CuGenDBv2

Gene ID	Carg09402
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Tubulin beta chain
Genome location	Carg_Chr05:1429567..1430711
RNA-Seq Expression	Carg09402
Synteny	Carg09402
Gene Ontology terms	GO:0000226 - microtubule cytoskeleton organization (biological process) GO:0000278 - mitotic cell cycle (biological process) GO:0005737 - cytoplasm (cellular component) GO:0005874 - microtubule (cellular component) GO:0003924 - GTPase activity (molecular function) GO:0005200 - structural constituent of cytoskeleton (molecular function) GO:0005525 - GTP binding (molecular function)
InterPro domains	IPR000217 - Tubulin IPR002453 - Beta tubulin IPR003008 - Tubulin/FtsZ, GTPase domain IPR013838 - Beta tubulin, autoregulation binding site IPR036525 - Tubulin/FtsZ, GTPase domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7029440.1 Tubulin beta-1 chain, partial [Cucurbita argyrosperma subsp. argyrosperma]

8.5e-98

100

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Query:  MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAG
        MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAG
Subjt:  MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAG

Query:  NNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQVNMNNKVMVAITFSDPRPLPTKLALASGCQQNPDLDILTA
        NNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQVNMNNKVMVAITFSDPRPLPTKLALASGCQQNPDLDILTA
Subjt:  NNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQVNMNNKVMVAITFSDPRPLPTKLALASGCQQNPDLDILTA

XP_008444814.1 PREDICTED: tubulin beta chain [Cucumis melo]

6.5e-74

100

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Query:  MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAG
        MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAG
Subjt:  MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAG

Query:  NNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQ
        NNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQ
Subjt:  NNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQ

XP_022962240.1 tubulin beta chain-like [Cucurbita moschata]

6.5e-74

100

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Query:  MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAG
        MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAG
Subjt:  MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAG

Query:  NNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQ
        NNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQ
Subjt:  NNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQ

XP_023002345.1 tubulin beta chain-like [Cucurbita maxima]

6.5e-74

100

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Query:  MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAG
        MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAG
Subjt:  MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAG

Query:  NNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQ
        NNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQ
Subjt:  NNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQ

XP_038885170.1 tubulin beta chain-like [Benincasa hispida]

6.5e-74

100

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Query:  MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAG
        MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAG
Subjt:  MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAG

Query:  NNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQ
        NNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQ
Subjt:  NNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQ

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LPG6 Tubulin beta chain

3.2e-74

100

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Query:  MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAG
        MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAG
Subjt:  MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAG

Query:  NNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQ
        NNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQ
Subjt:  NNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQ

A0A5A7VD89 Tubulin beta chain

3.2e-74

100

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Query:  MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAG
        MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAG
Subjt:  MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAG

Query:  NNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQ
        NNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQ
Subjt:  NNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQ

A0A6J1CRF9 Tubulin beta chain

3.2e-74

100

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Query:  MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAG
        MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAG
Subjt:  MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAG

Query:  NNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQ
        NNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQ
Subjt:  NNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQ

A0A6J1K690 Tubulin beta chain

3.2e-74

100

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Query:  MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAG
        MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAG
Subjt:  MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAG

Query:  NNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQ
        NNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQ
Subjt:  NNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQ

A0A6J1KNN8 Tubulin beta chain

3.2e-74

100

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Query:  MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAG
        MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAG
Subjt:  MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAG

Query:  NNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQ
        NNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQ
Subjt:  NNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQ

SwissProt top hits

e value

%identity

Alignment

P12411 Tubulin beta-1 chain

9.8e-73

95.49

Show/hide

Query:  MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAG
        MREILHVQGGQCGNQIGSKFWEVICDEHG+D TG+YNGD S+DLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAG
Subjt:  MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAG

Query:  NNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQ
        NNWAKGHYTEGAELID+VLDVVRKEAENCDCLQ
Subjt:  NNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQ

P28551 Tubulin beta chain (Fragment)

1.4e-71

93.98

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Query:  MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAG
        MREILH+QGGQCGNQIG+KFWEVICDEHGID TGKY+GD  S+LQLERINVYYNEASGGRYVPRAVLMDLEPGTMDS+RSGPYGQIFRPDNFVFGQSGAG
Subjt:  MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAG

Query:  NNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQ
        NNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQ
Subjt:  NNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQ

Q40665 Tubulin beta-3 chain

4.9e-72

94.74

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Query:  MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAG
        MREILH+QGGQCGNQIG+KFWEVICDEHGID TGKY+GD  SDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDS+RSGPYGQIFRPDNFVFGQSGAG
Subjt:  MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAG

Query:  NNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQ
        NNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQ
Subjt:  NNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQ

Q6VAF6 Tubulin beta-6 chain

5.7e-73

94.74

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Query:  MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAG
        MREILHVQGGQCGNQIGSKFWEVICDEHG+D TGKYNGD SSD+QLERI+VYYNEASGGRYVPRAVLMDLEPGTMDSIRSGP GQIFRPDNFVFGQSGAG
Subjt:  MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAG

Query:  NNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQ
        NNWAKGHYTEGAELID+VLDVVRKEAENCDCLQ
Subjt:  NNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQ

Q6VAF7 Tubulin beta-5 chain

4.9e-72

93.98

Show/hide

Query:  MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAG
        MREILH+QGGQCGNQIG+KFWEVICDEHG+D TGKYNGD  SDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDS+RSGP+GQIFRPDNFVFGQSGAG
Subjt:  MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAG

Query:  NNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQ
        NNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQ
Subjt:  NNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQ

Arabidopsis top hits

e value

%identity

Alignment

AT1G20010.1 tubulin beta-5 chain

1.0e-72

93.23

Show/hide

Query:  MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAG
        MREILH+QGGQCGNQIGSKFWEVICDEHGID+TG+Y+GD ++DLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGP+GQIFRPDNFVFGQSGAG
Subjt:  MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAG

Query:  NNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQ
        NNWAKGHYTEGAELID+VLDVVRKEAENCDCLQ
Subjt:  NNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQ

AT1G75780.1 tubulin beta-1 chain

7.0e-74

95.49

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Query:  MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAG
        MREILHVQGGQCGNQIGSKFWEVICDEHG+D TG+YNGD S+DLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAG
Subjt:  MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAG

Query:  NNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQ
        NNWAKGHYTEGAELID+VLDVVRKEAENCDCLQ
Subjt:  NNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQ

AT5G12250.1 beta-6 tubulin

2.7e-70

89.47

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Query:  MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAG
        MREILH+QGGQCGNQIGSKFWEV+CDEHGID TG+Y G  +SDLQLER+NVYYNEAS GRYVPRA+LMDLEPGTMDS+R+GPYGQIFRPDNFVFGQSGAG
Subjt:  MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAG

Query:  NNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQ
        NNWAKGHYTEGAELID+VLDVVRKEAENCDCLQ
Subjt:  NNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQ

AT5G62690.1 tubulin beta chain 2

1.4e-69

90.23

Show/hide

Query:  MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAG
        MREILH+QGGQCGNQIG+KFWEV+C EHGID TG+Y GD  SDLQLERINVYYNEAS GR+VPRAVLMDLEPGTMDS+RSGPYGQ FRPDNFVFGQSGAG
Subjt:  MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAG

Query:  NNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQ
        NNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQ
Subjt:  NNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQ

AT5G62700.1 tubulin beta chain 3

1.4e-69

90.23

Show/hide

Query:  MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAG
        MREILH+QGGQCGNQIG+KFWEV+C EHGID TG+Y GD  SDLQLERINVYYNEAS GR+VPRAVLMDLEPGTMDS+RSGPYGQ FRPDNFVFGQSGAG
Subjt:  MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAG

Query:  NNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQ
        NNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQ
Subjt:  NNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQ

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGAGAGAGATTCTTCACGTTCAAGGTGGCCAATGCGGCAACCAAATCGGATCCAAGTTCTGGGAAGTCATCTGCGATGAGCACGGTATCGACGCCACCGGAAAATACAA
CGGAGATCCTTCCTCTGATCTTCAACTGGAGAGGATCAATGTCTATTACAATGAGGCTTCTGGCGGTAGATACGTTCCCAGGGCTGTTCTCATGGATCTTGAGCCCGGTA
CCATGGATAGTATCAGATCCGGTCCCTACGGTCAGATCTTTCGCCCCGATAATTTCGTTTTTGGACAGTCCGGTGCCGGAAATAACTGGGCCAAGGGTCATTACACCGAA
GGAGCTGAGTTGATCGACTCCGTTCTTGATGTTGTTCGTAAGGAGGCTGAGAACTGTGATTGCTTGCAAGTAAATATGAATAACAAAGTGATGGTTGCTATAACTTTCTC
AGATCCACGTCCGTTGCCCACTAAACTTGCTCTGGCAAGCGGTTGTCAGCAGAATCCTGATCTTGATATCCTAACTGCTTAA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTE
GAELIDSVLDVVRKEAENCDCLQVNMNNKVMVAITFSDPRPLPTKLALASGCQQNPDLDILTA

Carg09402 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome