTRLLIGGRDAVQSALDKLAEKQRQEIDKKQSGGRDRP

XP_022997345.1 uncharacterized protein LOC111492289 [Cucurbita maxima]1.4e-7897.47Show/hide
Query:  MSMRLVEKCVKLSTHKNFLACNKIGYHPRALHNGPDTIDELLDRHVVKKEKSFDDDEEELITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDV
        MSMRLVEKCVKLSTHKNFLACNK GYHPRALHNGPDTIDELLD HVVKKEKSFDDDEEELITQRRLTSTRRE+LSLYRDILRATRFFMWPDSRGVLWRDV
Subjt:  MSMRLVEKCVKLSTHKNFLACNKIGYHPRALHNGPDTIDELLDRHVVKKEKSFDDDEEELITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDV

Query:  LRQNARKEFEDARFETDPEIVTRLLIGGRDAVQSALDKLAEKQRQEIDKKQSGGRDRP
        LRQNARKEFEDARFETDPEIVTRLLIGGRDAVQSALDKLAEKQRQEIDKKQSGG DRP
Subjt:  LRQNARKEFEDARFETDPEIVTRLLIGGRDAVQSALDKLAEKQRQEIDKKQSGGRDRP

XP_023545212.1 uncharacterized protein LOC111804691 [Cucurbita pepo subsp. pepo]3.6e-7998.73Show/hide
Query:  MSMRLVEKCVKLSTHKNFLACNKIGYHPRALHNGPDTIDELLDRHVVKKEKSFDDDEEELITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDV
        MSMRLVEKCVKLSTHKNFLACNKIGY PRALHNGPDTIDELLDRHVVKKEKSFDDDEEELITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDV
Subjt:  MSMRLVEKCVKLSTHKNFLACNKIGYHPRALHNGPDTIDELLDRHVVKKEKSFDDDEEELITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDV

Query:  LRQNARKEFEDARFETDPEIVTRLLIGGRDAVQSALDKLAEKQRQEIDKKQSGGRDRP
        LRQNARKEFEDARFETDPEIVTRLLIGGRDAVQSALDKLAEKQRQEIDKKQS GRDRP
Subjt:  LRQNARKEFEDARFETDPEIVTRLLIGGRDAVQSALDKLAEKQRQEIDKKQSGGRDRP

XP_038884246.1 uncharacterized protein LOC120075144 [Benincasa hispida]3.1e-7089.4Show/hide
Query:  MRLVEKCVKLSTHKNFLACNKIGYHPRALHNGPDTIDELLDRHVVKKEKSFDDDEEELITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDVLR
        MRLV KC+ LS HKNFL CNKIG+HPR LHNGPDT+ ELLDRHVVKKEKSFDD+E+ELITQRRLT+TRREALSLYRDILRATRFFMWPDSRGVLWRDVLR
Subjt:  MRLVEKCVKLSTHKNFLACNKIGYHPRALHNGPDTIDELLDRHVVKKEKSFDDDEEELITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDVLR

Query:  QNARKEFEDARFETDPEIVTRLLIGGRDAVQSALDKLAEKQRQEIDKKQSG
        QNARKEFEDAR+E+DPEIVTRLLIGGRDAVQSALDKLAEKQ QEIDKKQ+G
Subjt:  QNARKEFEDARFETDPEIVTRLLIGGRDAVQSALDKLAEKQRQEIDKKQSG

TrEMBL top hitse value%identityAlignment
A0A1S4DWJ1 uncharacterized protein LOC1034885695.8e-6786.36Show/hide
Query:  MSMRLVEKCVKLST-HKNFLACNKIGYHPRALHNGPDTIDELLDRHVVKKEKSFDDDEEELITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRD
        M+MRLV K + LS+  KNFL C+KIG+HPR LHNGPDT++ELLDRHVVKKEKS DDD ++LITQRRLTSTRREALSLYRDILRATRFFMWPDS+GVLWRD
Subjt:  MSMRLVEKCVKLST-HKNFLACNKIGYHPRALHNGPDTIDELLDRHVVKKEKSFDDDEEELITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRD

Query:  VLRQNARKEFEDARFETDPEIVTRLLIGGRDAVQSALDKLAEKQRQEIDKKQSG
        VLRQNARKEFEDARFE+DPEIVTRLLIGGRDAVQSALDKLAEKQR+EIDKKQSG
Subjt:  VLRQNARKEFEDARFETDPEIVTRLLIGGRDAVQSALDKLAEKQRQEIDKKQSG

A0A5A7VCD6 Complex 1 LYR protein5.8e-6786.36Show/hide
Query:  MSMRLVEKCVKLST-HKNFLACNKIGYHPRALHNGPDTIDELLDRHVVKKEKSFDDDEEELITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRD
        M+MRLV K + LS+  KNFL C+KIG+HPR LHNGPDT++ELLDRHVVKKEKS DDD ++LITQRRLTSTRREALSLYRDILRATRFFMWPDS+GVLWRD
Subjt:  MSMRLVEKCVKLST-HKNFLACNKIGYHPRALHNGPDTIDELLDRHVVKKEKSFDDDEEELITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRD

Query:  VLRQNARKEFEDARFETDPEIVTRLLIGGRDAVQSALDKLAEKQRQEIDKKQSG
        VLRQNARKEFEDARFE+DPEIVTRLLIGGRDAVQSALDKLAEKQR+EIDKKQSG
Subjt:  VLRQNARKEFEDARFETDPEIVTRLLIGGRDAVQSALDKLAEKQRQEIDKKQSG

A0A6J1CRY1 uncharacterized protein LOC1110140197.4e-7085.71Show/hide
Query:  MSMRLVEKCVKLSTHKNFLACNKIGYHPRALHNGPDTIDELLDRHVVKKEKSFDDDEEELITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDV
        M++RLV KC+ LS HK+FLACNKIG+HPR LHNGPDTIDELLDRHVVKKEKSF+D+++ELITQR LTSTRREALSLYRDI+RATRFFMWPDSRGVLWRDV
Subjt:  MSMRLVEKCVKLSTHKNFLACNKIGYHPRALHNGPDTIDELLDRHVVKKEKSFDDDEEELITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDV

Query:  LRQNARKEFEDARFETDPEIVTRLLIGGRDAVQSALDKLAEKQRQEIDKKQSGG
        LR+NARKEFE+AR+E+DPE+VTRLLIGGRDAVQSALDKLAEKQ QEIDKKQ GG
Subjt:  LRQNARKEFEDARFETDPEIVTRLLIGGRDAVQSALDKLAEKQRQEIDKKQSGG

A0A6J1HEL0 uncharacterized protein LOC1114623393.0e-7997.47Show/hide
Query:  MSMRLVEKCVKLSTHKNFLACNKIGYHPRALHNGPDTIDELLDRHVVKKEKSFDDDEEELITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDV
        MSMRLVEKCVKLSTHKNFLACNK+G+HPR LHNGPDTIDELLDRHVVKKEKSFDDDEEELITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDV
Subjt:  MSMRLVEKCVKLSTHKNFLACNKIGYHPRALHNGPDTIDELLDRHVVKKEKSFDDDEEELITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDV

Query:  LRQNARKEFEDARFETDPEIVTRLLIGGRDAVQSALDKLAEKQRQEIDKKQSGGRDRP
        LRQNARKEFEDARFETDPEIVTRLLIGGRDAVQSALDKLAEKQRQEIDKKQS GRDRP
Subjt:  LRQNARKEFEDARFETDPEIVTRLLIGGRDAVQSALDKLAEKQRQEIDKKQSGGRDRP

A0A6J1K786 uncharacterized protein LOC1114922896.6e-7997.47Show/hide
Query:  MSMRLVEKCVKLSTHKNFLACNKIGYHPRALHNGPDTIDELLDRHVVKKEKSFDDDEEELITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDV
        MSMRLVEKCVKLSTHKNFLACNK GYHPRALHNGPDTIDELLD HVVKKEKSFDDDEEELITQRRLTSTRRE+LSLYRDILRATRFFMWPDSRGVLWRDV
Subjt:  MSMRLVEKCVKLSTHKNFLACNKIGYHPRALHNGPDTIDELLDRHVVKKEKSFDDDEEELITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDV

Query:  LRQNARKEFEDARFETDPEIVTRLLIGGRDAVQSALDKLAEKQRQEIDKKQSGGRDRP
        LRQNARKEFEDARFETDPEIVTRLLIGGRDAVQSALDKLAEKQRQEIDKKQSGG DRP
Subjt:  LRQNARKEFEDARFETDPEIVTRLLIGGRDAVQSALDKLAEKQRQEIDKKQSGGRDRP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G76060.1 LYR family of Fe/S cluster biogenesis protein1.0e-4775.4Show/hide
Query:  RALHNGPDTIDELLDRHVVKKEKS-FDDDEEELITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDVLRQNARKEFEDARFETDPEIVTRLLIG
        R LH GPDT++ELL+RH+ KKEK   D DE E + +RRLTSTRREALSLYRDILRATRFF W DSRG LWRDVLR+NARKEFE ARFETDPE++TRLLIG
Subjt:  RALHNGPDTIDELLDRHVVKKEKS-FDDDEEELITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDVLRQNARKEFEDARFETDPEIVTRLLIG

Query:  GRDAVQSALDKLAEKQRQEIDKKQSG
        G DAV SALDKLAEKQR+ I+K++ G
Subjt:  GRDAVQSALDKLAEKQRQEIDKKQSG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCATGAGATTGGTAGAAAAATGTGTTAAGCTGTCAACTCACAAGAACTTTCTGGCTTGCAATAAAATTGGTTACCACCCTCGAGCTCTGCATAATGGTCCAGACAC
CATTGATGAACTCTTAGACAGACATGTGGTAAAGAAAGAAAAGTCCTTTGATGACGATGAAGAAGAATTGATAACTCAGCGACGCCTCACCAGCACTCGACGTGAGGCTC
TAAGTCTCTACAGGGACATTCTCCGTGCAACTCGATTCTTTATGTGGCCAGATTCTCGAGGTGTCTTGTGGCGAGATGTTCTCAGGCAGAATGCACGGAAGGAGTTTGAG
GACGCCCGCTTTGAGACTGATCCAGAAATTGTGACCAGACTTCTCATTGGTGGGCGTGATGCAGTGCAGTCGGCTCTTGACAAGCTTGCTGAGAAGCAGAGGCAGGAGAT
TGATAAGAAACAAAGTGGTGGTCGAGATCGACCCTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGCATGAGATTGGTAGAAAAATGTGTTAAGCTGTCAACTCACAAGAACTTTCTGGCTTGCAATAAAATTGGTTACCACCCTCGAGCTCTGCATAATGGTCCAGACAC
CATTGATGAACTCTTAGACAGACATGTGGTAAAGAAAGAAAAGTCCTTTGATGACGATGAAGAAGAATTGATAACTCAGCGACGCCTCACCAGCACTCGACGTGAGGCTC
TAAGTCTCTACAGGGACATTCTCCGTGCAACTCGATTCTTTATGTGGCCAGATTCTCGAGGTGTCTTGTGGCGAGATGTTCTCAGGCAGAATGCACGGAAGGAGTTTGAG
GACGCCCGCTTTGAGACTGATCCAGAAATTGTGACCAGACTTCTCATTGGTGGGCGTGATGCAGTGCAGTCGGCTCTTGACAAGCTTGCTGAGAAGCAGAGGCAGGAGAT
TGATAAGAAACAAAGTGGTGGTCGAGATCGACCCTGA
Protein sequenceShow/hide protein sequence
MSMRLVEKCVKLSTHKNFLACNKIGYHPRALHNGPDTIDELLDRHVVKKEKSFDDDEEELITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDVLRQNARKEFE
DARFETDPEIVTRLLIGGRDAVQSALDKLAEKQRQEIDKKQSGGRDRP